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Heatmap: Cluster_69 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
-0.95 -0.87 -0.13 -2.55 -0.94 -1.14 0.69 1.1 1.14 -0.13
-7.03 -7.79 0.7 -2.04 -1.43 -1.64 1.06 1.19 1.14 -0.23
-3.47 -3.87 0.61 -2.5 -1.37 -0.6 0.83 1.07 0.95 0.37
-1.94 -2.26 -0.6 -1.41 -1.69 -1.87 1.01 1.31 1.29 -0.02
-5.23 -6.62 -0.0 -1.75 -2.7 -1.52 1.17 1.24 1.26 0.21
-6.81 -5.49 0.75 -2.84 -1.63 -1.08 1.16 0.72 1.37 -0.15
-0.77 -0.88 - - - - 0.98 1.96 1.26 -0.69
- - -1.26 -2.46 -3.63 -3.02 1.03 1.87 1.28 0.07
- - -0.5 -0.68 -0.89 -0.29 0.27 1.01 1.2 0.84
- - -0.11 -0.85 -2.91 -2.88 1.19 1.32 1.41 -0.31
-4.14 -4.42 -0.75 -0.41 -1.75 -1.6 1.07 1.18 1.54 -0.6
-2.25 -1.64 -3.63 -1.66 -1.79 -3.4 0.37 1.4 1.44 1.02
- -0.94 -0.37 - - -0.7 1.58 1.32 0.55 0.2
-2.96 -2.96 -6.94 -3.24 -1.72 -0.55 1.22 1.59 1.46 -0.84
-4.22 -5.38 0.35 -0.92 -1.11 -2.49 1.04 1.15 1.14 0.01
-6.27 -8.76 -0.13 -2.46 -4.1 0.11 1.52 0.87 1.19 -0.36
- - -3.2 -2.55 -0.81 -0.58 0.94 1.77 1.1 0.03
-4.48 -4.85 -0.4 -2.48 -2.23 -0.95 1.74 0.93 1.32 -0.97
-9.23 -10.39 - - -1.77 -1.89 1.48 1.8 1.57 -2.49
-6.91 -6.59 0.66 -2.17 -2.93 -2.42 1.11 1.07 1.56 -0.59
-6.23 -5.9 0.39 -1.29 -1.84 -1.88 0.73 0.87 1.41 0.63
-1.28 -1.33 -0.52 -1.41 -0.28 0.19 0.63 0.54 0.99 0.23
- - 0.03 - -3.26 -0.32 0.87 1.31 1.87 -3.31
-2.0 -1.87 0.09 -1.81 -0.48 -0.08 0.29 0.85 1.2 0.19
-2.71 -3.6 0.36 -0.68 -0.99 -0.28 0.33 1.11 0.92 0.29
- -2.46 -0.34 0.23 -1.85 -0.53 0.64 1.12 0.89 0.38
-5.03 -7.52 -1.45 -1.58 -2.39 -3.38 1.23 1.81 1.29 -0.58
- - -1.53 - -4.03 -4.41 1.79 0.9 1.92 -1.17
- - -0.83 -3.22 0.36 0.06 1.33 0.69 1.01 -0.23
-3.43 -3.41 -0.01 -1.24 -0.97 -1.01 0.93 1.28 0.68 0.54
-4.52 -4.68 -0.46 -1.65 -1.25 -1.09 0.91 1.62 0.94 0.17
-2.03 - - - -1.52 - 1.64 2.05 1.1 -
-1.93 -1.65 -0.68 -1.67 -4.0 -2.89 1.1 1.47 0.83 0.67
-4.99 -6.16 -2.17 -0.84 -0.85 -1.62 1.31 1.48 1.41 -1.48
-4.74 -5.49 0.36 -0.99 -1.16 -0.43 0.68 0.86 1.12 0.46
-0.4 -1.34 - -1.52 - -3.82 1.83 0.9 1.39 -1.4
-4.58 -6.33 -0.14 -1.87 -2.66 -1.97 1.02 1.33 1.18 0.63
- - -1.33 -1.32 -2.05 -1.49 1.1 1.63 0.99 0.45
- - -1.09 -0.91 - - -0.23 2.08 1.54 -0.02
-1.83 -2.48 0.87 -0.31 -2.22 -2.26 0.27 0.94 1.16 0.17
