Heatmap: Cluster_101 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
1.78 1.76 -1.8 0.62 -2.23 -2.86 -2.13 -1.48 -2.11 -2.55
1.68 1.61 -2.25 0.32 -0.58 -1.91 -1.53 -1.68 -1.59 -1.45
1.47 2.0 - 0.16 -0.69 -2.09 -0.88 -1.74 - -1.24
1.53 2.37 - 0.9 -3.74 - - - - -
1.84 2.68 - - - - - - - -
1.83 2.16 -5.13 0.14 - -3.94 - -5.13 -5.31 -0.47
1.9 2.16 - 0.83 - - - - - -
1.57 2.82 - - - - - - - -
1.79 1.97 -2.13 0.25 -1.14 -2.01 -2.44 -3.07 -2.61 -4.19
1.6 2.25 -5.11 -0.39 -1.7 -2.49 -2.78 -1.65 -2.43 -1.79
1.97 2.56 - - - - - - -2.5 -
2.23 1.79 -2.24 0.5 -2.18 - - - - -
1.84 1.81 -1.51 0.73 -3.74 -4.52 -2.59 -2.58 -2.74 -1.75
1.59 1.7 -1.6 0.41 -2.22 -2.2 -1.06 -1.2 -1.46 -1.37
1.6 1.74 -1.53 0.73 -2.22 -2.01 -3.05 -2.02 -0.71 -2.55
1.72 2.45 - 0.32 - - - - - -
1.28 1.18 -0.92 0.12 -0.54 -0.46 -0.77 -0.57 -1.1 -0.86
1.67 1.91 -1.07 0.38 -1.11 -1.24 - - -1.62 -3.96
1.84 2.12 -5.55 -0.52 -4.52 - -0.84 -4.5 -1.98 -1.11
1.88 2.19 - 0.06 - - - - - -0.48
1.57 1.5 -1.27 0.58 -0.92 -0.95 -1.66 -1.48 -2.07 -1.56
1.47 1.93 -1.14 -1.53 -6.33 - -0.19 -0.61 -1.03 -0.74
1.29 1.56 -0.93 0.03 -1.71 -0.89 -0.77 -0.9 -1.12 -0.66
1.66 2.42 -3.96 -1.24 - -4.1 -1.64 -2.49 -2.66 -1.77
1.44 2.28 - 0.13 - - - -0.39 - -0.87
1.74 2.54 - -0.58 - - - -2.77 - -
1.13 2.64 - - -0.68 -0.08 - - - -
1.74 2.73 - - - - - - - -
1.83 2.69 - - - - - - - -
1.41 2.3 -4.47 -1.98 -3.42 - -0.21 -1.79 -1.75 -0.82
1.41 2.88 - - - - - - - -
1.58 2.81 - - - - - - - -
1.8 2.34 -4.66 -0.07 -4.72 - -2.9 -2.17 -4.93 -5.26
1.95 2.12 -2.06 -0.32 -2.76 -3.14 -3.65 -4.5 -1.98 -3.03
1.53 1.5 -2.02 0.46 -1.02 -1.78 -0.99 -1.21 -0.99 -1.14
1.59 1.57 -0.77 0.59 -1.81 -2.15 -1.48 -1.75 -1.6 -1.22
1.13 2.96 - - - - - - - -
1.43 1.36 -0.86 0.67 -1.72 -1.31 -1.3 -1.04 -0.91 -1.11
1.55 1.81 -3.45 0.56 -0.97 -1.27 -2.19 -1.64 -1.64 -2.33
1.54 1.35 -1.98 0.52 -0.78 -1.04 -0.85 -1.44 -0.91 -1.56
1.89 2.32 - - - - - 0.38 - -
1.58 2.52 - -0.11 -3.23 -4.63 -2.39 - - -4.76
1.71 1.95 -1.16 0.35 -2.16 -2.54 -2.04 -2.47 -2.38 -2.8
1.49 1.92 -1.12 0.34 -2.72 -2.27 -1.65 -1.42 -2.09 -1.35
1.83 2.69 - - - - - - - -
1.44 2.86 - - - - - - - -
1.55 2.74 - - - - - - -1.3 -
1.64 2.26 -2.94 -0.03 -1.91 -1.88 - -1.65 -4.64 -3.4
1.29 2.71 - - - - - - 0.03 -
1.63 2.47 - 0.47 - - - - - -
1.86 2.08 -2.8 0.09 -1.71 -2.08 - - -2.07 -2.75
1.77 2.08 -3.9 -0.52 -5.07 -4.72 -1.06 -1.15 -1.83 -1.71
1.27 1.24 -0.64 0.13 -0.53 -0.43 -1.06 -1.15 -0.95 -0.72
1.69 2.15 -3.96 0.78 -3.32 -2.2 - -4.86 -4.46 -2.69
1.71 2.2 -4.29 0.27 -2.03 -1.91 -5.81 -3.09 -3.45 -2.96
1.5 2.84 - - - - - - - -
2.11 2.02 -2.14 -0.16 - - -2.25 -3.1 -2.69 -4.62
1.7 2.0 -4.63 0.56 -2.59 -3.16 -3.11 -2.96 -2.02 -1.11
1.5 1.57 -1.53 0.5 -1.32 -1.24 -1.73 -1.59 -1.36 -0.71
1.65 1.96 -3.67 -0.61 -3.1 -2.76 -1.26 -0.69 -0.62 -1.75

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.