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Heatmap: Cluster_19 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
2.54 2.06 - - - - - - - -
2.42 2.22 - - - - - - - -
1.43 2.87 - - - - - - - -
2.46 1.64 -4.29 -3.66 -0.71 -0.69 - -7.87 - -5.85
1.99 2.59 - - - - - - - -
2.85 1.48 - - - - - - - -
2.5 2.05 -3.23 - - - -5.82 - -5.03 -4.32
2.11 1.62 -4.0 -3.1 -0.74 0.77 -3.37 -4.71 - -
3.08 0.6 - - - - - - - -
1.91 1.54 - - -1.37 0.52 - -0.51 -1.68 -0.99
1.98 1.79 - -5.27 0.61 -0.05 -5.6 -5.71 -6.1 -5.97
2.4 2.24 - - - - - - - -
2.51 0.5 - -0.8 - -5.67 -0.62 -1.03 -1.63 -0.28
1.96 1.7 -0.01 -1.57 -0.85 -1.65 -1.49 -3.18 -3.35 -3.4
2.4 2.24 - - - - - - - -
2.11 -0.59 -0.0 -1.16 -0.7 -0.67 0.18 -0.66 -0.84 -
2.22 2.1 -2.26 - - - - -2.28 -1.46 -1.8
0.87 3.03 - - - - - - - -
2.1 1.65 -1.3 -0.88 -2.54 - - -3.39 -0.33 -0.81
2.17 1.78 -5.25 -2.06 -1.65 -2.16 -3.11 -2.47 -1.44 -0.8
2.72 0.87 - -1.66 -0.81 -2.2 - -1.78 - -2.31
2.76 1.68 - - - - - - - -
2.4 2.24 - - - - - - - -
2.79 1.63 - - - - - - - -
2.54 1.47 - 0.49 - - - - - -
2.14 2.09 -2.77 -5.2 - - -2.77 -1.5 -1.58 -1.57
1.58 2.44 -0.11 - - -0.65 - - - -
2.45 1.89 -2.89 - -2.01 -1.18 - -5.37 - -
2.15 1.94 -3.47 -4.48 -0.43 -0.25 - - - -7.0
2.53 1.76 -4.21 -4.97 -1.31 -1.59 - - -8.06 -
2.34 1.72 -4.48 -3.46 -0.4 -0.43 - -7.02 - -
2.22 2.04 - -1.61 -0.35 - -3.46 - - -5.42
2.1 1.25 -0.8 -1.86 -0.6 0.21 -1.38 -2.88 -2.96 -5.21
2.4 2.24 - - - - - - - -
1.92 1.36 0.4 -1.63 -0.45 -0.92 -2.45 -1.76 -3.5 -2.47
2.66 1.88 - - - - - - - -
2.56 1.43 - - - - - - -0.92 -0.19
3.12 -0.1 - - - - -1.52 - - -
1.75 1.06 -4.24 -0.77 -0.19 -0.72 -0.68 -0.77 -0.38 -1.2
2.4 2.24 - - - - - - - -
2.79 1.63 - - - - - - - -
2.09 2.52 - - - - - - - -
2.94 1.21 - - - - - - - -
2.4 2.24 - - - - - - - -
2.1 2.51 - - - - - - - -
2.41 1.77 - - - -2.45 -2.17 -2.02 -1.2 -2.55
2.5 1.89 - - - - - -1.53 -1.71 -
3.09 0.6 - - - - - - - -
2.18 1.21 -1.75 -0.58 - - -0.87 -1.71 0.43 -
1.85 2.68 - - - - - - - -
2.58 2.01 - - - - - - - -
2.69 1.2 - - - - - - - 0.34
2.05 1.88 - - -2.13 - -1.24 -2.09 -0.69 -0.62
3.15 0.18 - - - - - - - -
1.79 1.39 0.15 -1.18 -1.26 -1.74 -0.15 -1.97 -2.55 -1.59
2.46 2.17 - - - - - - - -
2.12 2.47 -3.02 - - - - - - -
2.38 2.27 - - - - - - - -
2.75 1.67 - - -5.28 -4.09 - - - -
3.32 - - - - - - - - -
2.63 1.93 - - - - - - - -