- - -1.86 - -1.82 -0.62 1.39 1.22 1.5 0.02
-3.6 -1.55 -1.83 -1.68 -4.75 -5.13 1.33 1.34 1.3 0.51
- - -3.17 -1.4 -1.05 -0.62 0.86 1.37 1.49 0.24
- - -1.05 -0.5 -1.84 -2.18 1.19 1.62 0.98 -0.03
- -7.39 - - 0.34 -0.24 1.96 0.36 1.14 -1.01
- - -2.73 - -0.54 -1.12 0.97 1.37 1.46 0.48
- - 0.16 -0.26 -1.49 -1.34 1.03 1.34 0.36 0.52
- - -4.61 -3.98 -2.12 -2.49 1.49 1.25 1.98 -1.48
- - - -7.81 -10.07 - 1.41 2.02 1.46 -0.85
-4.12 -3.87 -0.02 -1.91 -0.9 -1.19 1.29 0.77 1.16 0.33
-7.37 - -0.42 -6.32 0.36 -0.65 1.58 1.13 0.99 -2.83
- - 0.67 - -2.72 -1.78 1.14 1.25 1.48 -0.73
-3.55 -3.91 -0.93 -2.08 -2.31 -1.8 1.4 0.75 1.62 0.28
-2.58 -2.58 -0.65 -2.39 -0.64 -0.7 0.87 0.89 1.32 0.48
- - 0.72 -1.45 -0.93 -1.22 0.73 0.92 0.51 1.04
- - 0.1 - -3.85 -2.24 1.12 1.65 1.53 -1.17
-2.54 -3.2 0.86 -2.08 -2.66 -2.43 0.44 1.08 1.29 0.5
- - -1.89 -3.34 -4.33 -2.03 1.4 1.71 1.36 -0.21
-10.52 - -1.01 -1.11 -3.3 -1.02 1.09 1.43 1.11 0.56
- - -0.05 -2.35 -4.43 -4.81 1.61 1.47 1.21 -0.65
- -2.1 - -0.31 -1.46 - 1.73 1.15 1.19 -0.37
-1.35 -1.1 -0.58 -1.0 -2.14 -2.04 0.81 1.57 0.64 0.29
- - -7.93 -7.72 -8.09 -5.36 1.36 1.93 1.28 0.22
-0.46 -0.23 -1.14 -2.09 -1.52 -3.14 1.48 0.73 1.17 -0.82
-1.53 -2.16 0.0 -1.11 -0.75 -0.77 1.03 0.98 0.74 0.12
-6.33 -4.68 -1.92 -1.1 -1.15 -1.1 0.96 1.39 1.16 0.59
-7.19 -5.47 -2.05 -2.57 -1.82 -0.99 1.25 1.4 1.16 0.61
-8.44 -10.61 0.57 -4.58 -1.57 -1.37 1.49 1.04 1.2 -0.79
-1.28 -1.45 1.08 -2.42 -1.32 -0.84 0.75 0.62 0.44 0.46
-1.85 - -1.41 - -0.38 -0.18 1.5 0.97 1.06 -0.29
- - 0.51 -1.4 -1.55 -1.09 1.8 0.79 0.67 -0.79
- - - - - - 1.54 1.57 2.04 -
- - -0.39 -2.81 -0.55 -0.93 0.34 1.05 1.52 0.76
-1.27 -0.93 0.24 -0.24 -0.57 -0.33 0.18 0.76 0.52 0.38
-4.06 -3.85 -1.22 -1.52 -0.69 -1.49 1.11 1.36 1.42 -0.5
-2.52 -2.77 0.33 -1.7 -1.03 -0.76 0.71 1.13 0.94 0.35
-7.31 -8.48 -0.16 0.29 -0.73 -0.88 0.34 0.82 1.23 0.43
-2.87 -3.13 -1.25 -1.71 -0.89 -1.42 1.02 1.28 1.44 -0.06
- - -0.65 -2.56 -0.75 -0.57 1.83 1.41 0.36 -1.23
-5.4 -3.98 0.71 -0.37 -3.21 -2.52 0.53 1.21 0.7 0.88
-0.79 -0.66 -0.2 -3.16 -1.96 -1.47 0.62 1.16 1.21 0.13
-5.12 -5.14 0.26 -1.59 -1.2 -1.43 1.56 1.29 0.99 -2.17
-3.16 -3.73 0.18 -1.86 -1.9 -1.04 0.63 1.15 1.27 0.56
- - -5.26 -5.47 -5.07 -3.64 1.33 2.04 1.52 -1.52
