Heatmap: Cluster_48 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g02270.1	-2.56	-2.56	0.52	-0.74	0.48	0.84	0.01	0.38	0.12	0.08
Bradi1g03110.2	-4.7	-3.44	0.36	0.36	0.67	0.69	-0.66	0.01	-0.19	0.65
Bradi1g06036.2	-5.04	-5.34	0.48	-0.76	0.24	0.59	-0.12	0.25	0.37	0.9
Bradi1g07070.2	-1.5	-1.46	0.24	-0.91	0.53	0.74	0.06	0.36	0.14	0.03
Bradi1g08140.1	-8.14	-8.3	0.3	0.63	0.73	0.84	-0.61	0.1	-0.27	0.27
Bradi1g11171.1	-3.47	-1.91	0.49	-0.15	-0.4	1.47	0.24	-0.41	-1.4	0.58
Bradi1g12061.1	-3.09	-3.67	-0.67	-0.7	1.09	1.48	0.18	-0.26	0.19	-0.9
Bradi1g12110.2	-1.28	-1.21	-0.0	-0.09	0.63	0.52	-0.31	-0.05	0.19	0.4
Bradi1g15180.1	-1.07	-1.01	0.54	-0.43	0.34	0.54	0.02	0.06	0.24	-0.18
Bradi1g15850.1	-2.88	-2.9	0.43	1.08	0.41	0.65	-0.68	-0.3	-0.15	0.04
Bradi1g16240.2	-0.73	-0.54	0.34	-0.07	0.53	0.44	-0.02	-0.1	-0.13	-0.21
Bradi1g17480.1	-6.22	-5.59	1.27	-0.43	0.15	0.61	-0.54	0.05	-0.38	0.75
Bradi1g21290.1	-6.26	-6.43	1.05	-0.07	0.8	0.99	-0.61	-0.05	-0.15	-0.47
Bradi1g22077.1	-1.52	-1.41	0.38	0.41	0.09	0.44	-0.99	0.16	-0.18	0.79
Bradi1g23070.1	-1.77	-1.94	0.48	-0.45	0.18	0.43	-0.6	0.44	0.54	0.45
Bradi1g24140.1	-1.93	-1.89	-0.31	0.34	0.53	0.61	0.13	0.11	0.25	0.09
Bradi1g27050.1	-0.6	-0.43	0.26	0.09	0.13	0.33	-0.05	0.07	0.13	-0.2
Bradi1g27120.1	-6.83	-6.14	0.98	-0.48	0.99	0.28	-0.28	0.08	0.13	0.15
Bradi1g27990.1	-1.52	-1.48	0.32	0.27	0.24	0.34	0.12	0.1	0.01	0.3
Bradi1g28000.1	-0.77	-0.66	-0.15	0.46	0.61	0.38	-0.25	-0.07	-0.4	0.17
Bradi1g29550.8	-1.78	-1.76	0.32	-0.63	0.4	0.61	0.16	0.38	0.26	0.09
Bradi1g30430.2	-1.75	-1.75	0.25	0.01	0.5	0.73	-0.47	0.15	-0.03	0.42
Bradi1g30520.1	-1.2	-1.03	0.23	0.26	0.57	-0.41	0.11	0.26	0.15	0.11
Bradi1g30970.1	-0.88	-0.73	0.14	0.26	0.32	0.32	-0.09	-0.12	0.01	0.24
Bradi1g31090.1	-0.54	-0.52	-0.03	0.07	0.24	0.28	-0.24	-0.02	0.26	0.2
Bradi1g35490.1	-0.6	-0.62	-0.37	0.27	0.47	0.88	-0.73	-0.53	-0.04	0.28
Bradi1g36460.1	-1.95	-2.07	0.17	0.42	0.54	0.52	-0.51	-0.18	0.03	0.64
Bradi1g36550.3	-2.2	-2.47	0.46	-0.8	0.22	0.8	0.15	0.27	-0.01	0.54
