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Heatmap: Cluster_68 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
1.24 1.26 14.9 10.92 6.18 7.37 5.28 9.42 9.01 9.69
3.07 3.98 20.58 28.5 15.37 13.01 10.26 14.9 17.4 21.62
0.99 0.75 12.84 10.7 6.19 6.57 6.09 7.02 8.35 10.42
5.04 5.59 28.49 30.03 17.63 20.79 19.05 19.88 21.28 21.89
7.26 8.47 19.43 12.21 9.52 10.11 8.04 11.8 14.4 17.33
0.0 0.0 22.23 11.72 7.89 3.84 1.44 3.57 8.95 9.37
0.13 0.18 3.0 1.05 0.62 1.01 0.96 1.21 1.48 1.58
5.0 4.25 59.77 37.33 30.25 25.45 34.33 42.79 46.02 55.77
1.12 0.0 43.75 62.74 17.87 37.69 38.04 45.21 46.98 73.02
8.32 10.1 45.67 68.45 16.33 16.19 29.43 35.79 34.59 41.02
1.34 1.51 8.45 6.77 3.5 3.08 2.02 3.37 2.99 7.47
1.75 2.23 6.07 11.88 3.23 2.75 3.23 2.68 4.14 4.25
0.83 1.17 2.96 1.74 0.56 0.68 0.61 1.43 1.57 2.07
18.13 16.71 35.92 38.38 21.38 20.52 19.03 26.07 30.42 34.94
9.82 10.48 29.2 38.6 6.92 7.4 18.18 23.92 21.91 26.31
2.31 1.65 30.34 17.17 12.9 20.59 15.53 19.61 32.77 16.85
4.15 3.64 31.81 23.2 11.9 16.25 13.47 24.01 21.14 24.56
4.27 4.91 10.12 20.69 9.13 8.82 8.59 9.75 12.87 15.95
8.82 9.21 32.31 33.5 15.86 14.61 19.33 22.94 26.06 24.33
0.25 0.31 2.91 2.7 0.31 0.17 1.13 0.81 1.19 1.59
3.39 3.77 12.69 15.82 9.99 13.41 10.05 12.56 11.14 13.58
6.16 4.69 49.93 72.21 46.55 41.88 44.24 52.75 56.52 82.89
0.09 0.32 7.23 8.68 1.82 1.81 3.72 6.25 5.31 9.56
9.18 9.08 41.65 41.9 12.02 9.38 18.85 27.31 21.51 54.89
0.59 0.85 12.76 11.02 2.5 3.98 4.34 4.89 5.98 9.71
0.31 0.18 2.37 1.03 1.2 1.41 1.18 1.72 1.49 1.8
14.9 16.1 39.89 45.43 33.66 31.29 39.21 44.92 39.95 53.32
0.55 0.6 3.88 6.08 2.87 2.73 2.42 3.41 1.98 6.32
7.01 8.79 11.74 16.71 2.14 1.79 7.31 8.64 8.01 15.31
10.15 10.16 28.77 36.96 15.06 12.28 18.82 20.37 22.0 31.11
4.95 4.8 16.32 21.37 4.11 5.06 6.38 10.59 12.52 16.04
27.88 26.45 68.74 118.67 53.05 43.88 48.64 49.07 49.3 69.85
3.59 3.94 32.5 61.41 23.15 23.17 20.69 20.24 21.4 29.04
156.09 89.86 734.06 619.57 536.14 621.56 514.98 835.22 832.41 1054.27
0.0 0.0 4.02 4.17 0.11 0.29 1.9 2.33 1.77 3.76
0.0 0.01 2.53 11.6 0.31 0.51 0.25 1.64 2.26 6.44
4.96 3.8 107.98 149.64 27.3 30.05 32.15 56.36 63.75 108.11
1.29 1.87 6.28 7.27 3.35 3.34 3.62 4.84 4.84 5.61
4.67 5.24 14.66 15.15 10.85 9.11 11.95 14.09 12.15 21.42
1.04 0.93 20.98 19.62 18.9 16.51 17.68 24.33 23.13 30.16
2.2 2.99 40.93 26.3 14.76 16.35 20.61 33.67 30.84 30.64
