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Heatmap: Cluster_134 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
4711.36 4455.5 753.23 645.0 1526.03 1168.24 2454.26 2078.89 2226.2 1703.15
1346.48 1419.56 433.18 724.46 713.31 605.54 1085.46 877.12 827.98 715.97
816.79 816.27 107.29 175.12 204.92 145.24 404.46 308.43 284.95 245.83
538.23 622.79 41.96 103.56 61.48 51.98 241.05 156.53 123.11 117.59
477.26 464.21 130.06 159.09 156.82 184.63 284.26 218.31 181.64 165.09
15.77 24.56 0.71 3.39 0.67 0.43 2.36 4.06 2.58 3.71
17.56 17.81 0.67 5.01 2.71 2.36 12.44 7.47 5.25 5.14
153.15 182.57 7.66 42.74 12.71 11.76 60.76 43.01 37.33 19.09
180.92 178.53 45.24 79.46 46.69 49.25 120.14 95.7 89.38 69.18
50.94 53.74 5.92 11.64 3.76 1.77 34.69 22.75 26.2 14.86
84.04 78.95 16.32 24.14 21.2 17.7 48.19 44.61 33.0 38.2
796.23 797.17 165.42 301.04 236.72 165.44 582.17 443.37 437.07 362.82
1630.24 1676.61 297.96 531.12 361.12 259.7 833.17 564.8 547.13 427.93
528.47 504.56 125.53 232.48 169.2 135.43 388.87 295.03 254.81 250.94
1105.55 1233.0 20.06 92.27 88.87 47.49 387.47 214.48 211.77 162.56
686.21 639.84 174.65 286.72 230.04 163.31 474.23 355.05 340.03 274.93
42.12 38.82 0.78 2.54 2.53 1.62 10.58 5.67 4.88 3.15
22.85 28.67 1.54 2.61 0.2 0.19 7.86 7.73 4.09 4.01
15.95 18.93 0.85 3.01 0.54 0.92 4.87 3.39 3.91 3.18
22.51 23.56 0.52 7.74 0.96 0.59 3.68 3.11 2.62 2.17
1573.73 1531.04 357.72 612.98 578.3 447.26 1090.38 737.57 725.97 606.24
9.55 11.36 1.96 5.44 2.38 1.86 3.27 2.56 2.71 2.88
71.59 87.76 38.72 37.84 30.8 32.74 47.13 36.24 33.61 30.55
35.91 32.08 1.33 9.65 2.22 1.71 9.82 11.44 7.94 4.88
24.57 23.66 0.73 3.08 1.35 2.02 15.21 4.23 3.57 2.55
11.55 19.3 1.9 4.48 2.19 2.84 6.47 5.79 3.95 3.47
149.4 140.69 12.74 30.78 24.49 16.03 95.25 60.26 70.81 27.87
4.97 6.29 1.14 1.93 0.23 0.15 0.87 2.17 1.13 0.42
16.19 16.66 0.56 1.22 0.19 0.27 5.35 3.93 3.54 1.52
134.66 128.98 10.43 16.28 7.25 5.89 55.29 49.73 32.66 46.03
54.45 50.11 15.51 22.64 24.72 22.15 32.7 23.43 23.51 21.59
6.7 5.88 1.47 1.47 1.49 0.97 2.15 1.5 1.74 1.77
205.81 202.76 29.3 50.09 52.38 45.47 147.16 91.27 105.38 75.77
1215.33 1164.71 355.56 473.76 498.56 342.61 892.64 670.96 618.34 541.73
26.22 27.62 2.99 13.56 3.65 3.25 8.38 7.47 7.16 7.2
818.29 770.89 110.38 185.57 289.12 227.1 488.54 389.88 357.18 294.43
565.25 558.22 129.11 202.67 129.35 91.98 236.85 227.79 213.87 193.43
97.96 93.8 9.79 12.82 12.7 7.47 48.13 38.81 32.27 29.5
116.25 116.82 23.81 36.35 32.4 24.28 49.68 39.53 40.8 34.88
203.54 207.47 20.9 37.08 35.98 25.2 85.6 66.01 58.26 53.4
2071.13 2118.51 914.56 1035.02 919.65 662.87 1751.86 1321.84 1373.68 1104.39
2.36 2.86 0.0 0.27 0.0 0.07 1.43 0.85 0.66 0.21
25.16 26.44 3.13 8.45 0.85 0.6 8.53 5.35 6.48 4.37