Bradi1g39510.1	-0.99	-0.84	0.22	-0.43	0.38	0.55	0.17	0.17	0.16	-0.17
Bradi1g40150.2	-2.9	-2.67	0.52	0.16	0.3	0.52	-0.12	0.35	-0.02	0.39
Bradi1g43430.1	-2.56	-2.6	-0.03	-0.97	0.85	1.03	0.15	0.27	0.1	-0.08
Bradi1g44510.1	-1.61	-1.6	0.68	-0.75	0.74	0.79	0.09	0.1	0.03	-0.77
Bradi1g44640.7	-2.86	-2.89	1.08	-0.36	0.72	0.42	-0.46	0.06	-0.12	0.24
Bradi1g47940.5	-0.3	-0.21	0.07	0.26	0.01	0.44	0.01	-0.07	-0.26	-0.13
Bradi1g48240.2	-1.17	-0.88	-0.13	-0.68	0.62	1.31	-0.68	-0.33	-0.35	0.33
Bradi1g48279.1	-3.77	-4.93	1.16	0.32	0.1	0.57	-0.61	0.02	-0.4	0.52
Bradi1g48540.1	-1.16	-0.97	-0.18	0.19	0.45	0.37	0.11	0.16	0.07	0.17
Bradi1g51790.1	-1.18	-1.17	0.39	-0.14	0.54	-0.33	-0.07	0.21	-0.18	0.73
Bradi1g52090.1	-0.95	-0.89	0.11	0.01	0.12	0.38	0.14	0.17	0.08	0.25
Bradi1g54440.1	-2.51	-2.41	0.73	-1.09	0.45	0.83	-0.07	0.41	0.07	0.04
Bradi1g55300.2	-1.35	-1.28	-0.11	0.11	0.57	0.21	-0.12	0.1	-0.1	0.7
Bradi1g57060.1	-1.88	-1.59	0.88	-0.3	0.55	0.99	-0.31	-0.15	-0.06	-0.66
Bradi1g60700.1	-1.25	-0.99	0.01	0.32	0.46	0.2	-0.0	0.19	-0.04	0.25
Bradi1g63640.1	-2.35	-2.58	0.3	-0.01	0.23	0.86	-0.36	0.28	0.27	0.29
Bradi1g63720.3	-	-	0.66	-0.28	0.87	0.73	-0.11	0.31	-0.18	0.07
Bradi1g64630.2	-1.92	-1.58	1.08	0.15	0.31	0.41	-0.58	-0.15	-0.46	0.38
Bradi1g66345.2	-0.25	-0.53	0.56	-0.28	-0.68	0.85	-0.55	0.06	-0.05	0.08
Bradi1g66900.1	-2.16	-1.95	0.44	0.29	0.44	0.44	-0.4	0.25	-0.26	0.53
Bradi1g66916.2	-1.62	-1.52	0.39	0.05	-0.22	1.15	-0.01	-0.28	0.08	0.05
Bradi1g68520.1	-1.54	-1.47	0.47	0.29	0.11	0.54	-0.13	-0.04	-0.11	0.42
Bradi1g69571.2	-2.06	-1.96	0.19	-0.03	0.9	0.54	0.09	0.13	0.24	-0.49
Bradi1g70700.1	-7.23	-7.39	0.7	0.24	0.55	1.46	-1.92	-1.33	-1.25	0.91
Bradi1g70740.1	-0.81	-0.33	-0.64	-0.06	0.51	0.86	-0.15	-0.2	-0.1	0.13
Bradi1g72727.1	-5.07	-	0.43	-0.84	0.52	1.1	-0.56	0.42	-0.14	0.64
Bradi1g77420.1	-1.03	-1.05	0.46	0.51	0.38	0.45	-0.73	-0.14	-0.08	0.15
Bradi1g78420.2	-1.66	-1.53	0.52	-0.13	0.28	0.17	-0.08	0.23	0.05	0.59
Bradi2g01387.1	-7.05	-7.14	0.01	0.41	0.75	0.6	-0.13	0.24	-0.24	0.6
Bradi2g04700.1	-7.64	-8.4	0.75	0.93	0.58	0.81	-1.47	-0.16	0.08	-0.27
