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Heatmap: Cluster_111 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
3.35 2.85 4.0 1.91 0.87 0.97 5.69 5.17 2.65 2.12
0.0 0.0 2.59 0.0 0.0 0.0 3.05 0.0 0.0 0.0
0.0 0.05 0.07 0.0 0.0 0.22 0.52 0.0 0.0 0.0
0.0 0.0 0.97 0.18 0.0 0.0 0.83 0.23 0.27 0.16
7.99 8.6 28.68 2.8 4.82 6.51 16.08 7.03 9.79 2.61
4.82 5.23 13.24 6.04 1.46 3.37 8.5 4.54 3.38 3.19
0.0 0.0 1.56 1.44 1.68 2.11 17.55 5.0 6.82 1.08
0.79 0.91 4.31 9.15 7.69 2.74 26.48 14.51 17.74 7.04
0.0 0.0 0.65 0.52 0.0 0.0 3.79 1.1 1.44 0.27
11.81 11.85 17.89 16.03 10.05 10.86 16.46 12.96 13.53 12.57
0.06 0.04 0.1 0.06 0.04 0.09 0.27 0.02 0.02 0.01
0.89 0.89 1.33 1.75 0.8 0.5 0.85 0.78 0.93 0.76
0.04 0.06 0.29 0.05 0.05 0.04 0.27 0.0 0.04 0.24
0.0 0.0 5.12 1.57 1.06 2.09 21.9 8.64 7.54 1.87
0.03 0.03 3.48 2.78 0.04 0.27 23.79 7.59 10.39 2.74
2.83 3.86 8.65 7.09 4.42 0.89 8.03 1.93 3.86 5.3
0.0 0.0 2.36 0.68 0.27 0.4 11.85 3.3 1.64 0.44
0.0 0.0 199.73 115.08 206.68 327.33 2175.14 1325.13 843.62 337.44
5.37 5.07 28.16 4.66 7.59 9.65 37.06 19.65 14.98 7.17
0.84 0.38 2.4 1.69 0.26 0.33 1.85 0.76 0.53 0.42
3.26 3.72 13.4 5.31 2.72 4.23 6.49 5.29 3.15 1.67
0.61 0.88 4.52 4.94 0.96 1.3 25.94 10.1 11.11 5.4
0.2 0.06 7.76 8.18 3.8 6.37 55.11 29.97 18.33 4.28
0.0 0.0 2.61 0.5 1.58 1.96 17.23 9.19 7.76 2.68
114.05 111.08 120.13 120.86 110.67 110.89 154.71 125.51 124.53 113.06
52.38 53.66 70.67 67.22 68.41 55.25 95.6 69.3 68.19 52.96
0.26 0.24 1.26 0.0 0.0 0.0 2.39 0.0 0.0 0.0
1.11 1.05 4.13 0.84 0.36 0.5 2.43 1.63 1.41 2.13
0.12 0.21 0.55 0.37 0.0 0.08 1.2 1.11 0.83 0.08
0.0 0.0 0.07 0.0 0.0 0.0 0.09 0.02 0.02 0.0
3.44 4.77 4.92 6.77 2.85 3.0 5.56 3.68 3.66 2.56
0.35 2.54 0.36 3.74 0.32 0.0 2.73 0.73 0.22 1.08
0.48 0.75 2.44 1.54 0.0 0.43 6.79 2.33 1.5 0.97
0.0 0.0 0.3 0.08 0.0 0.06 0.52 0.21 0.13 0.05
0.35 0.31 1.03 0.34 0.0 0.0 0.89 0.24 0.44 0.35
2.18 2.88 9.2 6.18 5.31 2.95 8.26 5.73 3.85 4.04
0.0 0.0 0.31 0.24 0.2 0.0 0.68 0.19 0.0 0.0
0.34 0.15 0.26 0.29 0.08 0.0 0.29 0.08 0.07 0.0
0.69 1.09 3.28 2.23 1.93 2.35 10.13 4.81 4.66 4.35
1.54 1.37 1.67 3.61 0.84 1.08 1.82 1.33 1.5 0.85
8.18 6.59 15.26 18.77 0.0 0.0 19.29 0.0 0.0 1.25