3.33 4.09 12.15 8.27 6.05 5.9 8.49 13.1 9.91 12.95
0.3 0.2 6.3 5.88 7.17 6.95 7.67 9.5 8.55 13.26
68.54 70.01 201.1 379.72 129.78 105.21 123.72 147.41 167.13 337.06
6.24 6.44 27.74 43.73 3.05 3.48 12.8 17.26 17.03 41.46
0.0 0.0 2.9 2.52 0.0 0.0 0.0 0.74 0.22 2.73
0.0 0.0 0.95 0.0 0.09 0.14 0.0 0.26 0.46 0.06
17.54 18.19 25.71 66.36 30.81 34.57 38.86 38.82 40.12 49.02
4.83 4.75 15.23 13.22 2.0 3.57 4.7 6.73 6.7 12.16
0.85 1.39 6.96 7.32 3.22 3.96 4.91 6.03 5.28 6.03
1.85 1.58 8.65 2.38 0.2 0.17 1.81 2.4 4.65 8.83
30.8 32.75 79.46 116.46 61.41 61.37 63.66 87.82 90.11 141.05
0.97 0.68 56.01 43.7 25.58 35.97 13.3 30.34 17.04 65.03
7.16 7.12 27.09 30.25 9.28 7.87 11.52 18.43 24.46 24.52
11.17 11.24 39.19 48.89 21.49 25.78 22.96 27.19 28.36 42.19
5.39 4.96 7.86 8.76 5.53 5.11 7.77 6.32 6.14 9.49
9.22 9.48 17.2 29.52 13.9 12.74 15.91 14.92 18.93 18.5
0.0 0.0 3.57 2.6 0.24 0.3 1.15 1.48 1.36 3.14
13.58 15.9 37.36 39.17 13.53 14.02 20.51 20.81 21.72 28.29
27.4 30.09 48.45 68.88 20.59 24.55 37.55 42.64 43.8 67.5
15.21 14.66 34.24 28.9 24.44 25.01 19.08 22.19 25.95 31.94
4.82 6.47 81.3 162.65 35.04 43.93 26.69 42.07 43.0 99.17
8.98 8.4 21.29 20.14 11.72 9.22 11.84 12.31 14.18 19.91
7.31 7.56 28.95 36.0 31.94 31.11 21.9 31.32 35.88 44.18
10.49 11.06 43.03 49.67 24.03 23.33 21.12 22.65 25.76 29.63
13.75 14.57 59.28 49.73 13.58 8.51 24.78 27.65 30.63 62.92
8.1 9.01 15.65 22.42 11.46 11.05 10.67 12.14 14.59 16.83
64.51 67.1 243.86 319.11 93.88 86.74 123.78 151.55 165.33 233.79
0.89 1.08 75.05 230.07 68.37 32.26 34.95 64.96 67.98 101.66
8.69 10.59 18.92 45.55 3.03 3.17 16.86 19.27 21.58 32.22
0.18 0.16 63.11 46.09 9.68 14.09 9.61 12.26 15.01 56.12
0.0 0.0 7.72 4.62 1.42 1.62 0.59 1.92 2.16 8.4
7.93 8.72 50.77 48.04 21.75 29.76 30.9 32.12 35.7 38.75
3.53 3.7 26.74 22.33 13.58 13.0 15.1 18.4 15.14 22.56
6.22 6.94 13.5 15.45 8.8 8.22 9.68 11.35 13.4 16.43
0.65 0.52 26.31 47.51 11.07 12.42 8.24 11.59 14.99 36.48
5.16 6.28 20.23 26.9 14.98 12.68 12.39 18.24 18.16 22.81
6.27 7.05 16.57 11.95 2.39 3.11 3.75 7.73 6.27 9.5
50.59 51.36 138.31 91.64 103.95 107.95 123.07 116.94 112.25 149.72
0.01 0.01 2.96 9.89 2.49 2.72 0.86 2.56 4.43 5.89
5.58 6.23 14.41 18.86 7.58 8.01 11.2 12.01 11.45 14.59
20.28 16.28 117.05 139.92 27.75 46.05 31.35 57.22 68.35 133.72
8.13 6.93 40.86 31.31 23.3 24.7 25.01 25.48 31.39 46.81