2.39 2.25 - - - - - - - -
2.32 2.01 - -0.75 - - - - -1.64 -3.96
1.8 1.94 -1.73 -0.55 -1.77 0.15 - -1.79 - -
2.73 1.14 - 0.23 - - - - - -
2.77 1.67 - - - - - - - -
1.73 1.47 0.63 -0.58 -2.3 -3.71 -0.49 -2.03 -1.72 -2.53
2.4 2.24 - - - - - - - -
2.31 2.02 -1.83 - - -2.19 - -1.78 - -2.3
2.79 1.62 - - - - - - - -
2.34 2.2 - -2.92 - - - - -2.48 -
3.03 0.87 - - - - - - - -
2.44 1.64 - -3.38 -4.61 0.35 - - - -4.14
2.25 2.39 - - - - - - - -
2.21 1.4 -2.01 - -0.97 -1.13 -1.67 -2.52 -0.7 -1.24
2.4 0.25 - - - - - 0.9 0.73 -
2.4 2.24 - - - - - - - -
2.58 1.67 - - - - - -0.24 - -
2.34 1.19 -3.31 -1.56 -1.69 -2.07 -2.38 -0.91 -0.6 -1.76
2.54 1.16 -3.12 -4.95 -0.17 -0.21 - -5.03 - -
2.85 1.48 - - - - - - - -
2.56 1.59 - - - - -0.22 -2.07 - -
2.52 0.29 - 0.53 -2.6 -4.0 -1.47 -2.06 -0.91 -1.98
2.95 1.2 - - - - - - - -
1.97 2.39 -1.01 - - - - -1.52 - -
2.07 1.66 -4.02 -3.9 -2.23 1.19 -6.86 -7.15 -6.9 -
1.83 2.12 - - - - - - 0.73 -1.2
1.94 2.54 - - - - - - - -1.55
1.85 2.68 - - - - - - - -
2.05 2.55 - - - - - - - -
2.3 1.65 -1.21 -2.12 -2.22 -0.0 - - - -4.66
2.29 1.53 -2.56 -1.07 -0.71 -0.32 - -3.47 - -4.0
1.78 2.14 -2.62 - - -1.92 -0.04 -1.47 - -1.42
3.03 0.87 - - - - - - - -
2.88 1.4 - - - - - - - -
2.4 2.24 - - - - - - - -
1.94 1.69 -2.5 -0.71 -1.76 -1.8 -1.73 -1.31 -2.0 -0.66
2.79 1.63 - - - - - - - -
2.49 2.13 - - - - - - - -
2.27 2.01 -2.36 -2.2 - - - -2.27 -1.45 -2.8
3.02 0.93 - - - - - - - -
2.79 1.63 - - - - - - - -
2.72 1.77 - - - - - - - -
1.49 2.0 -4.01 -0.76 -2.5 -2.35 -1.61 -0.96 -0.48 -0.72
2.63 1.88 - - - - - -2.71 - -
2.79 1.63 - - - - - - - -
3.03 0.86 - - - - - - - -
2.52 1.46 - - - - - - 0.14 -1.2
1.96 2.2 - - -0.59 -0.22 - - - -
1.91 1.7 -2.85 -2.5 -0.55 -0.52 -1.51 -1.39 -1.54 -2.12
1.88 2.36 - - -3.3 0.1 - - - -
2.7 0.53 - - - - - - 1.02 -
2.92 0.7 - - - - - - -0.3 -
2.72 1.77 - - - - - - - -
3.15 0.18 - - - - - - - -
2.56 1.4 - - 0.58 - - - - -
1.93 1.86 -1.75 -2.46 -0.34 -0.37 -2.17 -3.04 -3.71 -3.54
2.09 2.26 - - - - -1.13 -1.0 - -
2.79 1.63 - - - - - - - -
2.05 2.4 - -1.46 - -2.29 - - - -
2.63 1.49 -4.88 - -0.72 -1.5 - - - -
2.78 1.65 - - - - - - - -
2.46 1.84 -4.31 -5.56 -1.42 -1.08 - - -6.79 -
2.27 1.85 -1.88 -2.83 -0.7 -1.05 -5.39 -6.4 -7.38 -5.92
2.19 2.12 - - - 0.15 - - - -
2.4 2.24 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.