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Heatmap: Cluster_30 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
6.03 5.97 4.32 8.77 1.29 1.82 6.66 4.73 4.32 4.34
4.14 4.02 1.43 4.04 0.67 0.56 2.08 2.36 2.87 2.43
10.95 9.93 2.68 5.42 0.69 1.03 8.11 6.57 7.11 5.96
7.68 7.55 4.73 10.88 1.33 0.88 7.39 5.52 4.63 3.79
38.33 35.89 20.07 34.48 17.92 17.41 22.99 22.96 22.59 23.92
11.17 10.6 4.83 9.72 5.0 4.25 5.56 6.27 7.4 5.79
34.21 32.04 20.17 40.97 5.79 4.51 29.44 22.83 23.43 23.69
11.73 11.61 10.22 13.48 7.09 5.02 10.59 9.81 8.27 8.77
14.27 11.19 5.99 16.12 5.66 4.69 10.63 8.83 9.11 9.81
63.4 58.42 36.31 52.62 41.17 34.2 48.52 47.25 47.23 47.3
5.23 4.15 3.49 4.39 2.48 2.74 4.19 3.67 4.26 4.23
6.18 6.96 3.11 6.75 0.89 0.71 5.81 4.11 3.99 3.96
54.94 52.25 30.68 53.16 25.39 19.09 55.06 36.67 41.84 38.12
31.53 30.24 23.74 30.01 16.94 9.25 33.73 22.07 20.83 21.02
13.78 16.11 4.45 11.53 1.5 1.2 9.38 9.96 6.58 10.13
8.21 7.98 5.7 9.29 3.03 2.84 6.26 6.06 6.57 7.02
9.04 9.27 4.38 9.61 1.89 1.7 7.89 6.39 6.27 5.6
30.48 35.28 25.02 35.08 12.93 10.94 28.63 22.09 21.96 22.22
26.31 34.23 5.9 31.97 8.48 3.04 16.58 18.82 19.29 17.13
13.2 11.04 7.13 15.73 3.87 3.07 11.24 9.42 9.53 8.48
61.27 60.93 53.08 67.32 26.96 24.14 49.63 45.18 45.76 51.73
30.92 33.53 20.12 34.9 8.68 6.19 26.49 21.78 22.22 24.38
21.39 23.45 11.53 23.13 3.73 2.3 17.98 17.18 13.01 19.06
32.33 34.96 21.22 28.17 10.85 10.46 21.72 20.19 18.39 18.15
74.88 75.59 61.91 96.3 36.84 33.79 61.6 59.03 60.82 61.17
36.91 38.67 20.38 47.37 8.05 7.06 31.26 21.82 25.73 23.33
35.95 40.67 24.04 39.52 7.07 6.37 25.87 17.6 25.67 20.24
7.57 7.58 0.76 6.84 0.21 0.16 3.17 3.7 2.51 5.36
7.12 8.79 4.73 7.73 2.18 1.53 9.12 5.46 6.96 4.71
3.19 2.87 2.13 2.65 0.57 0.8 1.8 1.66 1.27 1.78
56.04 60.69 12.05 72.79 9.95 8.02 52.64 32.49 36.21 26.87
5.98 6.51 1.67 4.91 0.81 0.54 4.11 3.26 3.57 3.2
42.36 38.29 33.23 48.63 25.36 26.01 37.97 32.81 34.19 35.11
64.97 48.17 25.87 46.52 25.24 17.1 34.41 31.05 25.55 30.44
20.02 23.48 9.3 20.53 6.26 4.53 23.3 17.73 17.97 13.15
22.08 24.0 14.86 23.78 9.38 8.49 22.03 19.61 22.46 16.72
2.13 1.81 0.61 2.45 1.13 1.01 1.45 1.45 0.98 1.95
6.22 5.87 2.08 5.55 1.02 0.43 3.35 4.96 2.24 2.13
74.97 73.07 42.52 80.03 46.59 34.33 78.99 67.53 66.55 57.96
5.34 5.46 4.47 3.98 0.81 1.08 2.44 2.66 1.97 3.88
13.85 15.28 7.72 14.43 4.18 3.78 9.7 10.73 8.09 9.28
24.06 27.15 18.23 22.26 7.29 6.94 17.97 16.79 15.82 13.96
43.61 39.92 31.67 42.86 23.05 17.38 35.1 32.25 28.93 35.54
232.55 230.04 179.33 220.24 123.25 98.94 179.38 183.14 147.82 172.66
55.62 56.49 12.4 77.95 8.67 5.12 47.12 34.05 31.52 21.38
1.29 1.64 0.79 1.37 0.28 0.23 1.01 0.81 1.13 0.77
22.31 21.41 12.01 18.24 8.01 4.87 17.89 15.08 13.96 16.13
24.23 25.07 6.71 24.09 1.23 0.79 15.17 17.48 13.4 11.4
18.72 18.15 12.22 21.17 2.85 2.54 13.2 13.18 13.99 15.62
