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Heatmap: Cluster_20 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
2.21 2.35 - - - - - -2.72 - -3.22
2.62 1.94 - - - - - - - -
2.11 2.11 -5.42 -4.67 -0.71 -0.49 - - - -
2.4 2.24 - - - - - - - -
1.56 1.54 -0.69 -1.3 -0.58 -0.45 -1.27 -0.98 -1.05 -1.73
2.47 2.15 - - - - - - - -
2.13 2.12 - -1.23 - - -1.8 -1.27 -3.56 -3.91
2.26 2.37 -5.13 - - - - - - -
1.63 1.81 -1.77 -1.84 -0.48 -1.12 -0.89 -1.01 -1.53 -1.87
1.73 2.43 - -2.55 -1.64 -1.02 -1.73 - - -
2.79 1.63 - - - - - - - -
2.79 1.63 - - - - - - - -
1.53 1.63 -0.89 -1.1 -0.61 -0.69 -1.27 -1.28 -1.17 -1.14
1.95 2.14 -5.54 -4.48 -0.41 -0.31 -4.82 -5.24 -5.83 -6.34
2.13 2.17 -4.97 -4.8 -1.22 -0.93 -5.03 -5.29 -7.06 -5.82
2.08 2.53 - - - - - - - -
1.16 1.66 -1.13 -0.9 -2.2 -2.16 -0.16 -0.3 -0.43 -0.5
2.15 1.81 -3.44 -2.65 -1.21 -1.17 -2.3 -2.03 -2.02 -2.02
2.58 2.01 - - - - - - - -
2.14 2.1 -1.55 -2.77 -4.03 -3.44 -3.73 -2.28 -2.16 -2.67
2.33 2.17 - - - -1.12 - - - -
2.4 2.24 - - - - - - - -
2.31 2.26 - -4.64 - - -3.56 -3.82 -3.97 -5.94
1.41 2.7 - - - - -1.94 -1.79 - -1.72
1.99 1.87 0.77 - - - - - -0.63 -
2.01 2.46 -2.2 - - - - -2.08 - -
2.28 2.1 -5.46 -2.48 -4.43 -3.5 - -1.82 -3.26 -3.12
2.28 2.16 - - -1.88 -1.69 - -5.46 -4.65 -4.41
2.49 2.12 - - - - -6.79 -7.64 - -7.57
2.05 2.02 -7.25 -1.15 -1.96 -1.17 - -3.96 -4.72 -0.89
1.99 1.9 -3.45 -3.44 -0.36 0.38 -5.86 - - -
1.8 1.71 -0.41 -1.88 -1.26 -1.66 -0.9 -1.27 -1.44 -2.59
2.51 2.09 - - - - - -4.58 - -
1.94 1.65 -3.81 0.71 -3.62 -4.83 -1.79 -1.37 -2.24 -1.72
1.57 2.02 -3.11 -2.51 -1.16 -1.19 -1.21 -1.77 -0.99 -0.82
1.89 2.47 - - -1.73 -1.14 - - - -
1.85 2.68 - - - - - - - -
1.8 1.79 -3.11 0.19 -3.75 -4.46 -2.2 -1.0 -1.18 -0.93
2.21 2.25 -4.71 - -2.74 -2.14 -2.91 - -4.94 -4.27
2.09 2.18 - - - -3.13 -0.89 -1.15 - -3.25
1.96 2.48 -4.89 -3.37 -5.96 -4.36 -5.15 -2.55 -3.86 -3.7
2.01 2.14 -6.23 -2.86 -1.27 -1.4 -1.92 -2.39 -2.79 -4.59
2.05 2.05 - -3.96 -5.16 -3.97 -0.85 -1.7 -1.02 -2.36
2.44 2.11 -7.31 -4.89 -7.96 -5.04 -3.89 -4.61 -4.17 -6.92
1.86 1.7 -6.27 -1.01 -1.4 -1.03 -1.58 -1.33 -1.56 -0.57
2.46 2.16 - - - - -7.34 -8.19 -6.78 -
