Heatmap: Cluster_308 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g08989.1	-	-	0.7	-1.41	-0.29	-0.68	0.66	1.2	1.18	-1.25
Bradi1g14927.1	-	0.65	1.54	-0.26	-	-	-	1.89	-0.87	-1.19
Bradi1g45380.1	-2.05	-2.13	0.35	0.01	0.35	0.45	0.55	0.2	0.14	-0.17
Bradi1g53140.1	-0.21	0.1	0.12	-0.04	-0.09	-0.25	0.08	0.15	0.2	-0.14
Bradi1g54227.2	-1.34	-0.81	0.59	-0.72	0.11	-0.11	0.12	0.43	0.32	0.31
Bradi1g57520.3	-0.52	-0.82	0.35	-0.69	0.07	0.09	-0.06	0.6	0.23	0.11
Bradi1g59223.1	-0.09	-0.84	1.27	0.72	-1.13	0.05	-	1.4	-	-1.68
Bradi1g71390.3	-1.72	-0.96	0.61	-0.14	-0.2	0.42	-0.01	0.29	0.4	-0.01
Bradi2g00870.5	-1.32	-1.26	0.36	-0.3	0.28	0.01	0.44	0.41	0.21	0.03
Bradi2g02190.1	-4.99	-4.35	0.74	-0.83	-0.24	0.35	0.54	1.05	0.45	-0.57
Bradi2g02640.1	-0.09	0.09	0.62	-0.25	-0.26	-0.02	-0.32	0.3	-0.2	-0.14
Bradi2g04193.1	-	-	0.8	-2.93	-1.54	0.8	0.31	1.19	0.01	0.6
Bradi2g19820.1	-1.11	-1.04	0.3	0.2	-0.16	-0.09	0.09	0.34	0.46	0.16
Bradi2g31690.2	-1.04	-0.99	0.39	-1.25	0.37	-0.55	0.86	0.34	0.82	-1.16
Bradi2g34430.1	-1.62	-1.33	0.44	-0.1	0.11	-0.16	0.0	0.43	0.51	0.31
Bradi2g36441.2	-5.12	-6.29	0.16	-0.76	0.16	0.09	0.65	1.12	0.83	-0.9
Bradi2g45710.1	-1.42	-1.41	0.31	-1.15	-0.93	0.05	0.28	0.97	0.74	0.22
Bradi2g62315.1	-9.78	-11.27	1.16	-0.46	-0.08	-0.19	-0.37	0.23	0.67	0.75
Bradi3g01540.1	-0.42	-0.44	0.24	-0.15	0.03	0.03	0.04	0.38	0.15	-0.08
Bradi3g12810.1	-1.22	-1.07	0.27	-0.07	0.09	0.24	0.34	0.31	0.29	-0.05
Bradi3g26870.1	-3.13	-3.44	0.94	-1.45	0.05	0.54	0.26	0.9	0.22	-0.34
Bradi3g28290.1	-2.51	-2.68	0.76	0.0	-0.07	-0.7	0.18	0.47	0.53	0.53
Bradi3g30187.1	-1.32	-1.21	0.5	0.27	0.11	-0.06	-0.04	0.25	0.33	0.12
Bradi3g32080.1	-1.02	-0.99	0.51	0.09	-0.01	0.19	0.18	0.14	0.17	0.04
Bradi3g41200.2	-3.87	-4.42	0.88	-0.47	-0.09	0.15	0.15	1.1	0.43	-0.58
Bradi3g44460.1	-1.35	-1.13	0.73	-0.67	0.18	-0.13	0.53	0.66	0.45	-1.21
Bradi3g51880.1	-	-	0.68	-2.5	0.47	-0.19	0.6	0.97	0.9	-0.74
Bradi3g55366.1	-3.35	-2.34	0.9	-0.03	-0.0	0.07	-0.29	0.76	0.1	0.29
Bradi3g55911.1	-1.66	-1.58	0.58	-1.87	-0.27	0.15	0.91	1.06	0.17	-0.87
Bradi4g12639.1	-0.65	-0.6	0.4	-0.45	-0.19	-0.15	0.43	0.18	0.52	-0.07
Bradi4g16970.1	-1.27	-1.4	0.67	-0.72	0.19	-0.16	0.23	0.7	0.63	-0.69
Bradi4g22602.1	-	-1.64	1.04	0.21	-0.97	-1.37	-	1.61	0.85	-0.49
Bradi4g24110.1	-1.08	-1.31	0.55	-1.15	0.4	-0.01	0.43	0.41	0.29	-0.01
Bradi4g30160.1	-0.91	-0.63	0.42	0.22	0.02	-0.17	-0.06	0.28	0.19	0.14
Bradi4g30637.1	-7.36	-6.83	0.88	-1.44	-0.12	0.04	0.67	0.38	1.21	-0.68
Bradi4g39340.1	-1.41	-0.95	0.27	-1.02	0.05	-0.09	0.28	0.58	0.49	0.41
Bradi4g42290.1	-5.76	-6.26	0.64	-1.59	-0.07	-0.4	0.2	0.54	1.33	0.31
Bradi5g01097.1	-	-	0.98	-1.67	-0.91	-0.37	0.29	1.16	0.91	0.1
Bradi5g03571.2	-	-	1.19	-3.28	-0.31	0.23	-1.57	1.42	0.47	0.31
Bradi5g06277.1	-2.67	-3.71	0.54	-0.43	0.2	-0.11	0.62	0.87	0.62	-0.78
Bradi5g07720.1	-	-	0.8	-2.5	0.47	0.21	0.89	0.71	0.42	-0.48
Bradi5g19980.2	-3.08	-3.66	0.74	0.23	0.31	-0.01	0.01	0.5	0.5	-0.14
Bradi5g24800.1	-1.7	-1.18	0.52	-0.23	-1.56	-0.4	0.43	0.93	1.01	-0.72
Bradi5g25422.1	-	-	-	-	-	0.46	-	2.28	0.53	1.23

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.