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Heatmap: Cluster_148 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
1.52 2.17 - - 0.56 0.21 - - - -
1.09 0.82 -2.21 -0.03 0.37 -0.29 - 0.1 -1.4 0.43
1.31 2.11 - - 0.51 0.83 - - - -
1.95 0.79 -2.56 -2.07 1.19 0.79 - - - -
1.54 1.2 -4.4 -5.03 0.67 1.64 -6.67 -7.32 -8.69 -7.13
1.08 -0.5 -1.43 - -0.43 1.77 1.02 -1.42 - -1.94
1.28 1.22 -0.9 0.28 -0.92 1.38 - - - -1.44
1.34 0.81 0.87 -1.11 0.26 0.81 -2.89 -3.73 -3.04 -2.84
-0.43 0.93 0.06 0.6 0.55 0.26 - -0.97 0.31 -1.38
1.57 1.86 - - - 1.06 - 0.39 - -
1.25 1.3 -0.11 -2.8 -1.75 1.37 -1.91 -1.26 -2.02 -1.8
1.77 1.6 - - - 1.83 - - - -
1.55 2.01 - - -0.87 1.33 - - - -
2.1 - 2.51 - - - - - - -
0.19 0.16 0.18 0.27 -0.03 0.1 -0.47 -0.13 -0.27 -0.18
0.59 0.52 -2.69 -1.92 1.06 2.16 - -3.26 - -
1.27 1.45 - - 0.14 -0.8 1.03 -1.4 - -0.37
1.6 1.3 - -0.03 - -0.72 1.08 - - -0.28
1.41 -0.76 1.58 0.18 0.94 -0.47 - - - -
1.23 0.04 1.65 -0.39 0.83 -0.3 - - -2.99 -
0.91 0.27 1.7 -0.15 -0.1 -0.06 -2.29 -3.13 -1.8 -1.93
1.28 0.41 0.79 -0.02 0.38 -0.53 - -1.5 -1.04 -0.54
0.4 0.28 1.92 0.6 -0.93 -1.42 - -1.29 -0.41 -3.23
0.11 0.21 0.33 0.62 0.15 0.46 -2.86 -0.02 -0.19 -1.05
0.8 1.0 -3.83 0.15 0.36 -0.4 -0.94 -0.33 -0.27 -0.14
1.4 1.32 2.28 - - - - - - -
-0.06 0.11 0.33 0.21 0.09 0.21 -0.85 0.04 -0.17 -0.21
1.75 1.9 - 0.27 - -0.19 - - - -0.28
1.72 0.43 -0.22 -0.77 1.15 0.66 - - - -3.19
0.96 0.41 0.08 0.11 -0.34 0.6 0.19 -1.14 -1.79 -1.36
0.2 1.16 0.81 - 0.18 0.61 -0.33 -0.17 - -0.93
1.74 1.58 - - - 1.88 - - - -
0.9 1.06 - -0.29 -0.55 0.04 - 0.39 0.81 -1.11
2.33 1.17 - - - 0.56 - - - 0.34
0.75 0.41 -0.02 0.36 -0.06 0.04 -0.72 -0.56 -0.52 -0.42
0.61 0.55 -0.1 0.29 -0.09 -0.06 -0.76 -0.26 -0.57 -0.23
-1.14 1.28 0.53 -1.27 -0.57 0.6 0.21 -1.65 0.18 -1.14
0.85 0.68 -0.39 -0.69 -0.77 0.41 -0.15 -0.7 -0.18 -0.14
2.94 1.21 - - - - - - - -
0.77 0.54 -3.64 - 1.24 2.14 - - - -
2.06 0.7 - 0.18 - -0.29 0.99 - - -1.97
1.48 1.38 -1.06 -1.57 -0.57 0.94 -0.15 - -2.18 -3.52
1.84 1.09 - - - 1.37 - 0.76 - -
1.27 -0.58 1.2 0.33 1.28 -0.1 - - - -
3.32 - - - - - - - - -