2.65 1.61 -5.32 -1.56 - - -4.43 -3.7 - -2.48
1.88 1.47 -1.45 -0.64 -3.13 -2.98 -0.88 -0.73 -0.5 -1.16
2.07 2.54 - - - - - - - -
2.31 2.32 - - - - - - - -3.83
2.41 2.07 -5.27 -3.11 -2.9 - -3.33 - -4.36 -4.12
1.77 2.43 -5.97 -1.42 -3.08 -3.27 -2.39 -3.01 -2.83 -3.18
2.18 2.43 - - - - - - -3.89 -
2.21 2.27 - - -2.61 -3.58 - -3.14 -4.32 -2.67
1.79 1.66 -0.98 -2.67 -0.44 -0.33 -1.18 -1.85 -1.84 -2.31
1.79 1.69 -3.85 -1.48 -0.62 -0.27 -1.7 -1.22 -1.78 -1.42
1.84 2.65 -6.13 - -5.07 - -5.16 -4.01 -6.19 -6.54
1.25 2.67 - - - 0.34 - - - -
2.2 2.44 - - - - - - - -
2.27 2.33 - - - - - -2.76 - -
3.32 - - - - - - - - -
1.67 2.44 - - - - - - -1.6 0.08
2.26 2.15 -7.15 -5.82 -1.8 -1.19 -8.18 -6.44 -8.21 -7.97
2.43 1.94 - - -0.43 - - - - -
1.37 2.27 -1.01 - - - - -0.0 -0.44 -1.52
2.12 2.4 - - - - - -2.55 -2.15 -
2.36 2.16 - - - - -1.65 -4.08 - -
2.4 2.23 - - - - - - - -
1.67 1.82 -1.09 -1.33 -1.1 -1.22 -1.15 -1.64 -1.56 -1.33
2.49 2.13 - - - - - - - -
2.56 2.03 - - - - - - - -
2.36 2.26 - -6.86 -4.28 - - - - -5.3
2.43 1.86 -4.37 -3.68 -1.28 -3.41 -3.95 -3.12 -2.98 -5.06
2.19 1.49 -3.48 -2.58 -2.17 -3.35 -0.73 -0.81 -0.99 -1.43
1.69 2.01 -4.91 -2.43 - -4.63 -2.6 0.02 -0.39 -0.9
2.06 2.0 -3.58 -1.83 -2.95 -3.92 - -0.8 -2.1 -1.12
2.4 2.23 -7.84 -6.43 - - - - -6.85 -7.41
2.33 2.0 -2.12 -2.69 -2.83 -4.8 - -2.39 -2.98 -3.59
2.23 2.18 -3.27 - -1.66 - - - -1.82 -3.75
1.97 1.9 -3.67 -1.73 -3.11 -3.37 -0.49 -1.2 -1.38 -2.12
2.4 2.24 - - - - - - - -
2.2 2.08 -7.95 -7.79 -1.3 -0.47 - -7.2 -5.51 -6.32
2.79 1.62 - - - - - - - -
1.63 1.84 -2.2 0.1 -1.2 -1.12 -2.41 -2.24 -2.44 -0.84
2.34 2.16 - -2.05 - - - -3.09 -3.27 -
2.37 1.94 -1.43 - - -0.74 - - - -
1.52 1.91 -3.13 -2.08 -1.89 -2.76 0.22 -0.72 -1.33 -1.24
2.66 1.78 - - - - - - -2.06 -
2.26 2.24 -3.04 -4.5 -3.29 -3.19 -4.83 -5.68 -5.39 -5.05
2.35 2.07 - - -2.5 -5.47 - -5.03 - -1.04
1.73 2.73 - - - - - -4.66 - -
2.13 1.86 -1.9 -3.33 - - - -0.33 -1.51 -1.05
1.37 2.32 -1.78 0.19 -2.71 -3.09 - -1.65 -1.83 -3.18
1.72 1.92 -1.75 -1.68 -0.38 -0.3 -2.84 -2.47 -2.4 -2.2
1.97 1.97 -2.42 -2.22 -0.53 -0.36 - -2.62 - -3.12
2.31 2.03 -5.86 -3.67 -4.3 -4.69 -5.04 -1.89 -1.82 -2.32