-0.48 -0.49 0.17 -0.62 -0.18 -0.28 0.38 0.28 0.54 0.17
-0.31 -0.21 -0.15 -0.09 -0.25 -0.25 0.13 0.36 0.44 0.09
-2.07 -2.43 0.2 -1.27 -1.14 -0.98 0.44 0.85 1.41 0.3
- - -0.25 -0.61 -1.37 -1.13 0.91 1.58 1.18 -0.94
-1.4 -1.55 -1.33 -1.98 -0.78 -1.42 0.62 1.15 1.41 0.36
-2.92 -3.16 -1.16 -5.37 -1.95 -1.42 1.33 1.15 1.81 -1.34
-2.82 -2.73 0.76 -1.39 -0.98 -1.32 0.63 0.73 1.29 0.09
-5.99 -3.62 0.47 -2.61 -1.86 -0.4 0.51 1.0 1.5 0.09
-4.47 -3.05 -1.91 -3.73 - -3.35 0.2 2.35 1.55 -2.16
-6.05 -5.8 -0.47 -1.7 -1.47 -2.29 1.22 1.42 1.12 0.26
-2.26 -2.7 1.28 -0.17 -2.68 -2.48 0.4 0.78 0.77 0.31
-1.02 -0.76 -0.3 -1.0 -0.65 -0.32 0.58 0.93 0.85 -0.06
-2.43 -4.18 -0.75 -2.08 -0.28 -1.32 1.21 0.99 1.15 0.25
-0.58 -0.92 -0.79 -0.46 -1.47 -1.56 0.52 1.04 0.91 0.51
- - 1.02 -2.92 -3.4 -1.27 0.94 1.18 1.28 -0.48
- - -0.16 -4.9 -1.53 -1.97 1.47 1.13 1.55 -0.78
-1.53 -1.13 -0.9 -0.14 -1.04 -0.84 0.28 1.14 1.13 0.15
-0.71 -0.85 0.38 -2.21 - -2.01 -0.56 1.53 1.33 -0.01
-4.03 -4.56 0.32 -0.59 -0.98 -0.65 0.56 1.1 1.17 -0.05
-7.28 -4.64 -1.46 -0.5 -1.16 -0.48 0.26 1.52 1.16 0.5
-10.81 -10.97 0.56 -2.23 -0.88 -1.16 0.53 1.07 1.29 0.42
-0.54 -0.37 0.0 -0.32 0.15 -0.16 0.44 0.21 0.32 -0.06
- - -1.72 -4.88 -1.53 -1.2 2.22 0.77 1.2 -2.14
-0.52 -0.39 0.25 -0.62 -0.34 -0.13 0.42 0.31 0.45 0.07
-1.82 -2.11 -0.43 -0.51 -2.81 -3.66 1.04 1.09 1.15 0.5
-5.15 -5.09 0.63 -2.39 -1.79 -1.96 0.97 1.12 1.2 0.29
- -3.28 0.39 -3.62 -3.69 -2.48 0.4 1.56 1.73 -0.56
-5.21 -7.2 0.64 -1.65 -4.89 -1.14 0.51 0.88 1.62 0.33
- - -1.62 -3.69 -3.2 -2.57 1.04 1.59 1.6 0.3
-1.52 -1.35 -4.15 -6.38 -6.2 -3.04 1.78 1.56 1.26 -1.82
-4.39 -4.97 0.15 -1.2 -1.55 -1.02 0.73 1.27 1.03 0.52
-0.75 -1.07 -0.98 -0.97 -1.07 -1.64 0.55 1.13 1.31 -0.03
- - -4.49 - - - 1.16 2.05 1.51 -0.49
-5.27 -5.57 -1.14 -1.81 -3.69 -4.44 0.93 1.44 1.56 0.61
-0.58 -0.68 -0.5 -0.28 -0.17 0.05 0.68 0.25 0.67 -0.2
- - - -3.8 0.49 -0.66 1.89 -0.37 1.67 -2.16
- - -1.52 -3.33 -1.21 -1.16 1.6 1.7 1.02 -1.46
-0.47 -0.35 -0.46 -1.31 -0.01 0.02 0.48 0.68 0.69 -0.41
-1.88 -2.14 -1.06 -2.4 -1.69 -2.32 1.49 1.17 1.24 -0.15
-3.62 -3.62 -0.36 -0.71 -1.72 -1.39 1.06 1.47 0.85 0.15
-0.44 -0.5 -0.01 -0.33 -0.17 -0.1 0.26 0.41 0.38 0.16
