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Heatmap: Cluster_69 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
2.55 2.69 4.48 0.84 2.56 2.23 7.93 10.56 10.86 4.49
0.12 0.07 25.84 3.87 5.9 5.08 33.06 36.26 34.94 13.58
0.43 0.33 7.27 0.85 1.84 3.15 8.46 10.0 9.21 6.17
2.05 1.65 5.18 2.97 2.43 2.14 15.78 19.5 19.15 7.73
0.12 0.05 4.69 1.4 0.72 1.63 10.56 11.13 11.24 5.45
0.16 0.4 30.0 2.5 5.76 8.43 40.03 29.37 46.13 16.07
1.54 1.42 0.0 0.0 0.0 0.0 5.14 10.14 6.25 1.62
0.0 0.0 6.04 2.61 1.16 1.78 29.47 52.84 35.13 15.17
0.0 0.0 6.81 6.0 5.19 7.88 11.54 19.37 22.02 17.22
0.0 0.0 1.67 1.0 0.24 0.24 4.12 4.5 4.8 1.45
0.51 0.42 5.31 6.75 2.66 2.95 18.76 20.27 25.92 5.88
0.2 0.31 0.08 0.31 0.28 0.09 1.26 2.58 2.65 1.98
0.0 0.02 0.03 0.0 0.0 0.03 0.13 0.11 0.06 0.05
13.02 13.08 0.83 10.74 30.79 69.37 236.87 305.23 279.66 56.86
0.72 0.32 17.08 7.05 6.18 2.37 27.38 29.59 29.43 13.46
0.21 0.04 14.45 2.88 0.93 17.05 45.46 28.84 36.16 12.31
0.0 0.0 0.87 1.36 4.53 5.34 15.23 27.13 17.02 8.12
0.75 0.58 12.75 3.0 3.58 8.68 55.89 32.02 41.87 8.58
0.09 0.04 0.0 0.0 16.38 15.11 155.94 194.84 166.0 9.92
0.15 0.19 28.11 3.95 2.34 3.33 38.46 37.45 52.61 11.85
0.29 0.37 28.85 9.04 6.16 6.01 36.68 40.33 58.67 34.26
1028.58 992.88 1749.29 942.51 2057.62 2853.8 3862.07 3643.85 4952.1 2935.56
0.0 0.0 0.7 0.0 0.07 0.55 1.26 1.7 2.52 0.07
74.57 81.39 317.59 84.99 213.33 281.17 364.0 535.08 683.79 339.15
0.37 0.2 3.1 1.5 1.21 1.98 3.02 5.19 4.54 2.95
0.0 0.06 0.27 0.41 0.1 0.24 0.54 0.75 0.64 0.45
0.11 0.02 1.29 1.18 0.68 0.34 8.27 12.42 8.64 2.37
0.0 0.0 0.11 0.0 0.02 0.01 1.1 0.59 1.2 0.14
0.0 0.0 10.29 1.96 23.42 19.03 45.92 29.46 36.76 15.5
0.77 0.78 8.28 3.51 4.26 4.12 15.79 20.19 13.34 12.12
0.84 0.75 13.97 6.13 8.09 9.05 36.13 59.08 37.11 21.68
0.05 0.0 0.0 0.0 0.07 0.0 0.59 0.78 0.4 0.0
0.44 0.53 1.04 0.53 0.1 0.23 3.59 4.63 2.98 2.66
0.15 0.07 1.07 2.69 2.66 1.56 11.92 13.34 12.78 1.72
0.62 0.37 21.21 8.33 7.4 12.29 26.57 30.04 35.99 22.74
0.87 0.45 0.0 0.4 0.0 0.08 4.08 2.14 3.0 0.43
0.14 0.04 2.96 0.89 0.52 0.84 6.63 8.24 7.39 5.05
0.0 0.0 1.72 1.73 1.05 1.54 9.31 13.44 8.64 5.93
0.0 0.0 0.06 0.06 0.0 0.0 0.1 0.52 0.36 0.12
7.97 5.07 51.62 22.7 6.04 5.91 34.13 54.05 63.04 31.83
0.0 0.0 0.08 0.0 0.08 0.18 0.72 0.64 0.78 0.28