304.7 308.45 109.38 405.53 113.0 74.93 273.61 228.88 208.1 214.36
26.7 20.89 19.13 25.63 17.5 9.47 25.33 17.58 17.26 17.35
5.43 6.08 2.68 5.61 1.58 1.24 7.2 4.9 4.42 3.22
16.18 13.44 3.53 16.11 7.01 4.06 11.58 8.81 11.63 8.65
249.78 228.55 165.65 187.32 73.34 80.64 180.62 131.16 134.36 129.34
764.49 676.7 492.33 678.68 325.99 301.29 776.31 578.03 591.04 547.08
7.76 7.5 3.8 6.42 0.69 0.44 5.63 4.43 4.8 5.28
25.94 28.05 10.1 29.14 3.17 2.64 21.24 18.91 13.61 14.67
25.23 24.86 9.06 25.73 5.37 4.32 26.32 19.39 22.72 15.62
38.91 34.98 21.17 31.59 11.67 9.25 36.17 27.48 29.21 25.35
2.51 2.55 0.59 2.73 0.22 0.12 1.97 1.68 1.62 1.4
95.8 90.34 61.57 87.0 39.8 30.3 76.87 59.72 56.51 58.66
11.17 11.27 9.41 11.3 5.39 4.92 10.04 8.76 8.76 7.57
11.03 10.45 4.06 14.51 2.4 1.43 9.92 7.9 8.64 6.06
28.11 28.31 16.89 25.6 9.43 9.58 20.55 21.2 18.26 16.33
25.93 28.84 16.89 31.93 7.19 6.93 35.88 21.54 25.37 14.72
85.45 89.18 69.38 80.41 46.6 37.0 94.93 77.58 73.2 89.62
13.8 13.5 2.86 10.22 2.82 2.57 4.92 5.78 2.71 5.71
16.37 17.63 10.45 16.75 6.79 4.74 15.85 13.09 14.18 11.63
34.25 32.73 19.37 30.9 14.65 12.7 27.87 20.17 22.35 26.42
29.18 31.35 21.11 33.89 11.59 8.5 28.19 22.37 23.36 21.77
20.97 18.65 14.83 24.03 5.88 4.69 15.85 16.21 16.17 17.25
5.94 5.35 1.71 6.3 1.74 1.43 2.28 2.82 3.35 2.76
5.24 6.16 3.88 8.24 2.08 1.86 4.72 3.78 4.4 3.98
12.81 12.1 7.2 12.4 4.52 4.77 8.54 7.82 7.95 7.0
61.43 63.1 54.22 66.75 37.28 36.85 58.59 55.6 54.63 52.86
6.21 7.29 1.96 6.75 0.47 0.33 2.01 3.67 3.1 4.2
23.57 26.56 10.55 26.33 3.67 3.03 18.7 10.85 13.2 14.86
2.76 4.16 0.46 3.47 0.14 0.25 1.45 1.61 1.76 1.36
79.36 80.05 50.15 75.12 41.39 28.03 74.28 65.09 67.49 61.78
15.02 16.37 5.23 22.07 4.88 3.19 16.07 10.27 9.12 7.82
55.18 53.51 36.18 48.83 23.72 17.09 57.41 45.74 51.18 44.55
5.08 5.21 4.33 6.14 1.36 1.21 4.16 3.76 3.53 3.61
90.37 97.22 58.02 105.7 68.38 53.86 101.16 90.31 91.45 78.67
7.48 6.83 3.31 6.15 1.79 1.73 7.67 5.96 5.45 4.68
51.92 49.95 43.91 54.48 29.89 24.26 45.69 42.45 40.74 41.15
2.18 2.08 2.42 3.21 0.51 0.52 1.95 1.27 1.39 1.62
149.84 136.32 100.07 121.32 54.16 43.43 131.15 108.93 109.26 118.59
50.56 52.91 12.27 51.47 6.99 5.26 38.06 34.84 30.11 32.51
57.01 52.71 45.87 58.51 31.83 29.08 47.95 44.2 47.65 42.97
25.67 24.64 13.98 18.49 9.47 5.28 22.17 15.35 18.75 14.51
8.06 9.99 5.73 10.55 1.03 1.53 9.76 5.92 5.78 5.22
7.21 7.74 5.51 6.06 2.5 1.67 6.0 4.72 3.84 4.68
6.21 6.3 5.55 6.95 1.03 1.45 5.14 5.6 4.56 3.71
28.56 30.27 25.34 34.01 12.54 11.15 25.11 23.08 26.15 26.06
4.54 5.3 0.61 3.87 0.22 0.12 2.19 2.47 2.38 2.35
19.17 18.97 15.87 17.01 6.22 4.17 13.91 13.33 11.32 12.98
50.74 48.25 36.5 44.51 25.39 19.92 41.58 39.3 41.36 41.71
20.4 20.36 4.86 17.77 0.52 0.36 7.42 5.64 3.87 7.36
858.45 843.05 669.91 1010.55 293.59 186.77 858.79 595.28 614.7 514.9