7.6 7.66 25.21 18.81 12.3 15.56 14.73 21.63 20.29 24.21
9.88 10.24 22.48 40.66 13.13 15.06 14.25 16.04 16.74 28.29
0.52 0.46 23.9 42.99 9.91 6.77 5.57 8.33 14.15 18.32
56.3 56.43 119.28 91.27 76.3 89.98 96.65 98.63 100.31 106.41
35.69 37.65 102.04 215.73 139.11 114.44 97.88 141.98 149.23 261.98
0.0 0.0 1.96 1.79 0.19 0.18 1.13 1.78 1.79 1.07
9.67 9.59 27.26 29.37 22.51 18.41 22.11 27.32 29.02 35.07
1.23 1.47 8.03 10.22 5.59 6.35 6.06 8.51 5.61 8.97
8.77 8.3 12.55 14.55 9.32 9.07 9.44 11.5 12.6 14.59
5.26 6.05 49.11 36.1 23.55 31.68 26.14 34.3 59.43 64.75
0.89 0.32 27.13 18.17 4.13 4.64 4.41 12.11 11.88 16.36
14.12 15.39 40.2 53.3 20.28 14.83 23.29 31.28 27.39 36.51
6.72 6.14 16.13 16.91 10.0 8.32 11.96 12.34 13.19 16.62
1.68 1.51 30.96 57.43 10.39 14.65 6.54 10.53 10.63 27.92
9.61 9.95 35.46 41.05 21.08 23.12 19.58 25.91 26.57 38.92
0.26 0.96 3.93 2.51 1.89 1.62 0.99 2.13 2.1 1.71
3.86 3.45 69.15 105.04 52.5 41.67 27.73 45.16 45.08 100.94
6.17 6.05 35.48 39.82 18.3 16.38 21.65 25.56 25.56 34.63
1.75 1.4 115.25 71.44 30.11 39.54 35.32 58.48 59.35 86.11
16.45 15.31 53.56 44.15 41.04 47.02 37.64 48.43 56.56 44.86
39.35 39.3 103.33 70.79 64.32 73.72 70.05 83.44 69.68 109.76
1.05 1.29 91.52 71.06 13.01 12.16 20.54 51.2 41.31 110.01
3.07 3.19 25.48 22.91 12.99 11.2 23.22 23.0 22.16 23.17
1.01 1.07 17.17 15.08 6.96 4.98 9.4 11.19 9.39 23.53
2.67 3.08 57.9 28.33 6.78 4.59 13.38 12.61 15.22 40.61
13.71 15.15 37.98 42.65 29.36 33.83 29.62 33.51 31.76 62.14
3.07 3.25 6.47 7.4 3.52 3.14 6.24 5.79 5.45 8.01
5.35 7.01 19.31 14.72 12.25 13.4 14.51 16.45 14.33 18.42
4.82 5.1 36.22 76.85 15.48 15.87 16.25 17.47 23.72 42.61
10.77 11.21 49.1 63.57 25.43 33.48 33.1 33.47 44.19 59.69
3.0 2.38 31.44 42.0 16.19 14.67 16.29 23.89 21.94 38.17
12.18 12.02 28.24 29.98 18.25 14.61 19.22 21.94 21.89 28.27
6.86 6.85 18.85 20.51 2.53 2.09 10.12 12.0 10.61 16.34
18.46 22.36 71.03 66.47 48.57 58.49 51.25 66.54 54.72 91.76
3.47 4.26 11.68 9.7 9.62 9.28 9.71 12.17 12.12 13.5
18.4 19.07 57.94 44.65 32.17 39.65 39.86 46.58 48.67 45.47
1.34 1.24 28.95 63.91 13.58 13.13 13.06 14.75 14.16 31.85
13.21 12.73 22.82 24.71 16.5 15.45 18.83 20.94 23.11 26.47
0.97 0.87 6.29 14.54 2.93 2.02 3.59 5.77 6.66 8.31
5.53 5.42 19.78 20.5 10.52 11.45 16.0 16.2 17.5 26.87
0.98 0.92 2.49 6.86 1.9 1.55 1.22 1.71 6.37 6.76
0.76 1.15 8.73 14.35 2.97 3.42 2.64 4.66 5.15 6.44