0.05 0.21 0.17 0.19 0.02 0.02 1.51 1.52 1.49 0.86
0.0 0.0 0.16 0.54 0.69 0.93 2.6 3.7 4.02 1.7
0.0 0.0 43.02 62.69 24.81 19.61 202.69 274.03 175.28 86.88
0.0 0.04 0.0 0.0 7.72 5.17 23.77 7.86 13.5 3.03
0.0 0.0 0.28 0.0 1.29 0.87 3.7 4.88 5.2 2.64
0.0 0.0 30.04 22.44 9.59 10.66 54.89 68.22 34.6 38.68
0.0 0.0 0.59 0.92 3.33 2.58 40.57 34.33 57.16 5.2
0.0 0.0 0.0 0.48 0.1 0.0 282.53 430.79 292.22 59.29
5.3 6.31 91.03 24.63 49.55 40.57 225.87 158.06 207.14 116.56
0.11 0.0 13.18 0.22 22.58 11.19 52.66 38.51 34.91 2.46
0.0 0.0 1.15 0.0 0.11 0.21 1.59 1.72 2.02 0.44
0.12 0.1 0.76 0.35 0.29 0.42 3.84 2.45 4.49 1.77
4.12 4.12 15.68 4.7 15.79 15.07 44.78 45.56 61.51 34.24
0.0 0.0 15.22 3.39 4.85 3.96 15.3 17.47 13.19 19.05
0.0 0.0 0.59 0.0 0.04 0.12 1.19 1.71 1.58 0.24
1.31 0.83 13.8 1.8 1.21 1.41 10.3 16.1 18.62 10.78
0.0 0.0 16.98 6.21 3.13 15.43 167.14 205.91 162.0 54.41
0.04 0.0 26.59 24.83 5.45 26.56 114.4 144.46 116.0 79.09
0.0 0.0 0.51 0.1 0.02 0.02 1.59 1.45 1.21 0.33
0.0 0.03 0.0 0.11 0.05 0.0 0.44 0.29 0.3 0.1
0.39 0.46 0.66 0.49 0.22 0.24 1.72 2.91 1.52 1.2
0.0 0.0 0.17 0.2 0.15 1.02 107.64 158.89 101.43 48.56
4.74 5.57 2.97 1.53 2.28 0.74 18.26 10.87 14.75 3.71
13.07 8.43 37.66 17.48 22.42 22.1 77.0 74.25 62.85 40.99
0.12 0.39 2.62 4.64 4.48 4.63 19.31 25.91 22.14 14.92
0.07 0.25 2.62 1.83 3.09 5.47 25.91 28.67 24.33 16.64
0.13 0.03 66.6 1.88 15.11 17.37 126.67 92.16 103.49 26.07
5.84 5.19 30.15 2.66 5.7 7.93 23.95 21.77 19.33 19.61
0.03 0.0 0.04 0.0 0.09 0.1 0.32 0.23 0.24 0.09
0.0 0.0 1.03 0.28 0.25 0.34 2.53 1.25 1.15 0.42
0.0 0.0 0.0 0.0 0.0 0.0 1.2 1.23 1.71 0.0
0.0 0.0 0.93 0.17 0.83 0.64 1.54 2.53 3.49 2.07
12.45 15.67 35.48 25.32 20.16 23.77 33.92 50.67 42.93 39.05
8.8 10.16 62.67 50.97 90.47 52.03 316.79 376.54 391.98 103.27
8.25 6.92 59.5 14.61 23.2 28.01 77.73 103.88 91.02 60.55
0.02 0.01 3.39 4.62 2.28 2.05 4.79 6.65 8.88 5.08
1.14 0.96 3.52 2.56 4.53 3.12 16.9 20.27 22.64 8.0
0.0 0.0 0.7 0.19 0.66 0.74 3.92 2.93 1.42 0.47
0.07 0.17 4.47 2.11 0.3 0.48 3.96 6.35 4.43 5.03
6.14 6.73 9.29 1.19 2.73 3.85 16.34 23.83 24.66 11.6
0.21 0.21 8.71 2.41 3.16 2.69 21.35 17.8 14.45 1.61
2.58 1.73 26.02 6.34 6.16 11.16 35.51 50.87 55.54 33.75
0.0 0.0 0.55 0.47 0.62 1.68 52.67 86.42 60.06 7.3