29.01 30.72 10.96 28.32 10.0 8.47 27.71 20.52 20.7 16.57
7.2 7.86 1.55 8.21 1.59 1.22 4.95 4.42 4.94 2.78
8.38 9.22 3.37 8.29 2.44 1.56 9.44 6.95 6.62 4.79
2.28 2.1 0.4 2.06 0.38 0.07 0.71 0.88 0.72 1.3
56.74 54.14 22.67 68.44 18.86 13.5 49.68 34.89 35.52 34.96
19.34 15.27 13.2 17.27 3.73 2.57 14.96 10.53 9.86 11.58
9.13 10.32 2.92 10.17 2.49 1.62 9.93 6.28 5.41 5.34
30.55 33.97 17.26 29.14 8.46 6.25 36.96 30.34 28.96 21.94
25.75 21.23 14.27 20.71 13.02 9.55 13.24 10.91 11.04 15.32
56.51 56.18 47.02 59.22 28.31 23.03 51.95 47.4 45.4 45.82
1.27 1.76 0.93 0.59 0.1 0.16 0.1 0.74 0.47 0.63
73.59 59.55 41.2 56.43 20.36 14.81 47.31 40.61 38.16 49.08
63.66 62.55 41.24 53.69 28.0 23.39 54.75 50.67 50.92 41.94
24.47 29.35 15.51 27.72 7.02 3.24 23.02 17.59 17.89 14.54
12.22 12.8 8.12 14.01 5.29 3.23 12.62 12.41 11.19 8.19
11.62 12.47 12.62 16.83 3.32 2.06 11.23 7.37 9.51 9.04
107.38 80.47 58.04 80.86 38.96 22.83 80.59 54.45 71.62 72.33
2.9 2.2 1.42 3.47 0.19 0.22 2.63 1.56 1.17 1.59
13.0 15.33 4.66 12.17 0.34 0.23 4.47 6.79 5.31 4.51
8.51 8.52 5.01 8.79 1.89 1.13 10.32 5.48 7.58 6.49
16.82 15.98 8.57 15.66 0.94 0.76 13.0 10.16 9.94 11.71
67.09 71.19 40.27 96.3 23.4 24.53 62.81 50.31 56.11 43.53
18.07 15.77 10.92 16.58 5.86 5.43 13.14 9.14 8.35 10.23
3.9 4.18 1.8 4.32 0.53 0.5 3.73 2.29 1.96 2.61
16.18 18.5 12.22 22.94 3.66 3.7 15.6 10.58 10.61 13.79
10.88 10.59 9.01 11.41 3.87 3.49 10.0 8.18 8.3 9.02
2.06 2.13 0.58 2.02 0.14 0.16 1.88 1.15 0.78 0.97
5.32 6.16 1.66 7.34 1.75 0.82 5.35 3.45 2.66 2.72
75.09 80.41 43.7 81.65 21.72 19.63 81.95 61.57 61.61 57.04
112.55 102.51 32.81 116.26 29.67 21.75 75.92 64.36 55.43 56.28
6.8 7.36 3.25 9.93 0.81 0.71 5.22 3.57 3.31 3.19
10.6 10.58 8.28 11.47 6.16 3.99 10.34 7.9 6.89 7.17
7.0 7.36 2.03 5.68 0.77 0.44 6.52 3.81 4.15 4.16
8.43 7.6 4.75 8.43 2.98 1.74 5.48 4.8 5.29 4.65
27.28 26.14 12.48 22.57 11.51 8.75 22.18 25.97 22.1 16.2
1.54 1.53 1.0 1.32 0.17 0.18 0.86 0.68 0.6 0.68
54.0 50.9 36.2 47.51 17.66 17.61 39.16 34.09 30.99 34.41
28.57 26.76 8.32 23.77 3.52 1.94 23.75 18.12 20.5 18.96
16.12 12.86 6.12 14.08 4.12 3.32 9.98 9.87 8.51 8.78
174.93 159.85 156.08 172.92 123.47 124.55 152.82 149.37 140.87 140.58
68.34 54.2 46.83 69.33 22.18 19.6 52.35 40.96 43.71 45.44
4.51 4.3 3.1 3.49 1.94 1.4 3.78 3.41 3.48 3.14
12.06 13.17 3.95 13.85 3.24 2.18 11.46 7.98 9.0 6.56
32.17 30.9 17.7 27.69 10.33 5.95 32.47 22.19 22.61 22.22
105.52 84.45 68.67 93.21 56.66 42.25 82.9 66.75 68.52 78.64
8.5 11.04 6.07 8.49 3.74 3.44 7.26 7.45 6.5 6.78
29.74 28.04 6.9 26.71 6.96 4.64 33.32 20.97 26.54 17.16
9.64 9.89 5.93 9.4 3.5 3.07 8.74 7.3 7.5 7.38
16.0 17.43 6.06 17.87 2.48 1.97 13.79 10.35 11.99 8.37
26.37 26.56 9.28 24.06 10.23 8.21 26.44 17.51 19.65 16.05
50.31 48.69 37.35 39.35 32.53 27.77 32.3 37.4 32.02 40.25

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)