0.06 0.1 0.96 0.46 0.11 0.06 0.49 0.43 0.55 0.38
0.1 0.02 1.97 1.61 0.17 0.42 1.09 1.0 1.58 1.34
20.96 18.38 89.68 72.77 30.97 37.79 51.88 57.05 53.29 87.81
18.45 17.08 30.89 45.05 10.58 10.05 18.25 20.51 21.58 38.21
1.75 1.76 5.54 5.25 2.82 2.78 3.08 3.49 3.91 4.65
0.0 0.0 4.4 3.09 0.12 0.36 0.0 0.23 0.61 0.81
0.02 0.05 0.71 0.57 0.19 0.37 0.21 0.14 0.66 0.69
11.97 12.57 38.31 56.46 14.46 12.33 22.82 22.63 24.17 43.65
3.96 3.04 9.36 12.49 1.76 3.79 0.91 3.86 6.37 16.06
19.92 23.43 54.4 70.31 32.25 30.28 34.42 43.97 45.31 62.2
10.39 10.21 33.56 28.25 16.97 18.14 16.33 30.4 25.66 33.21
11.92 11.76 35.77 30.25 17.3 18.2 18.89 24.49 23.36 32.37
6.49 6.78 48.59 34.24 28.42 30.46 26.44 37.47 34.9 42.43
9.27 11.64 23.97 30.88 13.42 13.17 14.42 22.34 16.11 32.06
21.81 21.79 67.79 59.18 33.34 44.19 42.93 56.81 53.28 63.23
10.15 11.89 29.81 26.19 3.75 3.32 9.47 12.18 13.3 42.67
1.29 1.17 5.02 15.39 3.36 3.67 5.22 4.82 5.4 6.91
14.8 13.93 27.16 27.25 15.12 18.28 14.4 18.83 15.95 22.48
6.73 7.25 13.59 14.84 7.24 7.2 14.11 10.08 11.28 12.98
2.94 2.71 25.2 39.06 12.91 13.43 13.16 12.34 15.32 16.92
27.38 32.87 78.88 90.63 17.81 17.19 51.21 56.45 63.01 74.48
12.38 14.62 30.97 35.78 27.45 29.01 31.82 31.58 31.36 29.61
56.89 61.7 105.91 108.16 80.9 62.72 78.01 86.18 82.31 113.77
33.29 37.0 168.33 280.84 131.26 161.55 109.66 128.61 190.44 228.15
10.98 10.9 51.33 92.47 47.95 39.96 33.17 43.95 47.19 91.17
0.0 0.0 2.1 1.72 0.32 0.55 1.14 0.93 0.84 1.22
0.0 0.05 3.6 3.51 0.45 0.34 0.28 1.16 0.54 4.18
23.49 21.36 24.82 46.33 34.85 30.02 29.47 28.44 35.58 40.55
1.13 1.74 12.28 19.55 2.34 1.15 2.48 6.11 4.98 21.64
9.64 10.27 17.99 32.24 9.44 9.54 12.46 13.2 13.35 25.94
44.36 47.21 114.02 157.36 60.99 78.37 74.72 87.35 107.17 119.42
19.18 17.81 47.88 39.68 26.76 19.12 21.77 34.16 33.53 55.55
0.34 0.36 2.85 2.57 1.14 1.01 0.43 1.88 1.78 1.98
1.62 1.85 15.33 11.03 6.67 8.43 9.26 11.9 10.76 17.29
3.94 2.94 31.16 18.02 17.54 21.5 30.45 27.32 29.38 34.84
31.25 32.24 56.0 61.27 52.35 48.31 44.69 53.4 57.63 64.62
0.02 0.08 2.41 1.98 0.48 0.97 1.01 2.29 1.87 2.37
18.63 19.08 35.6 55.12 17.13 14.42 25.9 23.45 29.12 40.16
2.45 4.22 26.64 68.81 18.75 23.95 17.16 19.97 18.98 33.1
0.0 0.16 4.2 3.69 0.54 0.3 0.45 0.87 1.23 3.2
0.0 0.0 17.53 14.34 6.51 7.32 6.76 9.26 10.66 14.99
27.78 32.56 92.81 99.62 46.5 50.32 46.45 66.79 61.18 109.21