Bradi2g05880.1	-5.34	-5.51	1.13	0.05	0.75	0.38	-0.44	-0.26	-0.62	0.61
Bradi2g08050.1	-2.06	-1.66	0.41	-0.39	0.51	0.58	0.07	0.36	0.03	0.1
Bradi2g12830.1	-1.35	-1.65	0.86	-1.35	-0.06	1.21	-0.96	0.06	-0.36	0.57
Bradi2g13110.1	-2.98	-2.85	-0.2	0.73	1.15	0.73	-2.01	-0.94	-0.59	0.92
Bradi2g17360.1	-7.11	-6.86	0.97	-0.8	0.8	0.8	0.13	0.35	-0.22	-0.43
Bradi2g23160.1	-	-	-	-0.4	0.9	1.77	-3.99	0.17	0.5	0.45
Bradi2g23730.1	-0.72	-0.81	0.65	-0.78	0.44	0.2	-0.14	0.14	0.19	0.03
Bradi2g23940.1	-	-9.43	0.55	-0.37	0.68	0.63	0.05	0.79	-0.02	-0.23
Bradi2g25507.1	-2.36	-2.47	-0.06	-0.09	0.69	0.86	-0.31	0.29	0.24	0.12
Bradi2g28000.1	-1.22	-1.38	0.51	0.04	0.62	0.06	-0.22	-0.02	0.15	0.26
Bradi2g30390.3	-1.72	-1.58	-0.17	-0.21	-1.16	0.88	0.19	0.99	0.28	-0.04
Bradi2g31490.1	-2.7	-2.72	0.57	0.05	0.74	0.23	-0.58	-0.12	0.3	0.59
Bradi2g35180.1	-1.04	-0.89	0.57	0.06	0.24	0.41	-0.18	0.01	-0.03	0.1
Bradi2g37850.1	-4.72	-6.11	0.09	-0.1	0.54	0.55	0.12	0.54	-0.19	0.69
Bradi2g41300.1	-1.71	-1.58	0.01	-0.03	0.57	0.53	0.12	0.3	-0.1	0.27
Bradi2g45080.3	-4.78	-4.62	0.51	-1.47	0.24	1.05	-0.03	0.56	-0.54	0.8
Bradi2g45970.5	-1.97	-2.68	0.26	-1.13	0.48	1.38	-0.68	-0.09	0.1	0.39
Bradi2g47110.1	-7.85	-8.01	0.02	0.42	0.92	0.69	-0.43	0.4	-0.24	0.3
Bradi2g51610.1	-1.23	-0.99	-0.53	-1.02	0.7	1.1	-0.56	-0.06	0.38	0.24
Bradi2g52336.1	-	-	-4.61	0.84	0.92	1.69	-2.36	-0.77	-0.06	0.38
Bradi2g53190.4	-2.1	-2.16	0.27	-0.35	0.21	1.11	-0.65	0.16	0.24	0.39
Bradi2g54900.1	-3.49	-3.65	0.72	0.42	0.56	0.41	-0.43	-0.42	-0.03	0.65
Bradi2g55210.1	-1.13	-1.04	0.58	-0.6	0.58	0.47	-0.0	0.13	0.04	-0.15
Bradi2g55650.1	-1.1	-0.84	0.7	-0.42	0.08	0.75	-0.08	0.3	0.22	-0.93
Bradi2g55950.2	-1.4	-1.29	0.01	0.1	0.49	0.43	0.34	0.04	0.03	0.08
Bradi2g56920.3	-2.28	-2.32	0.35	-0.57	0.97	0.93	-0.02	-0.22	0.48	-0.86
Bradi2g58887.2	-5.22	-6.39	0.52	-0.6	1.01	0.81	-0.06	0.28	-0.06	-0.04
Bradi2g60740.1	-2.18	-1.86	0.63	-0.19	0.76	0.74	-0.05	0.04	-0.15	-0.29
Bradi2g61600.1	-	-	0.65	0.08	0.99	1.41	-	-1.43	-0.65	0.78
Bradi2g61607.1	-	-	-0.25	-0.05	1.47	2.15	-	-4.77	-1.77	-0.62
