Heatmap: Cluster_194 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g04220.5	-0.63	-0.69	-0.12	0.1	-0.21	-0.14	0.28	0.37	0.31	0.29
Bradi1g05310.3	-3.52	-2.6	0.0	-0.76	-1.5	-2.15	0.28	1.02	1.21	1.01
Bradi1g08120.1	-0.75	-0.92	-1.49	0.67	-0.41	-0.62	0.28	0.4	0.51	0.65
Bradi1g17490.1	-0.85	-0.91	-0.85	0.69	-0.9	-0.81	0.47	0.42	0.55	0.53
Bradi1g20640.3	-0.59	-0.68	-1.12	0.35	-0.32	-0.51	0.65	0.21	0.5	0.41
Bradi1g29655.1	-	-	-0.7	0.69	-6.05	-5.86	1.49	0.76	1.0	0.29
Bradi1g31530.1	-8.73	-9.9	-0.76	0.87	-1.82	-1.96	1.2	0.73	0.92	0.23
Bradi1g45747.1	-0.15	-0.18	0.05	0.14	-0.31	-0.41	0.29	0.14	0.19	0.08
Bradi1g47860.1	-0.37	-0.41	0.13	0.14	-0.24	-0.51	0.31	0.22	0.25	0.19
Bradi1g49300.5	-0.65	-0.48	-0.21	0.49	-1.02	-1.41	0.5	0.39	0.48	0.48
Bradi1g65010.1	-0.89	-0.61	-0.23	-0.29	-0.82	-1.32	0.33	0.79	0.65	0.7
Bradi1g75450.1	-0.95	-0.78	-0.76	0.24	-1.48	-1.86	0.61	0.94	0.45	0.76
Bradi2g01115.1	-	-	-0.83	1.03	-2.8	-4.23	1.01	0.91	0.74	0.7
Bradi2g01580.1	-3.79	-3.8	0.19	-0.13	-1.83	-0.45	0.69	1.05	0.64	0.63
Bradi2g14560.5	-	-	0.08	-0.25	-2.08	-2.53	0.84	1.38	0.76	0.67
Bradi2g15300.3	-0.95	-1.24	-0.01	0.3	-0.52	-0.8	0.41	0.45	0.5	0.54
Bradi2g15317.3	-0.94	-1.02	-0.71	0.61	-0.96	-1.1	0.49	0.58	0.6	0.54
Bradi2g15490.12	-2.88	-3.75	0.91	0.14	-0.48	-1.84	0.69	0.58	0.73	0.05
Bradi2g23350.1	-0.43	-0.58	-1.73	-2.14	-5.69	-5.66	0.59	1.04	0.78	1.45
Bradi2g24737.4	-4.34	-5.59	0.43	-0.55	-0.74	-1.97	0.57	0.81	1.14	0.68
Bradi2g27870.4	-1.48	-1.54	-1.31	0.77	-0.84	-1.28	0.55	0.54	0.59	0.84
Bradi2g28380.5	-2.98	-3.04	0.09	0.0	-1.14	-0.68	0.4	0.92	0.8	0.73
Bradi2g28400.1	-1.37	-1.62	-0.12	0.35	-0.67	-0.76	0.58	0.68	0.42	0.52
Bradi2g34986.3	-1.1	-0.96	-0.52	0.49	-2.0	-1.7	0.87	0.56	0.83	0.34
Bradi2g36451.1	-0.37	0.39	0.01	-0.16	-	-2.04	0.24	0.51	0.33	0.93
Bradi2g37340.8	-2.72	-2.63	-1.28	0.29	-2.19	-2.88	0.97	0.78	1.02	0.98
Bradi2g45840.2	-1.59	-1.51	-0.02	0.25	-0.57	-0.75	0.75	0.42	0.56	0.47
Bradi2g51900.3	-0.48	-0.48	0.0	0.4	-0.52	-0.83	0.47	0.19	0.4	0.19
Bradi2g51947.1	-3.9	-4.17	-0.69	0.9	-2.53	-2.76	1.21	0.85	0.83	0.23
Bradi2g52940.1	-0.77	-0.75	-0.21	0.05	-0.27	-0.43	0.35	0.48	0.31	0.53
Bradi2g54380.1	-0.36	-0.54	-0.19	0.16	-0.3	-0.63	0.41	0.35	0.22	0.39
Bradi2g61990.8	-4.76	-4.79	0.98	-0.36	-1.15	-1.47	0.24	0.93	1.16	0.06