146.62 145.4 27.18 52.87 46.17 30.26 65.09 53.47 59.11 50.95
7.68 9.01 0.25 0.83 0.84 0.64 5.19 2.67 2.44 1.33
985.25 905.56 71.64 225.91 83.52 90.8 489.34 405.56 282.62 290.94
142.44 137.03 6.69 46.53 19.36 21.3 78.75 58.32 53.18 37.3
58.48 52.55 2.74 5.08 3.6 3.78 31.34 14.47 15.12 7.76
114.42 153.09 6.2 34.98 33.87 25.93 68.77 47.26 41.31 27.8
84.11 113.59 2.67 3.59 1.23 1.04 15.49 9.99 10.28 4.68
104.17 118.72 5.07 8.02 2.74 3.08 58.27 33.25 29.21 12.72
466.07 464.68 86.43 141.85 84.24 92.49 310.51 192.14 178.96 173.21
1.72 1.5 0.21 0.12 0.1 0.04 0.67 0.16 0.19 0.11
80.11 77.2 4.87 28.3 2.74 1.91 20.27 17.16 18.32 23.22
134.25 135.44 48.56 53.24 51.73 45.43 80.27 68.62 68.29 55.85
76.77 71.8 11.46 11.51 10.61 8.69 17.94 17.98 18.31 12.96
9.67 8.13 1.5 2.95 2.29 1.35 4.57 4.25 4.24 3.14
20.84 20.41 1.24 2.54 0.68 0.6 9.73 6.55 6.1 5.41
721.78 721.62 75.49 143.76 176.04 121.1 375.93 283.57 274.55 223.93
49.99 64.01 1.79 9.13 1.9 1.57 11.94 7.84 6.88 3.39
26.82 26.18 4.2 4.78 3.03 3.13 8.57 10.4 5.25 5.62
1165.21 1235.65 308.62 435.33 449.7 363.91 712.71 489.91 481.4 424.12
65.22 59.37 12.72 29.36 21.94 13.91 38.59 31.57 32.09 29.52
32.01 29.8 10.28 15.46 7.58 5.16 13.02 11.2 11.05 10.79
313.8 333.17 22.67 87.61 51.04 29.92 119.6 93.04 89.31 86.66
27.46 24.64 7.51 7.24 10.6 8.46 15.74 14.45 13.08 12.38
22.8 28.26 3.19 4.73 4.67 5.54 13.41 9.53 8.36 6.72
2.84 4.71 0.12 0.36 0.0 0.03 0.61 0.51 0.45 0.47
20.56 18.93 4.79 5.4 5.73 5.12 6.08 4.9 6.08 5.09
17.82 15.02 1.17 5.92 2.12 1.39 8.21 5.68 5.91 4.51
11.62 11.28 1.48 2.52 1.64 1.69 3.7 3.52 2.8 1.6
5.57 6.69 0.81 1.53 1.68 1.32 4.34 1.97 1.45 0.61
1848.92 1938.04 341.44 568.41 583.24 379.14 1202.59 851.3 838.97 657.07
184.1 170.6 9.26 45.16 18.61 24.21 91.23 80.79 60.02 63.39
201.45 200.24 80.11 111.55 105.33 95.67 150.24 124.46 114.62 111.2
16.49 18.07 2.03 6.12 0.92 0.6 6.05 3.21 4.07 3.71
25.26 26.46 1.6 5.24 1.56 1.46 6.91 7.49 8.74 5.71
68.01 64.86 18.11 35.48 22.78 18.41 45.97 37.6 34.91 34.22
121.73 145.15 6.65 24.78 28.34 17.1 87.59 51.62 56.2 24.28
13.46 15.72 0.28 2.15 0.17 0.2 1.97 2.67 1.62 2.82
41.07 46.95 2.7 10.59 1.46 1.12 13.04 9.35 9.18 6.92
324.57 283.88 42.89 89.96 81.33 100.46 216.03 145.44 122.78 98.08
9.38 12.52 0.17 0.92 0.07 0.14 1.7 1.17 1.22 2.02
19.19 18.84 2.04 5.14 0.28 0.33 6.79 5.0 4.15 4.36
32.58 35.35 2.9 13.71 1.01 0.74 5.36 7.33 4.55 4.39
11.04 12.17 0.75 3.02 1.78 1.67 4.91 2.04 2.35 0.59
14.24 22.15 1.11 0.18 0.21 0.28 7.16 4.3 3.22 1.16
0.85 1.0 0.03 0.08 0.04 0.0 0.13 0.07 0.13 0.23
23.19 33.7 1.4 2.02 2.99 3.63 10.03 7.17 6.23 2.1
11.71 12.95 1.37 1.97 2.44 2.15 4.27 3.97 1.83 1.87
9.33 12.4 0.45 0.3 0.05 0.1 1.93 0.93 0.95 1.27
1331.11 1375.23 406.82 560.52 603.01 363.14 1058.03 772.25 742.59 644.27