33.51 33.33 52.82 30.48 41.43 38.57 60.74 56.99 67.86 52.61
9.47 10.17 10.56 11.06 9.88 9.89 12.86 15.06 15.95 12.53
3.48 2.72 16.76 6.05 6.65 7.4 19.86 26.24 38.88 17.97
0.0 0.0 2.96 2.3 1.36 1.6 6.57 10.53 7.95 1.82
4.27 3.85 4.48 2.85 6.56 4.2 17.26 24.93 29.86 14.45
4.58 3.88 15.45 0.84 8.94 12.96 87.28 77.04 121.82 13.68
0.87 0.93 10.48 2.36 3.12 2.46 9.53 10.23 15.12 6.58
2.34 12.07 205.8 24.38 40.9 112.41 212.22 297.98 419.43 157.78
0.05 0.14 0.3 0.09 0.0 0.11 1.31 5.79 3.33 0.25
0.13 0.15 6.07 2.59 3.05 1.73 19.63 22.55 18.25 10.11
1.04 0.77 12.06 4.41 0.78 0.89 6.59 8.53 8.51 6.18
47.94 57.61 79.29 48.74 61.93 78.04 145.56 185.98 176.32 93.62
0.42 0.12 1.35 0.53 1.85 0.91 5.23 4.47 5.01 2.68
6.17 4.87 5.34 6.73 3.34 3.15 13.26 19.06 17.32 13.19
0.0 0.0 8.81 0.58 0.41 1.81 8.35 9.84 10.55 3.12
0.0 0.0 19.1 0.71 7.39 5.46 59.26 46.89 62.46 12.45
2.97 3.91 4.57 7.77 4.17 4.77 10.38 18.87 18.71 9.49
1.59 1.45 3.41 0.56 0.0 0.65 1.77 7.53 6.55 2.6
3.55 2.46 72.21 38.53 29.35 36.87 85.33 124.58 130.59 55.79
0.02 0.14 1.25 2.45 1.55 2.47 4.14 9.93 7.73 4.89
0.08 0.07 219.53 31.82 81.02 67.02 216.22 312.65 364.45 200.0
43.03 48.26 62.52 50.15 69.21 55.99 84.83 72.33 77.95 59.93
0.0 0.0 0.3 0.03 0.34 0.43 4.57 1.67 2.26 0.22
8.74 9.52 14.88 8.14 9.92 11.43 16.81 15.53 17.09 13.13
15.35 12.51 40.01 38.0 7.7 4.28 110.9 115.27 120.19 76.48
1.1 1.14 60.37 7.41 11.28 10.02 76.4 84.63 89.2 47.68
0.0 0.02 0.29 0.02 0.02 0.04 0.29 0.66 0.74 0.15
1.41 0.36 81.7 16.71 1.77 23.76 74.34 95.98 161.14 65.89
0.0 0.0 38.24 9.11 12.77 19.88 241.63 354.58 356.05 144.78
7.85 8.87 1.27 0.27 0.31 2.74 77.63 66.46 54.02 6.41
0.66 0.44 15.42 6.06 4.76 6.85 23.02 33.57 28.42 19.95
1.28 1.03 1.09 1.1 1.03 0.69 3.16 4.71 5.34 2.11
0.0 0.0 0.06 0.0 0.0 0.0 3.17 5.87 4.04 1.01
0.46 0.37 8.06 5.05 1.38 0.82 33.83 47.89 52.16 27.09
82.49 77.17 87.32 101.29 109.5 127.44 197.14 146.68 196.18 107.02
0.0 0.0 0.0 0.06 1.2 0.54 3.17 0.66 2.72 0.19
0.0 0.0 1.34 0.39 1.67 1.72 11.69 12.56 7.82 1.4
74.25 81.04 74.8 41.48 102.27 104.8 143.47 165.11 166.56 77.5
0.66 0.55 1.16 0.46 0.76 0.49 6.83 5.48 5.77 2.2
0.99 0.99 9.48 7.44 3.7 4.64 25.47 33.84 21.93 13.51
57.95 55.46 78.04 62.49 69.54 73.03 93.71 103.86 102.13 87.4