1.61 1.33 -4.23 - -0.78 1.92 - -5.76 - -7.25
1.05 -0.11 1.68 - 0.6 1.19 - - - -
1.58 0.64 -0.18 -1.53 0.94 1.21 - - - -
2.05 1.2 1.83 - - - - - - -
1.92 0.8 -0.54 -0.37 -0.22 1.11 - - - -
1.79 1.04 -1.03 -0.83 0.41 -0.6 - - - 0.53
0.82 0.69 1.52 0.21 -0.82 -0.67 -3.39 -1.23 -0.95 -1.44
1.74 0.84 - -0.91 - -1.48 - 0.92 1.06 -
1.26 0.62 -0.22 -0.88 -0.39 0.52 -0.7 -0.08 -1.32 -0.97
0.67 0.76 -1.46 -0.12 -0.01 -0.15 0.7 -0.84 -0.03 -1.42
0.04 0.19 0.28 0.66 0.05 0.69 -0.91 -0.71 -1.46 -0.17
1.63 1.9 - -2.26 -2.39 1.22 - -2.36 -2.54 -3.89
0.16 0.12 0.23 -0.05 0.02 0.47 -0.79 -0.04 -0.26 -0.19
3.32 - - - - - - - - -
1.49 1.38 -1.0 -2.43 -0.52 1.03 - -0.69 -1.39 -2.6
1.73 2.14 - - 1.18 - - - - -
0.28 0.29 0.15 -0.19 0.17 0.92 0.53 -0.32 -1.72 -
0.93 1.82 - - 1.37 0.99 - - - -
0.23 0.27 0.21 0.2 -0.08 0.05 -0.26 -0.04 -0.31 -0.46
0.64 1.06 0.56 -1.27 0.14 1.16 - -1.45 - -0.38
1.82 1.34 0.01 - - 0.61 - - - 0.48
2.07 1.1 - - -0.22 0.96 - -0.24 - -
1.73 2.74 - - - - - - - -
0.34 -0.14 1.28 0.57 -0.53 0.04 -1.39 -0.82 -0.46 -0.93
1.52 2.41 - - - 0.86 - - - -
1.17 0.99 0.63 0.53 -0.21 0.66 - -5.01 -2.87 -2.54
2.28 - - - - 2.37 - - - -
- 1.79 2.71 - - - - - - -
1.33 2.39 - - - 1.18 - - - -
1.44 1.05 - 0.77 0.08 -0.3 - - -1.04 0.19
0.68 0.38 1.75 0.64 -0.11 -2.19 - -2.18 -1.04 -1.6
1.93 2.63 - - - - - - - -
1.03 0.85 0.17 -1.12 0.24 -0.12 0.25 -0.73 -1.91 -1.3
0.75 0.94 -2.34 -2.0 -0.74 1.77 0.82 -3.2 - -3.83
1.08 0.55 - -3.23 0.71 2.16 -2.2 - - -
2.14 0.77 - - - -0.34 - -0.19 0.66 -0.63
1.73 0.38 - - 1.46 1.37 - - - -4.01
1.06 2.25 - - 0.18 1.01 - - - -
0.87 0.83 -1.61 -4.65 0.52 2.2 - - - -
3.32 - - - - - - - - -
0.29 1.07 0.36 -0.41 0.23 0.36 -1.57 -0.03 -0.79 -1.76
1.74 - 1.28 0.41 - 1.13 - - - -0.5
0.38 0.42 0.42 0.78 -0.03 0.02 -1.01 -0.42 -0.89 -0.94
0.6 0.62 0.48 -0.8 0.04 0.39 -2.45 0.07 -0.31 -0.74
1.96 1.56 - - 0.77 0.55 - - - -
1.1 1.24 -1.77 -3.57 1.3 1.41 - - - -
0.42 0.71 0.28 0.4 -0.34 0.25 -0.65 -0.67 -1.53 -0.15
1.54 1.39 -3.64 -0.68 0.01 -0.79 0.67 -3.49 -1.67 -2.44

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.