5.84 6.71 1.0 0.97 0.64 1.01 2.52 1.1 1.25 1.12
20.21 20.71 9.4 10.67 9.87 9.93 13.79 12.46 12.14 9.12
1294.52 1379.32 369.93 536.33 537.56 389.8 1093.77 779.18 717.3 612.18
805.88 808.04 196.81 305.37 205.09 151.28 613.36 435.98 419.44 358.09
50.01 53.31 8.42 17.99 14.55 14.4 24.96 17.66 18.62 17.93
5.78 6.75 2.21 3.14 2.32 1.76 3.97 2.88 3.14 2.0
17.88 17.18 0.79 2.37 0.21 0.37 3.15 3.35 2.47 2.3
60.47 67.06 7.89 20.09 17.09 12.77 20.93 16.74 17.61 19.41
34.47 32.13 11.75 13.38 13.45 12.53 21.49 16.49 20.05 17.4
5.4 6.49 0.29 0.57 0.16 0.07 1.11 0.52 0.86 0.5
772.11 757.41 192.12 306.09 291.96 239.93 530.46 356.41 412.25 322.11
68.74 72.54 26.16 39.42 29.46 21.68 44.89 31.81 36.82 29.99
3.6 3.88 0.44 2.22 0.26 0.19 1.0 0.88 0.63 0.8
1386.97 1444.32 364.72 578.54 448.03 342.21 1088.0 787.41 769.17 679.22
49.68 57.91 4.24 16.45 2.85 1.81 17.83 11.63 12.81 10.84
23.57 24.8 6.16 8.74 6.02 7.62 17.74 11.28 10.87 10.03
49.55 50.16 10.13 23.75 19.79 14.26 27.87 20.24 22.8 16.81
166.22 174.91 22.95 44.7 62.44 38.1 92.12 63.66 61.29 47.42
376.23 362.1 72.79 139.34 129.02 92.93 284.58 167.19 171.11 116.51
184.45 201.53 9.18 56.73 34.13 16.98 63.73 57.49 53.91 31.65
53.07 57.5 14.79 28.25 16.25 12.5 21.68 24.04 19.83 16.3
1152.73 1191.37 194.69 310.81 383.16 285.21 649.09 412.04 406.41 346.39
2.23 1.74 0.73 1.25 0.54 0.43 0.8 1.0 0.79 0.88
125.54 158.84 19.77 34.22 14.98 14.01 53.59 38.97 35.54 29.45
107.18 141.9 1.37 19.59 2.33 2.0 18.92 20.68 21.66 15.14
76.46 76.55 9.94 15.14 16.93 13.61 35.39 25.49 32.0 16.68
35.38 35.06 1.09 3.29 0.98 1.02 7.24 7.92 8.03 4.32
65.41 67.64 17.93 27.75 22.33 14.13 48.33 37.14 34.49 30.03
51.45 62.58 8.21 10.5 12.86 11.29 33.1 22.31 18.7 10.47
4.52 5.24 0.19 0.74 0.15 0.09 0.66 0.39 0.5 0.2
160.09 140.16 23.59 39.6 45.04 32.3 79.07 61.16 62.51 44.08
137.49 143.1 11.92 26.05 30.29 22.37 40.62 30.43 34.24 28.59
23.21 24.72 1.64 6.28 0.44 0.46 4.72 6.32 4.98 4.69
6.22 8.5 3.23 2.68 1.15 1.51 3.04 3.63 1.81 1.18
9.88 11.94 2.23 3.64 2.0 2.18 9.21 5.69 4.47 3.37
1.55 2.05 0.0 0.2 0.03 0.12 0.23 0.03 0.06 0.07
20.28 24.31 1.21 3.14 0.95 1.69 6.43 5.59 4.57 4.53
75.71 77.03 31.16 50.12 30.25 28.8 49.9 37.7 39.82 35.1
1026.11 1025.2 310.64 472.77 425.94 354.67 713.13 521.82 578.76 434.36
26.85 30.92 4.26 4.09 4.91 3.95 20.96 13.69 13.76 7.69
1126.26 1142.04 264.82 430.33 312.56 250.54 637.01 485.81 404.71 398.01
10.41 11.28 1.08 3.57 0.25 0.37 2.29 3.2 1.12 1.06
8.59 9.32 0.69 2.88 0.29 0.18 1.78 2.21 1.39 1.16
3.86 4.86 0.17 0.37 0.17 0.16 1.79 0.78 0.84 0.72
46.19 46.57 11.6 17.19 13.39 11.17 22.43 15.03 14.39 13.6
7.54 7.71 0.03 0.0 0.03 0.03 1.9 0.58 1.53 0.38
51.58 55.3 4.4 16.5 3.52 2.46 14.37 13.07 13.23 11.02
