Heatmap: Cluster_95 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g04790.1	-0.68	-0.82	0.28	0.29	-0.05	0.3	0.24	0.16	0.04	-0.23
Bradi1g07970.1	-	-5.44	1.29	-0.54	1.22	0.29	0.66	-0.45	-1.49	-0.71
Bradi1g10276.1	-	-	1.56	1.15	-1.63	-1.02	0.22	-0.05	0.51	-1.15
Bradi1g17520.1	-	-	0.08	-0.38	0.0	-0.15	0.92	0.97	0.46	0.07
Bradi1g17860.1	-	-	0.11	0.02	-0.16	-0.04	0.8	1.11	0.2	-0.0
Bradi1g22960.1	-	-	1.41	-0.72	0.31	0.02	1.12	0.22	-0.11	-2.23
Bradi1g23800.1	-	-	0.52	-0.6	-1.92	-0.22	0.85	1.49	0.04	0.2
Bradi1g29424.1	-0.97	-0.74	1.47	-0.81	-1.95	-0.17	0.73	0.02	0.61	-2.28
Bradi1g38238.1	-	-3.55	1.15	-	-0.07	-0.1	1.13	0.69	0.52	-0.82
Bradi1g46020.2	-	-	-0.38	0.04	0.26	-0.22	1.03	0.95	0.53	-0.47
Bradi1g50882.1	-	-	-0.24	-0.19	-1.84	-3.24	1.32	1.24	0.97	0.1
Bradi1g51740.1	-0.69	-0.65	0.13	0.09	0.1	0.03	0.44	0.18	0.12	-0.13
Bradi1g51990.1	-	-	1.55	-0.27	1.04	0.68	0.27	-0.34	-1.26	-2.51
Bradi1g52381.2	-3.91	-4.11	0.13	0.65	-0.26	0.2	1.37	0.22	0.09	-1.29
Bradi1g59520.1	-	-	1.26	-0.66	0.35	0.03	1.03	0.47	-0.04	-1.88
Bradi1g77860.1	-	-	-0.01	-	-0.3	0.45	1.23	1.18	0.52	-0.33
Bradi2g01420.1	-3.56	-3.55	0.47	-0.66	0.08	-0.45	0.81	0.88	0.37	0.18
Bradi2g01770.1	-0.57	-0.53	0.58	0.03	-0.03	-0.35	0.15	0.38	0.04	-0.13
Bradi2g03930.1	-	-	1.37	-1.24	1.55	1.19	-0.25	-0.95	-1.8	-2.81
Bradi2g10750.1	-	-7.05	0.43	-0.78	0.8	0.28	0.94	0.59	0.12	-0.74
Bradi2g19290.1	-	-	1.61	0.59	-1.95	-0.74	0.97	-0.07	0.26	-1.09
Bradi2g23570.1	-0.88	-0.8	0.58	0.18	0.93	0.07	0.03	-0.39	-0.43	-0.37
Bradi2g26365.1	-2.88	-5.04	0.23	-1.44	-0.49	-0.09	1.32	1.06	0.66	-1.08
Bradi2g27121.1	-	-	1.61	-2.03	0.9	0.64	-1.0	0.39	-0.26	-0.67
Bradi2g31080.2	-1.27	-0.93	0.08	-0.51	0.3	0.08	0.92	0.6	0.13	-0.95
Bradi2g31280.1	-	-	0.43	0.84	-0.72	-0.92	0.52	1.21	-0.68	0.44
Bradi2g35510.1	-	-	1.56	0.01	-2.7	-	0.8	0.7	-1.05	1.03
Bradi2g38670.1	-	-	1.75	-0.34	1.39	0.94	-0.8	-1.22	-2.09	-3.71
Bradi2g38700.1	-6.53	-7.25	1.14	-1.13	0.88	0.9	0.84	-0.07	-0.51	-2.46
Bradi2g39370.5	-3.71	-3.34	0.22	0.39	0.17	0.46	0.79	0.5	-0.09	-0.37
Bradi2g40840.1	-	-	0.36	-	2.38	-0.0	-	0.41	0.23	-
Bradi2g41020.1	-4.34	-4.5	-0.02	0.06	-0.18	0.86	1.37	0.4	-0.32	-1.04
Bradi2g45890.1	-0.3	-0.49	0.14	-0.3	0.21	0.19	0.32	0.15	0.1	-0.27