1.08 0.74 8.13 15.63 4.48 3.29 5.91 7.96 6.59 7.87
3.55 3.84 16.94 19.03 3.99 5.41 5.34 8.31 11.82 15.7
0.0 0.0 1.51 5.54 0.52 1.11 0.49 1.01 0.91 2.45
0.77 0.75 16.19 11.89 1.81 2.21 0.36 1.54 3.85 8.14
7.3 9.08 80.22 108.85 15.92 17.28 27.57 40.25 48.3 93.17
5.09 5.91 31.15 43.64 12.13 14.05 17.42 20.74 23.0 34.15
3.61 4.39 21.05 13.57 11.32 14.03 10.08 14.44 18.15 21.95
6.85 6.37 66.61 65.64 16.97 21.23 22.26 31.23 29.42 59.14
0.05 0.1 3.34 1.31 1.16 1.78 0.7 1.59 1.78 2.44
13.42 13.76 21.79 31.61 17.86 15.99 20.86 22.14 22.08 26.51
1.76 2.01 5.51 9.63 2.89 2.06 1.64 2.57 2.7 7.59
11.85 13.09 147.55 207.76 82.21 66.3 77.55 92.56 100.48 163.67
4.33 3.01 15.39 15.25 2.71 5.33 7.91 7.33 8.57 13.76
0.0 0.0 0.33 0.07 0.13 0.05 0.0 0.06 0.23 0.27
7.41 7.51 14.35 14.55 5.89 9.61 8.93 7.51 9.14 9.89
23.88 21.45 82.89 77.67 60.72 64.51 68.91 65.9 69.06 89.86
0.37 0.14 1.49 1.04 0.62 0.67 1.09 1.02 1.17 1.36
10.11 10.21 26.3 21.92 17.58 21.98 21.71 22.84 28.08 27.19
18.23 13.68 40.92 20.44 8.22 10.81 20.83 27.15 34.46 58.28
1.41 0.22 265.37 85.82 15.7 40.19 4.7 51.11 69.81 172.63
2.59 3.31 12.66 10.43 5.2 6.09 6.58 9.25 6.43 11.75
0.39 0.35 19.51 22.58 12.57 18.13 14.17 24.02 24.55 35.49
5.02 4.69 40.11 40.85 3.59 4.28 8.49 21.04 19.79 24.75
1.2 1.3 10.92 6.24 6.49 8.38 5.19 8.61 7.18 13.55
6.64 7.2 28.86 40.03 17.12 15.69 22.79 24.81 26.21 29.0
0.39 0.45 11.48 39.89 5.93 4.94 4.39 6.81 4.94 21.0
1.4 1.48 5.3 6.53 1.24 1.89 2.7 2.13 4.87 5.13
12.74 14.46 39.62 55.63 30.18 32.24 21.18 27.5 40.94 65.87
18.21 17.98 72.66 100.2 71.31 53.96 97.05 95.23 89.02 135.99
1.98 2.88 113.8 350.88 74.7 94.52 50.29 98.76 177.82 280.19
0.0 0.0 37.63 42.6 23.78 25.26 29.52 55.85 38.34 78.04
3.37 3.82 93.88 74.47 39.43 63.16 50.1 63.52 64.38 67.79
9.63 12.99 29.46 50.47 23.21 20.68 21.13 31.66 26.0 43.79
3.27 3.41 15.72 17.5 7.94 5.07 11.64 11.62 10.7 12.29
11.95 14.04 39.48 40.13 7.91 7.33 20.2 27.57 28.24 57.32
3.99 3.8 33.66 34.57 11.14 8.81 14.68 23.84 23.89 41.96
8.15 6.53 14.51 13.81 9.57 9.63 7.41 11.55 11.75 12.66
39.56 39.29 84.43 86.84 48.94 54.11 55.07 70.92 70.11 87.59
13.96 15.07 65.24 52.29 29.19 23.24 26.6 35.87 35.61 66.92
4.97 5.21 6.61 9.35 4.88 8.11 8.87 7.78 9.97 10.33
0.81 0.96 3.22 3.47 2.16 2.72 1.84 2.9 3.28 3.23
6.59 6.49 49.03 58.06 27.24 27.97 18.2 33.4 47.77 70.38

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)