Bradi3g00377.1	-5.34	-5.27	0.9	-0.9	0.2	0.44	-0.27	0.27	0.41	0.76
Bradi3g02110.2	-2.13	-2.4	0.91	-0.26	0.45	0.51	-0.21	0.06	0.14	0.09
Bradi3g04467.1	-1.21	-1.21	0.39	0.28	0.19	0.37	-0.48	0.1	0.09	0.42
Bradi3g05626.1	-1.97	-1.87	0.87	-0.73	1.03	0.9	-0.12	-1.22	-0.06	-0.29
Bradi3g06250.1	-0.93	-0.79	0.07	0.12	0.45	0.31	-0.02	0.21	-0.07	0.07
Bradi3g08317.1	-3.64	-3.32	0.65	-2.52	0.38	0.89	0.34	0.46	0.06	0.3
Bradi3g09850.1	-3.13	-3.54	0.99	0.05	0.43	1.09	-1.27	-0.24	-0.59	0.46
Bradi3g10127.1	-3.64	-3.65	0.66	-0.99	1.26	1.03	-0.45	-0.04	-0.1	-0.59
Bradi3g10810.1	-4.14	-3.56	-0.81	-0.15	0.82	1.31	-0.65	-0.04	0.21	0.46
Bradi3g12820.5	-0.84	-0.81	0.03	0.08	0.38	0.3	0.05	0.06	0.03	0.22
Bradi3g13110.1	-1.85	-1.68	0.48	-0.38	0.47	0.37	-0.29	0.49	0.19	0.28
Bradi3g13140.4	-2.22	-2.06	0.62	-0.31	0.81	-0.12	-0.17	0.31	0.01	0.48
Bradi3g14960.5	-1.21	-1.07	-0.34	0.22	0.57	0.57	-0.17	0.06	-0.03	0.34
Bradi3g16640.1	-3.5	-3.35	0.3	0.4	0.9	0.71	-1.21	0.13	-0.3	0.51
Bradi3g25921.1	-2.9	-2.63	0.36	0.03	0.51	0.48	-0.73	0.28	0.26	0.65
Bradi3g26958.1	-1.76	-1.75	0.74	-0.77	0.47	0.52	0.28	0.12	-0.0	0.03
Bradi3g27890.3	-4.75	-4.39	1.11	0.7	0.19	0.5	-0.86	-0.29	-0.62	0.64
Bradi3g28309.1	-3.99	-4.15	1.16	-0.61	0.13	1.16	-0.64	-0.07	0.39	-0.39
Bradi3g28730.2	-3.99	-3.79	0.38	0.37	0.74	0.96	-0.78	-0.19	-0.12	0.36
Bradi3g29797.1	-6.96	-8.45	0.51	-0.67	-1.03	1.16	0.22	0.87	-0.29	0.49
Bradi3g29970.1	-0.84	-0.8	0.23	-0.51	0.51	0.59	-0.12	0.14	0.01	0.06
Bradi3g30730.2	-1.71	-2.96	0.91	0.61	0.27	0.55	-1.63	0.09	0.13	0.01
Bradi3g32150.1	-1.33	-1.15	0.23	-0.11	0.38	0.65	-0.09	0.12	0.01	0.2
Bradi3g32640.3	-6.49	-7.24	-1.04	0.42	1.14	1.55	-1.68	-0.34	-0.35	0.19
Bradi3g35746.2	-6.87	-9.36	0.53	0.47	0.56	0.84	-0.71	0.72	-0.34	-0.23
Bradi3g37500.2	-2.48	-2.62	1.04	-1.04	0.71	1.02	0.05	0.24	-0.17	-1.52
Bradi3g37623.1	-3.06	-2.59	0.1	0.97	0.76	0.57	-0.68	-0.26	-0.71	0.52
Bradi3g38110.1	-1.3	-1.41	0.29	0.0	0.72	0.61	-0.02	-0.1	0.09	-0.28
Bradi3g38591.1	-2.61	-2.94	0.25	0.6	0.65	0.59	-0.99	-0.1	-0.58	0.87