Bradi3g04860.1	-1.11	-1.57	0.0	0.44	-0.1	-0.38	-0.03	0.29	0.55	0.57
Bradi3g11270.3	-	-6.48	1.13	-1.18	-1.89	-2.94	0.68	1.07	1.29	-0.27
Bradi3g14800.1	-1.64	-1.79	-0.0	1.03	-0.72	-0.76	0.13	0.01	0.21	0.93
Bradi3g16070.1	-2.97	-4.2	-0.29	0.62	-0.53	-1.3	0.34	0.85	0.68	0.77
Bradi3g16270.1	-2.16	-1.55	0.15	0.51	-0.88	-0.47	0.38	0.61	0.41	0.56
Bradi3g17165.1	-1.16	-1.65	-2.23	-0.72	-0.95	-2.43	0.59	0.58	1.42	1.03
Bradi3g18680.6	-1.6	-2.14	0.32	0.53	-0.21	-1.22	0.84	0.56	0.48	-0.33
Bradi3g19410.3	-1.33	-1.21	-0.11	0.26	-1.42	-1.57	0.7	0.55	0.86	0.53
Bradi3g25580.4	-	-	-0.38	-0.06	-1.6	-2.21	0.89	1.11	0.86	0.93
Bradi3g31947.2	-0.38	-0.23	-0.26	0.28	-0.37	-0.6	0.32	0.37	0.25	0.22
Bradi3g39040.1	-1.37	-1.72	-0.34	-0.56	-0.78	-1.3	0.21	0.62	1.05	1.07
Bradi3g39880.2	-0.88	-0.95	-0.88	0.31	-0.52	-1.08	0.24	0.37	0.71	0.91
Bradi3g44620.2	-2.36	-2.42	-0.18	0.22	-0.62	-0.94	0.63	0.82	0.78	0.46
Bradi3g44750.1	-2.93	-3.22	-0.45	0.32	-1.44	-1.21	0.38	0.84	0.71	1.17
Bradi3g49310.6	-3.37	-4.09	-0.71	0.5	-0.16	-0.54	0.03	0.83	0.52	1.0
Bradi3g50377.1	-1.41	-1.29	-0.85	0.07	-0.63	-1.44	0.87	0.85	0.54	0.6
Bradi3g52930.3	-0.72	-0.76	0.18	0.0	-0.02	-0.42	0.05	0.4	0.31	0.42
Bradi3g54930.1	-3.34	-3.51	-1.77	-2.09	-1.33	-2.29	1.12	0.96	1.17	1.21
Bradi3g56340.2	-2.54	-1.79	-0.96	0.64	-1.88	-2.26	1.09	0.76	0.82	0.48
Bradi4g10250.1	-4.74	-2.32	-1.08	0.34	-1.31	-1.52	0.78	0.85	0.79	1.01
Bradi4g10650.2	-	-	-1.03	0.84	-2.88	-2.53	1.15	0.86	1.19	0.12
Bradi4g14237.1	-1.88	-1.61	-0.65	0.63	-1.09	-0.98	1.0	0.75	0.54	0.12
Bradi4g16440.1	-3.06	-2.41	-1.38	0.14	-1.66	-1.84	1.39	0.82	1.13	0.07
Bradi4g27760.4	-9.71	-7.55	-1.87	-0.09	-0.86	-1.14	0.46	1.04	0.8	1.38
Bradi4g34948.1	-1.85	-2.24	-0.57	-0.1	-1.73	-1.33	0.4	1.34	0.58	0.9
Bradi4g40810.1	-1.01	-0.78	-0.42	0.67	-1.57	-1.22	0.76	0.56	0.4	0.4
Bradi4g41007.1	-3.69	-4.18	-0.18	0.82	-1.61	-0.74	0.51	0.81	0.65	0.64
Bradi5g21650.1	-0.87	-0.86	-1.24	-0.3	-0.42	-1.06	0.63	0.73	0.66	0.73
Bradi5g22600.5	-4.94	-	-0.76	-0.24	-1.42	-1.65	0.56	1.28	0.99	0.96
Bradi5g23280.1	-3.51	-2.88	-0.6	0.35	-2.15	-1.94	0.87	0.84	0.8	1.0
Bradi5g23600.2	-0.95	-0.86	-0.3	0.93	-2.26	-2.7	0.77	0.57	0.49	0.34
Bradi5g26270.2	-4.7	-3.99	0.47	0.57	-1.44	-0.95	0.8	0.74	0.6	0.28

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.