2.56 2.0 - -6.48 - - -6.82 -4.87 -4.25 -5.87
1.37 1.49 -0.75 -0.98 -0.64 -0.6 -0.8 -0.83 -0.82 -0.99
1.39 2.07 -0.75 -2.17 -4.87 -3.25 -0.28 -0.58 -0.76 -2.77
2.21 2.2 -6.26 -6.36 -1.36 -1.44 -7.91 -8.76 -8.94 -
1.97 2.6 - - - - - - -4.86 -
2.01 2.58 - - - - - - - -
1.83 2.48 - - -2.62 -2.8 - -2.77 -1.65 -3.51
1.79 2.54 - - - -3.67 - - -1.09 -2.76
2.0 2.56 - -4.21 - -4.75 - - - -
2.2 2.37 -5.54 -4.36 - -6.96 -3.72 -5.58 -4.43 -7.09
2.26 2.09 -2.6 -4.24 -1.89 -1.26 -6.82 - - -6.61
2.18 1.62 -3.13 -2.17 -0.47 -1.04 -0.98 -2.67 -2.85 -3.94
2.19 2.23 - -6.89 -1.58 -1.38 - - - -9.13
2.38 2.26 - - - - - - - -
2.0 2.46 -4.1 -2.16 -5.41 -6.8 -4.55 -4.81 -4.99 -4.33
1.05 2.99 - - - - - - - -
1.53 1.17 -0.86 -0.34 -1.44 -1.9 -0.1 -0.57 -0.75 -0.54
2.58 2.0 - - - - - - - -
2.49 2.13 - - - - - - - -
2.56 2.02 - - - - -4.95 -6.38 - -
2.53 2.07 - - -8.6 - - - - -
2.63 1.92 - - - - -6.18 -7.33 -6.33 -7.02
2.79 1.62 - - - - - - - -
2.22 2.21 -6.53 -7.36 -7.46 -8.84 -2.52 -2.57 -2.43 -2.58
2.11 2.46 -8.95 -7.57 -7.88 - -4.28 -5.55 -4.1 -5.3
2.24 2.36 - - - - - -4.45 - -3.4
1.81 1.8 -2.46 -2.37 -0.67 -0.84 -2.56 -1.01 -1.11 -1.71
2.05 2.11 -2.86 -1.38 -4.12 -4.92 -1.22 -2.48 -2.25 -3.43
2.45 1.52 - 0.45 - - - - - -1.67
2.1 2.23 -1.59 -1.42 - - - - -1.67 -
2.01 1.7 -2.21 -0.44 - -3.61 -2.37 -0.42 -1.4 -1.42
2.35 2.21 - -2.93 - -7.39 -4.51 -5.81 -5.33 -4.32
2.44 2.2 - - - - - - - -
2.79 1.62 - - - - - - - -
1.87 2.67 - - - - -8.61 -11.04 - -11.56
1.83 2.51 - -2.97 - -3.32 - -3.91 -4.09 -1.34
2.1 2.38 - - - - - - - -1.01
2.32 2.17 -2.15 -4.82 -3.97 -2.94 -5.68 -5.94 -6.12 -
1.81 1.99 -1.2 -0.81 -2.06 -1.94 -1.28 -2.0 -2.59 -2.41
2.13 2.4 - - - - - -1.47 - -
2.59 1.93 - -6.48 -3.3 -4.84 -6.74 -7.59 -6.77 -8.11
1.79 2.24 -3.06 -1.5 -4.79 -4.77 -3.93 -1.08 -1.05 -2.08
2.21 2.02 -3.96 -0.58 -3.78 -4.02 -2.5 -2.93 -3.11 -4.64
1.57 1.94 -3.45 -1.03 -1.18 -1.57 -1.23 -1.14 -1.25 -0.91
2.37 2.26 - -6.0 - -8.43 - - -7.57 -5.34
2.11 2.4 -1.86 -5.34 - - - - -5.57 -3.91
0.6 2.64 -2.66 -0.91 -2.63 -3.02 - -0.6 -2.78 -1.12
2.34 1.82 -2.17 - - -2.56 - -1.16 -1.34 -2.68
1.81 1.83 -3.25 -0.68 -0.68 -1.86 -2.24 -2.29 -2.22 -0.51