0.07 0.02 0.31 0.03 0.21 0.21 2.83 1.48 0.93 0.45
0.07 0.03 0.4 0.4 0.1 0.04 0.55 0.05 0.11 0.17
0.36 0.19 1.13 0.83 0.05 0.23 1.55 0.2 0.54 0.44
0.2 0.26 1.04 1.0 0.15 0.23 1.27 0.28 0.25 0.3
0.46 0.14 1.23 0.71 0.0 0.0 2.4 0.22 0.19 0.95
0.64 0.59 3.96 2.9 0.0 1.56 20.45 1.66 3.86 2.7
82.36 81.48 108.14 83.22 73.1 52.07 130.47 88.46 83.5 82.84
2.63 5.83 10.12 11.26 4.71 5.75 0.0 6.25 3.86 3.34
0.0 0.83 1.74 3.77 0.0 0.0 0.0 0.0 0.0 0.0
7.54 7.25 24.92 11.5 0.0 14.74 17.41 9.69 11.58 14.44
2.54 2.77 5.79 3.75 5.39 5.21 20.36 11.35 9.6 3.76
0.33 0.18 0.99 0.26 0.23 0.31 0.53 0.35 0.46 0.2
0.0 0.0 0.0 0.0 0.0 0.15 0.65 0.0 0.0 0.0
1.84 1.41 1.06 0.77 3.99 4.05 16.59 7.33 7.02 2.02
2.08 0.54 2.7 2.94 1.2 2.61 9.61 3.35 4.8 3.53
0.16 0.0 1.5 0.31 0.12 0.09 0.63 0.12 0.21 0.08
0.43 0.0 0.86 0.66 0.13 0.0 1.53 0.0 0.0 0.17
1.09 0.84 1.82 1.56 0.99 1.33 3.51 1.52 1.56 0.6
0.45 0.18 2.52 0.85 0.29 0.44 3.78 1.34 0.93 0.97
0.15 0.14 2.43 1.41 0.27 1.54 2.77 0.85 0.58 0.47
7.37 8.81 5.7 12.67 8.64 10.24 29.7 17.41 18.0 10.6
0.51 0.26 4.21 0.27 0.54 0.16 3.91 2.35 1.36 1.6
10.7 12.23 12.57 9.76 12.19 9.59 25.23 17.71 16.66 12.15
0.0 0.0 0.75 0.0 0.42 0.46 6.24 2.57 1.98 0.58
0.0 0.0 0.96 1.4 0.0 0.0 1.97 0.7 0.62 0.26
0.0 0.0 2.32 0.9 0.0 0.0 1.11 0.0 0.54 0.11
0.0 0.0 5.51 5.69 2.02 6.76 53.32 16.34 17.69 4.5
0.0 0.0 13.58 0.0 0.0 1.01 9.75 0.64 0.59 0.0
0.01 0.02 0.05 0.02 0.06 0.03 0.38 0.21 0.39 0.05
0.26 0.26 0.48 0.41 0.21 0.31 1.1 0.65 0.77 0.28
0.0 0.0 0.4 0.41 0.07 0.03 6.1 2.12 1.39 0.35
0.46 0.21 2.97 1.72 0.0 0.0 3.0 0.32 0.58 0.48
2.19 2.32 5.39 1.13 1.93 0.94 3.33 0.9 1.13 0.53
0.98 0.36 4.51 0.95 0.37 0.8 3.05 0.0 0.74 0.2
0.27 0.24 1.95 0.46 0.24 0.24 1.67 1.23 0.97 0.75
17.73 19.02 22.48 28.36 10.59 8.81 23.0 16.56 11.83 8.37
0.91 0.68 1.8 0.69 0.0 0.0 2.75 0.0 0.0 0.16
0.13 0.14 3.79 1.68 0.7 1.41 6.21 2.05 1.94 0.53
0.0 0.0 4.36 0.0 0.0 0.0 5.51 0.0 1.41 1.25
0.0 0.22 0.51 0.0 0.0 0.0 1.24 0.0 0.0 0.0
4.63 7.06 0.64 9.27 2.26 3.25 5.79 1.11 2.0 1.8
0.0 0.0 5.23 0.22 0.06 0.09 4.61 0.36 0.32 0.06
0.0 0.04 0.07 0.24 0.0 0.11 0.0 0.0 0.0 0.05

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)