Bradi2g58640.1	-0.96	-0.82	0.05	0.19	0.13	0.02	0.58	0.07	0.24	-0.13
Bradi3g09625.1	-	-	-0.02	-1.36	0.35	0.38	0.94	0.59	0.62	0.12
Bradi3g10310.1	-	-	1.58	-0.27	1.3	0.93	-0.12	-1.18	-1.57	-3.14
Bradi3g10480.1	-	-	0.55	-0.78	-0.34	-0.53	0.98	1.37	0.52	-1.07
Bradi3g13080.1	-0.89	-0.96	0.41	0.08	0.09	0.22	0.36	0.32	-0.12	-0.17
Bradi3g14032.1	-	-	-0.12	-0.19	-0.82	0.46	1.54	0.42	0.09	-0.08
Bradi3g18810.1	-2.14	-2.72	0.69	0.82	0.15	-0.35	0.67	0.06	-0.45	-0.04
Bradi3g28417.1	-	-	0.75	-0.4	-0.3	-0.85	0.48	1.26	0.5	-0.02
Bradi3g31767.1	-	-	0.81	-0.38	1.17	0.95	0.18	0.23	-0.52	-1.7
Bradi3g34810.2	-	-	1.36	-3.07	-0.34	-0.35	1.09	0.93	0.55	-2.02
Bradi3g36570.2	-	-	1.1	-3.19	-	-	1.15	1.85	0.44	-0.81
Bradi3g41340.1	-2.93	-2.98	0.37	0.31	0.09	-0.05	0.86	0.57	0.12	-0.34
Bradi3g42570.2	-	-	0.22	-0.1	-0.32	0.84	1.36	0.11	0.06	-0.67
Bradi3g44482.1	-	-	0.25	-1.14	-1.38	-	1.44	1.58	1.0	-1.92
Bradi3g48930.2	-0.64	-0.57	0.34	0.22	-0.01	0.3	0.16	-0.04	0.18	-0.31
Bradi4g01420.1	-	-9.25	-0.09	-1.05	0.1	-0.3	0.94	0.95	0.54	0.49
Bradi4g01661.1	-	-	0.7	-	-0.47	-1.85	0.84	1.16	1.67	-2.54
Bradi4g11241.1	-	-	0.6	-0.28	0.16	-0.46	1.4	0.25	0.51	-0.82
Bradi4g18910.1	-0.43	-1.41	-0.12	-0.62	-0.28	0.34	0.74	0.69	0.27	-0.42
Bradi4g21255.2	-	-	1.09	1.05	-1.2	0.15	0.85	0.16	0.33	-3.52
Bradi4g24490.2	-2.17	-1.89	1.17	0.91	-0.24	-0.14	0.39	0.22	-0.34	-1.47
Bradi4g25060.7	-1.95	-1.12	0.24	0.29	-0.27	0.27	0.57	0.41	0.16	-0.14
Bradi4g28874.1	-3.17	-3.33	0.76	-1.37	-0.31	-0.23	0.77	0.91	0.32	0.28
Bradi4g37990.1	-0.44	-0.5	-0.02	-0.35	-0.09	-0.0	0.48	0.53	0.27	-0.33
Bradi4g41760.1	-0.35	-0.21	-0.23	-0.57	0.06	-0.25	0.42	0.43	0.48	-0.2
Bradi4g44970.1	-	-	0.81	-1.61	1.42	0.72	-0.25	0.73	-0.06	-2.93
Bradi5g14390.3	-	-5.92	-1.63	-0.21	-0.2	0.25	0.95	1.28	0.73	-0.5
Bradi5g14900.3	-0.62	-0.67	0.43	0.3	-0.03	-0.09	0.36	0.13	-0.0	-0.24
Bradi5g16540.2	-0.85	-1.24	0.48	0.35	0.48	-0.23	-0.4	0.13	0.46	-0.17
Bradi5g19700.1	-	-	0.45	-2.75	-4.0	-0.01	1.46	1.42	0.18	-0.22
Bradi5g19850.1	-	-	1.69	0.37	-0.91	-1.06	0.64	0.94	-0.39	-2.06
Bradi5g27110.2	-1.14	-1.19	0.7	-0.56	0.75	0.24	0.1	0.08	0.21	-0.62
Bradi5g27190.1	-	-	-0.44	-1.13	-0.39	-1.13	1.04	1.74	0.48	-0.34

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.