0.0 0.0 0.39 0.03 0.03 0.0 0.6 0.73 0.99 0.33
0.0 0.0 313.48 66.09 149.37 126.97 528.09 620.15 541.34 318.02
6.6 7.26 13.5 10.45 10.45 12.08 22.94 26.87 19.6 18.59
0.08 0.07 1.33 0.9 0.92 0.75 1.69 7.3 4.73 2.1
0.0 0.0 1.39 0.5 0.65 0.31 3.93 2.08 3.22 0.14
15.05 12.23 33.47 19.84 25.99 27.95 42.87 40.31 46.88 26.89
0.02 0.04 1.69 0.33 0.39 0.34 4.55 5.82 6.29 3.88
0.0 0.0 2.41 1.09 3.12 0.78 14.59 22.39 13.62 7.43
0.0 0.0 0.69 0.27 0.16 0.04 0.35 0.96 0.57 0.32
0.0 0.0 4.48 0.64 23.89 12.55 64.14 44.31 24.21 2.0
0.0 0.0 2.33 3.23 3.99 2.57 9.14 13.55 5.59 0.27
24.24 25.27 37.79 24.02 16.05 12.97 88.6 123.34 137.79 75.71
0.08 0.0 2.37 1.09 0.59 0.26 4.94 11.57 11.47 2.23
0.24 0.08 47.63 18.22 18.17 13.71 68.69 87.3 96.36 68.12
1.19 1.17 11.04 1.8 4.08 2.49 58.97 71.57 59.89 29.3
1.53 0.32 6.74 6.53 4.42 8.17 19.05 31.52 17.37 15.14
0.0 0.0 0.0 0.0 0.0 0.0 0.15 0.08 0.19 0.0
9.62 5.78 10.29 8.78 11.4 7.07 44.73 40.22 30.96 22.81
1.07 0.29 1.32 1.04 25.82 22.71 75.1 70.67 74.74 5.66
0.0 0.0 0.18 0.14 0.29 0.09 0.85 0.53 0.62 0.08
0.03 0.16 0.15 0.15 0.35 0.29 1.43 1.53 1.66 0.4
0.26 0.18 2.12 1.04 0.44 0.39 3.94 3.96 5.02 2.19
2.63 2.94 16.35 4.24 2.5 2.56 48.39 63.25 69.13 42.62
118.29 116.6 279.98 146.41 151.55 133.01 361.94 412.39 404.91 297.95
4.18 5.02 6.07 9.63 6.31 6.98 32.77 34.49 25.16 14.13
0.0 0.06 6.41 1.49 2.96 3.14 4.66 6.91 9.77 3.24
0.73 0.33 45.95 8.52 9.26 7.33 39.56 79.64 98.14 55.1
0.71 0.54 12.85 2.74 8.2 3.8 70.15 98.92 72.52 21.79
0.0 0.04 9.58 1.29 0.73 0.84 35.74 54.43 38.58 16.4
0.0 0.05 0.0 0.0 0.08 0.0 3.5 3.56 0.71 1.11
28.85 29.43 194.64 16.25 34.62 18.68 220.02 341.39 389.55 169.67
0.43 0.16 4.47 1.17 1.74 1.89 5.87 6.57 7.28 5.9
9.74 9.65 13.06 9.45 10.75 11.07 21.78 21.93 26.24 14.16
4.63 3.62 15.17 11.21 13.21 10.38 31.1 40.25 33.64 18.66
0.0 0.08 707.84 162.08 334.9 169.77 294.29 844.81 753.83 685.22
0.07 0.03 1.67 0.51 0.6 0.21 11.63 13.75 18.53 3.65
0.34 0.3 1.1 0.38 0.89 1.41 2.15 1.66 2.25 1.06
0.0 0.0 0.0 0.0 0.0 0.11 0.5 1.61 1.23 0.49
0.0 0.0 0.0 0.0 0.0 0.0 1.1 0.59 1.24 0.0
5.08 2.99 13.53 8.46 8.39 6.4 19.54 28.55 18.3 13.88
0.0 0.0 0.0 0.0 0.04 0.0 0.39 0.25 0.19 0.0
7.47 8.86 12.19 9.0 9.67 10.39 27.09 20.61 25.51 11.92
0.07 0.12 0.1 0.0 0.29 0.58 20.17 18.07 28.69 4.52