Bradi3g41600.4	-4.43	-4.31	0.87	0.73	0.79	1.11	-2.26	-1.18	-0.79	0.37
Bradi3g42690.3	-2.55	-2.44	0.8	-0.28	0.32	0.71	-0.29	0.15	0.18	0.18
Bradi3g42810.1	-	-6.51	0.54	0.63	0.72	1.21	-1.28	-0.66	-0.94	0.55
Bradi3g45990.1	-2.75	-2.8	1.11	-0.32	0.55	0.79	-0.98	-0.12	-0.18	0.32
Bradi3g46410.1	-1.03	-0.75	0.6	-0.0	0.24	0.56	-0.58	0.0	0.13	-0.01
Bradi3g47000.5	-0.94	-0.9	0.32	-0.04	0.2	0.46	-0.35	0.01	0.19	0.34
Bradi3g47280.1	-0.78	-0.52	0.24	-0.54	0.43	0.44	-0.35	0.13	0.07	0.28
Bradi3g49620.1	-2.37	-2.4	0.5	0.17	0.61	0.48	-0.1	0.06	0.18	0.07
Bradi3g52710.6	-5.06	-5.33	-0.26	0.16	0.65	0.67	0.41	0.5	0.29	-0.19
Bradi3g55020.1	-1.95	-2.12	-0.0	-0.78	0.55	0.7	-0.28	0.21	0.15	0.82
Bradi3g56930.1	-0.51	-0.5	0.2	-0.33	0.14	0.51	-0.0	0.18	-0.03	0.02
Bradi3g58240.1	-1.93	-2.01	0.25	-0.63	0.5	0.58	0.28	0.6	0.08	-0.05
Bradi3g58680.1	-8.6	-	1.17	-1.07	0.69	0.51	-1.94	-0.15	-0.2	1.14
Bradi3g58890.1	-	-	1.08	0.24	-1.51	0.88	-3.53	0.09	0.02	1.24
Bradi4g00320.1	-1.29	-1.22	0.14	-0.12	0.51	0.22	-0.4	0.28	-0.2	0.77
Bradi4g00480.1	-1.5	-1.25	0.3	-0.12	0.3	0.49	0.31	0.21	0.15	-0.09
Bradi4g02700.2	-0.42	-0.51	-0.36	-0.11	0.55	0.36	-0.16	-0.12	-0.05	0.4
Bradi4g03340.1	-7.2	-	0.03	-0.69	1.1	0.68	-0.49	0.83	0.15	-0.0
Bradi4g03530.2	-1.66	-1.34	0.44	-0.69	0.26	0.27	-0.42	0.58	0.54	0.28
Bradi4g03560.1	-0.61	-0.25	-0.19	-0.38	0.66	1.04	-0.87	-0.4	-0.56	0.31
Bradi4g04800.1	-1.12	-0.96	0.21	0.39	0.12	0.42	-0.06	0.11	0.18	-0.06
Bradi4g07527.1	-3.68	-3.36	0.41	0.13	0.5	0.81	-0.24	0.42	0.07	-0.01
Bradi4g07570.1	-11.18	-	0.98	-1.04	-1.44	1.43	-0.5	0.3	-0.72	0.95
Bradi4g08550.2	-1.13	-1.09	0.19	0.42	0.78	0.41	-0.59	-0.26	-0.39	0.36
Bradi4g09340.1	-2.49	-2.33	0.53	-0.29	0.45	1.05	-0.48	-0.09	0.01	0.34
Bradi4g12238.1	-1.27	-1.27	0.01	-0.01	0.23	0.52	0.22	0.25	0.19	0.09
Bradi4g13281.1	-2.87	-2.56	-0.1	-1.44	1.06	0.77	0.12	0.1	0.64	-0.18
Bradi4g25717.1	-1.99	-1.75	0.74	-1.04	0.8	0.6	0.38	-0.0	0.16	-0.7
Bradi4g29417.1	-	-	-0.77	-0.56	0.66	1.55	-	-1.07	0.77	1.04
Bradi4g29487.1	-1.8	-1.47	0.17	-0.37	0.82	0.42	0.36	-0.01	0.05	0.06