1.72 1.86 -0.44 -1.03 -3.83 -2.2 -1.42 -1.7 -1.12 -1.28
1.91 2.07 - -0.16 -0.24 - - - - -1.7
2.17 1.67 -1.83 -3.67 -1.76 -2.56 -1.86 -0.9 -2.3 -1.07
1.92 2.26 -3.32 -2.16 - - - -1.64 -1.08 -1.75
1.98 2.56 - -3.84 - -5.41 - -4.01 - -
2.29 1.73 -0.94 -1.94 -4.05 -4.44 -1.58 - -4.19 -0.95
1.97 2.61 - - - - - - - -
2.0 2.05 0.36 - - - - -0.75 - -
2.29 1.45 -3.95 -2.46 -3.91 -2.49 -0.45 -1.56 -0.74 -2.4
1.81 2.62 - - -2.3 -2.69 - - - -
2.06 2.53 - -5.16 - - - - - -
2.15 1.96 - - -0.22 -0.28 - - - -
2.53 2.06 -5.23 - - -5.51 - - - -
2.16 1.9 - -0.54 - - - - -1.42 -0.44
2.43 2.18 - - - - - -3.76 - -
2.38 2.14 -3.8 -3.63 -6.38 -5.18 -5.51 -3.04 -3.96 -5.88
2.48 1.88 -4.15 -2.92 -8.51 -8.9 -2.34 -3.48 -2.82 -3.02
2.4 2.15 - - -4.31 -2.69 - -4.27 - -
1.62 1.64 -2.83 -1.62 -3.01 -0.87 -2.33 -0.4 -0.37 -0.09
1.84 1.88 -2.64 -1.54 -2.04 -2.42 -0.01 -1.31 -3.0 -1.75
2.37 2.26 - - -4.7 - - - - -
2.4 2.24 - - - - - - - -
1.62 2.26 - -3.1 -0.89 -2.59 -1.32 -1.16 -1.34 -3.69
2.57 1.99 - -5.85 - - -5.15 - -6.18 -
1.8 1.88 -0.6 -0.69 -4.04 -3.44 -1.24 -2.94 -2.5 -0.54
2.12 2.33 - - -2.66 -4.08 -1.32 - - -
2.03 2.49 - - - - - - - -1.67
1.77 2.43 -1.49 -0.28 - - - - - -
2.4 2.24 - - - - - - - -
1.68 1.25 -0.67 -0.81 -0.96 -0.49 -0.53 -1.26 -1.2 -1.14
2.53 1.69 - - - -4.01 -0.47 -3.65 -3.82 -4.15
2.64 1.91 - - - - - - - -
1.33 2.9 - - - - - - - -
2.19 2.35 -3.58 - - - - - -3.31 -2.48
2.35 2.3 - - - - - - - -
1.39 2.37 - -2.22 - - - -1.28 -0.46 -0.23
2.29 2.35 - - - - - - - -
2.26 1.68 -2.83 -2.32 -5.51 -5.67 -1.03 -1.4 -1.36 -1.36
2.61 1.96 - - - - - - - -
2.12 2.32 -3.15 -2.86 -3.08 -2.92 -4.05 -3.89 -5.07 -
1.76 2.72 - - - - - - - -
1.36 2.15 -0.97 -0.34 -2.51 - - -2.46 -0.05 -1.4
2.47 1.96 -4.06 -1.82 -3.42 -3.84 -6.69 -5.72 -7.71 -4.36
2.46 1.95 - - - - - - -2.03 -1.37
2.05 2.49 - -2.44 - - - -3.56 - -
1.9 2.23 - -1.05 -2.22 -2.03 - -3.22 -1.39 -2.73
2.47 2.16 - - - - - - - -
1.95 1.7 -4.83 -1.28 -3.15 -3.53 -0.91 -0.57 -0.94 -0.99
1.98 1.68 -2.49 -0.17 -2.41 -4.79 -2.5 -1.17 -1.35 -0.87
2.28 2.05 - - -1.3 -0.94 - -4.4 - -4.94
2.05 2.26 - -2.66 -4.39 - -2.52 - -1.96 -1.19

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.