96.47 65.5 4.77 30.25 1.83 1.78 20.08 22.3 18.99 12.97
84.9 83.81 7.19 14.75 13.14 7.45 34.82 18.68 24.92 19.0
13.85 14.41 0.87 4.38 0.7 0.57 4.39 3.15 2.58 2.22
40.1 42.43 12.78 10.09 7.54 8.67 16.4 14.15 11.62 14.46
22.15 23.27 2.67 12.24 0.45 0.66 7.72 4.56 5.42 4.01
17.64 19.77 1.57 4.35 0.35 0.31 6.62 4.13 3.91 3.58
315.43 351.19 13.91 111.84 34.36 34.87 98.84 73.42 75.15 62.09
739.22 778.74 25.47 138.31 75.61 91.34 134.36 115.42 111.0 67.4
585.71 525.09 48.15 141.27 69.26 61.87 284.12 219.93 164.95 148.68
233.61 224.1 44.77 76.39 59.3 72.02 126.38 104.2 87.09 73.89
4.84 4.95 0.53 1.6 0.79 0.77 2.79 3.37 2.17 1.6
649.66 641.47 181.06 278.73 222.18 163.86 512.3 377.49 357.11 311.47
3.8 3.94 0.23 0.52 0.35 0.31 1.77 0.52 0.61 0.08
21.94 27.21 1.03 7.93 2.41 2.89 7.4 3.44 2.93 1.64
57.58 66.94 0.0 1.37 4.8 1.6 21.83 8.21 12.84 4.95
35.96 33.54 9.46 20.19 12.23 10.73 26.03 15.65 16.23 13.43
14.09 19.16 1.22 3.87 2.84 3.09 6.91 1.87 2.07 1.89
1642.25 1691.48 302.98 598.64 534.51 362.23 1073.03 747.75 730.84 524.55
31.42 32.9 2.25 9.32 4.35 4.29 11.01 8.29 6.33 6.15
18.57 16.86 1.32 7.6 2.85 1.99 6.09 6.16 3.88 2.8
27.74 29.4 3.61 14.98 3.55 2.73 10.53 9.0 8.73 8.73
11.03 9.41 0.5 1.81 1.06 1.16 4.9 4.15 3.22 4.25
8.49 8.73 0.75 2.42 1.15 1.1 5.33 4.46 2.3 2.18
25.81 28.47 1.51 3.72 0.81 0.67 4.46 4.84 4.06 2.24
23.05 27.23 1.49 5.14 1.51 0.91 7.46 4.46 4.92 2.83
1009.73 1002.64 301.4 558.01 435.23 300.26 851.45 588.04 590.38 487.35
13.38 16.72 1.37 1.83 0.33 0.4 4.17 2.85 2.81 1.78
8.07 9.67 0.41 3.47 0.41 0.43 3.21 1.67 1.62 0.62
7.0 7.48 0.37 3.22 0.13 0.13 1.51 1.77 1.08 1.15
410.26 385.5 82.74 100.85 138.37 97.06 231.34 173.9 162.92 140.11
49.83 53.5 3.68 11.91 1.63 1.54 15.37 9.31 7.97 6.53
173.38 186.34 18.72 40.59 32.19 20.37 89.46 59.97 63.79 38.63
12.2 10.75 0.61 0.64 0.96 1.4 4.29 3.29 1.73 1.01
264.79 248.05 54.09 79.33 75.53 72.64 159.51 113.1 119.51 89.94
19.47 20.82 4.93 6.51 7.57 7.06 11.67 11.86 9.68 7.58
10.8 12.24 1.65 4.6 0.85 0.86 3.3 3.97 3.68 3.68
90.81 107.98 15.31 23.42 17.23 16.38 44.41 21.16 22.34 22.82
16.19 16.89 0.96 4.09 1.22 1.69 6.01 3.89 3.63 2.04
141.47 149.03 12.11 31.77 17.96 7.94 52.5 32.9 43.42 26.93
15.73 18.17 1.14 5.54 2.45 2.01 5.16 4.47 2.62 3.26
52.49 52.14 3.62 19.28 11.49 7.84 22.88 23.57 19.05 18.13
78.86 80.02 12.66 45.7 14.48 12.21 33.35 29.53 23.41 22.75
85.45 114.19 3.76 6.04 1.91 1.04 28.32 18.22 15.63 12.3
607.82 595.43 51.93 151.17 69.62 57.14 312.51 217.66 166.37 183.04
12.63 12.84 0.95 0.31 0.37 0.92 7.52 2.41 1.73 1.96
48.81 44.54 21.45 23.96 19.84 20.9 24.79 29.25 26.49 24.03
10.39 11.32 1.99 3.68 2.12 1.43 3.35 3.12 3.01 2.56
109.36 104.8 48.85 66.96 74.96 61.87 94.94 75.31 72.35 67.77

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)