Bradi4g31030.1	-1.98	-1.66	-0.02	0.2	0.58	0.38	-0.08	0.11	0.18	0.42
Bradi4g31450.2	-5.31	-5.48	1.35	0.08	0.81	0.98	-1.39	-0.53	-0.32	-0.41
Bradi4g31900.2	-1.89	-1.91	0.76	0.12	0.4	0.73	-0.07	0.04	-0.11	-0.33
Bradi4g34700.1	-1.18	-1.33	-0.03	-0.24	0.43	0.04	0.2	0.58	0.11	0.31
Bradi4g34980.1	-2.19	-2.07	0.42	-0.02	0.5	0.56	-0.12	-0.04	-0.06	0.57
Bradi4g35700.1	-2.73	-2.05	1.08	0.4	0.1	0.17	-0.84	-0.27	-0.55	0.93
Bradi4g36060.1	-2.56	-3.17	1.02	-0.24	-0.08	0.99	-0.72	0.15	-0.91	0.73
Bradi4g36730.2	-2.21	-2.22	0.13	-0.24	0.75	0.79	0.08	0.2	0.01	-0.01
Bradi4g37943.3	-	-6.57	0.68	-0.5	0.93	0.81	0.04	0.34	0.09	-0.61
Bradi4g38037.2	-4.17	-5.09	0.53	0.01	0.32	0.71	0.13	0.44	-0.37	0.43
Bradi4g38430.1	-1.34	-1.32	0.04	-0.17	0.76	0.57	-0.28	-0.04	-0.13	0.48
Bradi4g40197.1	-0.87	-0.83	-0.11	0.07	0.61	0.6	-0.1	-0.07	0.12	-0.15
Bradi4g40700.1	-	-	-1.77	-0.88	1.47	1.51	-2.65	0.16	-0.48	0.63
Bradi4g43541.1	-	-	0.22	-0.6	0.85	0.81	0.33	0.59	0.36	-0.79
Bradi4g44145.1	-	-	0.82	-0.84	0.6	0.7	-0.07	0.55	0.22	-0.05
Bradi5g08990.1	-8.62	-7.79	0.98	0.84	-0.71	0.53	-0.46	-0.15	-0.36	0.82
Bradi5g10600.4	-0.8	-0.61	0.28	-0.01	0.29	0.52	0.01	0.13	-0.1	-0.2
Bradi5g12640.1	-0.72	-0.61	0.09	-0.01	0.22	0.25	-0.12	0.26	0.14	0.14
Bradi5g15220.1	-2.67	-2.7	0.22	0.26	0.88	0.56	-0.47	-0.04	0.06	0.34
Bradi5g15677.3	-1.02	-0.62	0.84	-0.79	0.33	0.84	0.07	-0.02	-0.32	-0.72
Bradi5g16740.2	-2.8	-3.18	0.66	0.06	0.49	0.7	-0.02	0.46	-0.01	-0.44
Bradi5g17580.1	-2.07	-2.16	0.4	-0.51	0.84	0.91	-0.04	0.06	0.09	-0.38
Bradi5g20547.1	-	-	-2.74	-0.79	1.32	1.56	-2.54	-1.06	-0.0	1.12
Bradi5g21687.2	-1.31	-1.33	0.33	0.08	0.03	0.46	-0.15	0.39	0.05	0.3
Bradi5g22890.1	-2.21	-1.95	0.3	-0.17	0.08	1.21	-0.12	0.09	-0.15	0.2
Bradi5g22940.1	-	-	0.42	0.02	0.64	1.12	0.01	-0.01	0.26	-0.45
Bradi5g23460.3	-10.5	-11.67	0.46	0.14	0.45	-0.36	-0.38	0.28	0.2	1.17
Bradi5g24690.2	-2.0	-2.16	0.45	-0.17	0.63	-0.1	-0.09	0.3	0.32	0.46
Bradi5g25970.1	-0.94	-1.07	0.01	0.17	0.52	0.43	-0.02	0.07	-0.07	0.13

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.