- - 0.32 -3.43 -3.52 - 0.97 1.24 1.68 0.09
- - 0.24 -2.01 -0.83 -1.07 0.99 1.22 1.02 0.26
-1.17 -1.03 -0.14 -0.5 -0.51 -0.3 0.63 0.86 0.4 0.33
-4.58 -4.75 -0.58 -1.15 -1.11 -1.41 -0.24 1.88 1.25 0.08
- - 0.18 -1.28 -0.91 -2.0 1.68 0.77 1.4 -3.11
-0.95 -1.25 0.2 -0.55 -0.17 -0.06 0.56 0.47 0.69 -0.12
-6.69 -5.86 -0.47 -2.82 -2.57 -2.79 0.96 1.32 1.43 0.73
- - -1.44 -2.58 -1.07 -3.08 1.16 1.77 1.06 0.18
- - 1.04 -0.3 -1.03 -3.22 0.07 1.51 0.74 -0.06
- - -1.98 -4.78 0.44 -0.49 1.86 1.33 0.46 -3.14
- - -0.8 -0.33 -0.03 -0.66 1.17 1.74 0.46 -3.9
-1.22 -1.16 -0.58 -1.24 -1.82 -2.13 0.65 1.12 1.28 0.42
-5.42 - -0.54 -1.67 -2.54 -3.76 0.51 1.74 1.73 -0.64
-7.44 -9.02 0.19 -1.2 -1.2 -1.61 0.71 1.06 1.2 0.7
-4.34 -4.37 -1.13 -3.75 -2.57 -3.28 1.29 1.57 1.31 0.28
-2.85 -5.13 -0.72 -0.76 -1.33 -0.44 0.78 1.51 0.65 0.45
- - - - - - 1.82 0.98 2.17 -
-0.99 -1.73 -0.9 -1.13 -0.75 -1.44 1.22 1.07 0.69 0.25
-4.71 -6.6 -4.4 -4.74 -0.11 -0.29 1.43 1.34 1.42 -2.3
- - -0.66 -1.02 0.08 -1.64 1.61 0.93 1.17 -1.76
-4.59 -1.95 -2.01 -2.02 -0.81 -1.06 1.21 1.32 1.43 -0.62
-2.92 -3.41 0.12 -0.92 -2.14 -2.32 1.01 1.02 1.36 0.17
-3.28 -3.12 -0.64 -2.59 -3.35 -3.31 0.93 1.31 1.44 0.74
-1.03 -1.06 0.21 -0.73 -0.68 -0.87 0.58 0.77 0.74 0.3
-1.79 -1.53 -1.25 -0.59 -1.2 -1.05 1.18 1.25 0.8 -0.03
- -6.03 0.73 -1.38 -0.38 -0.3 0.27 0.84 1.34 -0.25
-5.56 -6.73 0.42 -2.02 -1.9 -2.23 0.2 1.21 1.51 0.68
-5.36 -5.77 -1.19 -3.41 -1.83 -2.94 1.26 1.76 1.31 -0.42
- -8.74 -0.72 -3.61 -4.43 -4.23 1.18 1.79 1.29 0.06
- -4.08 - - -3.44 - 1.96 1.98 -0.35 0.3
-2.32 -2.29 0.43 -3.15 -2.06 -2.95 0.61 1.24 1.43 0.23
-3.04 -4.49 0.33 -1.6 -1.03 -0.91 0.73 0.89 1.04 0.73
-0.6 -0.62 -0.18 -0.64 -0.46 -0.42 0.56 0.57 0.83 -0.06
-1.97 -2.33 -0.26 -0.7 -0.46 -0.81 0.77 1.15 0.89 0.04
- -12.19 0.84 -1.29 -0.24 -1.22 -0.43 1.1 0.93 0.79
-6.26 -7.42 -1.6 -3.32 -3.08 -4.59 1.2 1.44 1.87 -0.47
-1.78 -1.94 -0.07 -1.58 -0.37 0.29 0.9 0.53 0.96 -0.13
- - - - - -1.83 0.35 2.03 1.64 0.31
- - - - - - 1.9 1.02 2.08 -
-1.3 -2.06 0.11 -0.57 -0.58 -0.97 0.64 1.19 0.55 0.15
- - - - -1.31 - 2.16 1.54 1.14 -
-0.93 -0.69 -0.23 -0.67 -0.56 -0.46 0.92 0.53 0.84 -0.26
-6.79 -5.95 -6.14 - -4.65 -3.64 1.47 1.32 1.98 -0.69
- - - - - -6.14 1.86 1.37 1.71 -1.0