0.0 0.0 0.0 0.0 0.0 0.6 154.04 109.42 138.35 21.19
1.26 1.39 16.7 3.03 3.78 5.51 27.29 28.22 38.03 21.15
0.0 0.0 8.62 3.5 4.12 3.12 6.04 12.25 14.27 6.6
0.0 0.0 0.86 0.66 0.0 0.0 2.78 1.68 1.67 0.59
0.28 0.04 0.4 0.31 0.46 0.4 2.26 2.04 1.46 0.51
0.08 0.12 4.78 3.79 4.77 4.74 27.25 36.54 47.46 16.76
0.0 0.24 2.79 0.44 0.26 0.49 2.65 6.88 10.39 4.75
0.0 0.0 1.39 0.22 0.05 0.04 0.18 3.1 3.42 0.64
2.05 1.43 41.22 9.63 14.12 10.65 93.5 136.36 142.5 56.38
0.58 1.51 1.87 2.93 0.62 0.48 12.95 21.82 25.62 8.45
19.1 14.41 56.54 19.23 58.07 75.89 149.45 175.78 191.28 69.87
0.21 0.19 13.35 11.1 5.64 7.06 25.61 28.25 42.04 18.15
0.0 0.0 32.59 9.88 3.4 5.37 91.79 131.54 195.08 41.03
0.12 0.05 1.86 0.12 0.38 0.44 3.03 5.47 3.18 2.34
0.1 0.02 0.4 0.0 0.31 0.26 10.89 16.43 13.28 4.79
0.05 0.0 0.07 0.0 0.0 0.0 0.23 0.07 0.29 0.0
31.5 30.11 27.56 68.66 66.92 39.83 111.72 137.49 103.09 43.41
0.31 0.22 0.05 0.26 1.75 0.38 3.78 4.2 3.85 0.22
0.0 0.0 0.43 0.79 0.06 0.02 0.69 1.98 0.9 0.63
0.0 0.01 0.11 0.12 0.04 0.05 0.0 0.45 0.2 0.01
0.0 0.03 0.4 0.06 0.05 0.08 7.07 13.94 7.83 1.82
0.39 0.22 5.42 5.85 8.01 9.17 68.07 103.55 77.48 23.43
0.0 0.0 0.0 0.0 0.71 0.51 3.0 1.91 3.16 0.76
0.05 0.0 1.48 0.79 0.22 0.37 6.73 12.05 12.15 6.06
0.0 0.0 0.28 3.07 0.38 1.9 2.36 6.49 8.18 1.6
0.45 0.51 5.29 4.11 1.38 1.41 16.47 17.15 13.14 8.07
0.43 0.45 5.0 0.5 2.98 2.75 17.51 19.16 35.85 10.03
13.76 17.38 9.66 0.65 8.13 22.74 85.78 122.21 107.72 20.73
0.67 0.38 3.65 0.75 0.38 1.07 2.21 2.55 2.58 1.78
1.63 0.45 4.44 1.33 3.73 2.87 17.25 20.51 16.22 12.78
0.2 0.06 1.07 0.16 0.0 0.05 1.51 2.62 2.59 1.32
0.21 0.11 27.68 4.64 7.36 5.56 29.53 56.52 54.99 24.49
0.3 0.53 3.21 1.39 0.6 0.52 8.31 19.37 19.29 8.54
17.91 19.54 253.57 68.75 56.05 56.51 303.51 372.79 379.05 210.16
0.0 0.0 11.86 4.22 4.27 6.69 21.73 22.73 19.63 8.25
4.02 5.0 27.14 9.1 9.48 12.78 34.99 47.65 36.37 25.34
0.11 0.07 0.22 0.0 0.49 0.52 1.6 2.66 2.02 0.13
9.74 8.4 63.37 28.01 24.95 34.56 140.13 216.97 124.64 54.88
0.01 0.0 0.13 0.1 0.06 0.02 0.67 0.71 0.16 0.03
25.9 29.1 23.99 30.92 30.32 31.43 55.77 71.34 66.57 46.52
6.45 7.6 15.42 4.0 7.25 9.15 54.41 41.26 44.58 11.61
0.52 0.9 41.04 11.61 27.08 30.31 144.75 49.87 116.04 18.04

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)