-3.54 -3.4 0.19 -2.27 -1.95 -1.41 0.9 0.95 1.38 0.53
- - 0.56 -0.74 -0.51 -0.91 0.05 1.07 1.29 0.17
- - 0.07 -0.32 - - 1.75 1.03 1.02 -0.49
-1.54 -4.29 -1.01 -1.42 -0.81 -1.02 1.47 1.32 0.84 -0.69
-7.56 -6.92 -1.61 -1.95 -1.62 -1.63 0.9 1.32 1.7 0.2
- -3.58 -0.05 -2.71 -3.49 -2.57 -0.12 1.25 1.85 0.72
- - 0.62 -2.01 -4.17 -4.56 -2.3 1.78 1.92 -0.5
-4.63 -5.15 -0.3 -2.4 -1.85 -2.25 0.88 1.42 1.49 0.15
-3.73 -2.35 -2.04 -1.39 -3.62 -4.0 0.75 1.51 1.74 0.14
-2.12 -2.53 -0.55 -2.11 -0.51 -0.13 0.85 1.08 1.21 -0.25
-6.14 -6.31 -0.18 -0.45 -1.43 -1.1 0.76 0.9 1.47 0.26
- - -0.65 -2.37 -3.91 -3.25 0.85 1.37 1.93 -0.32
-3.81 -4.98 0.13 -3.86 -2.14 -1.94 0.83 1.69 0.9 0.46
-5.53 -7.7 -3.54 - -3.9 -4.13 1.23 1.82 1.51 0.04
-0.6 - -0.08 - - - 1.75 -0.11 2.04 -
-1.07 -1.13 -1.26 0.06 0.02 -0.73 0.76 1.06 0.64 -0.61
-2.29 -2.77 -4.92 -2.52 0.22 -1.99 1.33 1.48 1.36 -2.75
- - -0.34 0.52 -3.28 -4.66 0.32 1.85 0.71 0.2
- -2.95 0.15 0.31 -1.35 -1.14 - 2.18 1.0 -2.81
- -6.52 -2.98 -5.82 -5.91 -5.29 1.18 2.16 1.32 -0.78
-6.28 -7.13 -2.48 -2.37 -1.91 -1.72 1.17 1.78 1.36 -0.36
- - - - -0.5 -0.98 1.58 0.93 1.65 -0.4
-6.22 - -1.43 -2.34 -4.17 -3.44 0.75 1.59 1.61 0.6
- - -3.11 0.34 -2.66 -0.35 -0.04 1.42 1.75 -0.6
-3.91 -3.72 -0.36 -0.73 -2.3 -2.27 1.28 1.33 0.95 0.25
-4.44 -4.4 -0.92 -4.25 -1.67 -1.79 0.89 1.02 1.92 0.08
-1.57 -1.23 -2.08 -5.97 -2.33 -0.85 1.07 1.58 1.4 -0.98
-1.26 -2.07 1.19 -1.09 -2.08 -0.58 0.47 0.67 0.69 0.15
-2.32 -4.17 -0.87 -2.61 -1.12 -1.5 1.09 1.34 1.0 0.65
-2.27 -4.02 0.16 -2.57 - -4.37 0.66 1.45 1.43 0.46
-6.63 -7.63 0.39 -2.19 -1.52 -1.92 0.48 1.42 1.38 0.21
-4.37 -3.54 -0.95 -2.16 -3.38 -3.58 0.42 1.64 1.64 0.46
-3.28 -3.15 0.55 -1.34 -1.63 -1.62 0.8 1.1 1.13 0.27
- - 0.25 -1.24 -1.22 -0.57 1.13 1.19 0.98 -0.27
-2.4 -2.08 0.36 -1.22 -1.16 -0.73 0.72 1.17 0.78 0.26
-2.83 -3.42 -1.83 - -0.67 -0.59 1.04 1.76 1.37 -2.54
-2.86 -3.07 -0.16 -1.33 -1.5 -1.03 0.99 1.62 0.82 -0.36
-3.69 - -0.53 -0.87 -1.68 -3.64 1.82 1.9 -0.2 -2.72
-0.67 -0.5 -0.78 -0.41 -0.44 -0.39 0.44 0.79 0.69 0.18
-1.64 -1.41 -0.39 -2.34 -1.48 -1.14 1.43 1.03 1.14 -0.8
-6.4 -5.61 -0.1 -1.92 -0.7 -0.54 1.72 0.18 1.4 -1.29

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.