Heatmap: Cluster_154 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g01890.1	-3.4	-4.16	-0.66	0.46	1.23	0.13	-0.47	0.64	0.37	-0.26
Bradi1g04200.1	-0.47	-0.45	-0.81	0.23	1.07	0.23	-0.52	0.12	-0.2	-0.18
Bradi1g05880.1	-2.16	-2.1	-0.81	0.35	0.15	-0.66	0.37	0.31	0.67	0.87
Bradi1g09800.1	-0.69	-0.74	-1.13	0.56	0.54	-0.31	-0.07	0.06	0.22	0.51
Bradi1g10480.1	-6.5	-5.95	0.01	0.38	0.91	0.16	-0.02	0.1	-0.44	0.9
Bradi1g10540.1	-4.22	-4.53	-0.65	-0.31	1.36	-0.22	-0.33	0.18	0.28	0.92
Bradi1g16750.1	-0.61	-0.58	-0.19	-0.01	0.22	-0.04	0.11	0.3	0.24	0.24
Bradi1g23030.3	-6.36	-6.0	-8.38	1.55	1.46	-0.36	-6.22	-2.32	0.18	1.11
Bradi1g23200.3	-	-	-	0.57	1.37	0.97	-	0.36	-	1.43
Bradi1g26710.5	-2.62	-2.72	-0.84	0.15	0.39	-0.35	-0.01	0.64	0.76	0.75
Bradi1g34600.1	-	-	-3.88	-0.81	0.84	-2.1	-1.12	1.08	0.41	1.78
Bradi1g43600.1	-2.72	-2.08	-2.4	-0.04	0.55	-1.05	-0.2	-0.13	-0.0	1.89
Bradi1g45670.1	-4.87	-3.71	-2.77	-0.36	1.01	-1.22	0.15	1.06	0.71	0.76
Bradi1g48790.1	-	-4.33	-1.85	0.1	0.02	-2.4	-1.22	0.78	0.74	1.84
Bradi1g48931.1	-	-	-	-0.1	-	-	0.4	-0.46	0.69	2.43
Bradi1g49207.2	-3.71	-	-	-0.14	-	-2.64	-	1.31	1.69	1.65
Bradi1g52150.6	-0.76	-0.75	-1.25	0.27	0.18	-0.29	0.07	0.21	0.28	0.86
Bradi1g74780.1	-	-	-0.55	1.16	-0.71	-2.08	-2.14	-0.37	-0.57	2.19
Bradi1g76770.1	-6.0	-6.22	-0.64	-0.02	0.64	-0.45	-0.09	0.63	0.58	1.05
Bradi1g78410.1	-1.16	-1.3	-1.12	-0.16	0.41	-0.11	0.15	0.58	0.03	0.93
Bradi2g00250.3	-7.9	-	-	-	-1.56	-1.38	-0.36	0.88	1.12	2.16
Bradi2g03460.5	-0.55	-0.41	-1.3	-0.32	0.2	-0.14	0.14	0.54	0.34	0.57
Bradi2g06840.1	-2.92	-2.11	-1.58	-0.28	0.59	-1.34	-1.98	-0.23	0.51	2.01
Bradi2g10857.1	-3.44	-2.52	0.16	-0.16	1.08	-0.01	-1.18	0.6	-0.31	0.88
Bradi2g11577.1	-2.49	-1.76	-1.15	0.36	0.83	0.41	0.33	-0.08	-0.76	0.93
Bradi2g11821.1	-1.88	-0.63	-0.69	0.8	0.71	0.08	-0.31	-0.16	0.38	0.04
Bradi2g14860.1	-1.87	-3.19	0.87	0.82	1.09	-0.64	-2.26	-0.65	0.43	0.07
Bradi2g21300.1	-1.41	-1.39	-1.04	0.14	0.66	-0.58	0.01	0.32	0.4	0.88
Bradi2g21820.1	-0.54	-0.53	-0.02	-0.05	0.15	-0.41	-0.02	0.07	0.34	0.58
Bradi2g23170.1	-	-3.89	-3.13	0.58	0.76	-0.35	-1.05	0.41	0.24	1.51
Bradi2g23750.1	-0.32	-0.49	-2.99	0.5	-0.45	-0.04	-3.97	0.02	-0.74	1.83
Bradi2g23780.2	-1.03	-0.81	-0.7	0.63	0.5	-0.37	-0.59	-0.27	0.11	1.0
Bradi2g25887.1	-0.82	-1.29	-0.47	-0.26	0.72	-0.4	0.25	0.24	0.01	0.75
Bradi2g27540.1	-	-	0.1	0.61	1.21	0.63	-	0.32	0.82	-0.92
Bradi2g40170.1	-0.56	-0.6	-0.2	0.18	0.35	-0.2	0.17	0.03	0.16	0.32
Bradi2g43050.3	-	-	-	-	-	-	-	-	1.67	2.77
Bradi2g46093.1	-6.79	-6.57	-2.33	1.14	1.43	0.13	-1.99	-0.44	-0.07	0.89
Bradi2g49300.1	-1.29	-1.18	-0.74	0.67	1.3	0.18	-0.62	-0.39	-0.14	0.06
Bradi2g52470.1	-1.13	-1.0	-0.12	-0.33	0.32	0.12	0.32	0.24	0.25	0.47
Bradi2g52640.1	-6.33	-5.27	-3.33	0.51	1.55	-1.15	-0.71	-0.45	1.05	0.72
Bradi2g54265.1	-	-	-	-0.08	2.77	0.77	-	-	-	-0.98
Bradi2g55610.1	-1.98	-0.15	0.1	0.28	0.83	-1.84	-	-0.49	0.94	0.9
Bradi2g55797.2	-9.28	-9.45	-2.73	1.52	1.11	-0.07	-1.81	-0.88	0.1	0.97
Bradi2g56145.1	-5.58	-4.53	-3.07	1.04	1.58	0.8	-1.36	-1.91	-1.49	1.01
Bradi2g58091.1	-3.46	-3.7	-1.82	0.22	1.24	-0.28	-0.28	0.47	0.45	0.69
Bradi3g04750.1	-	-	-1.58	0.52	1.31	0.56	-0.85	0.19	-0.11	0.74
Bradi3g07380.1	-1.27	-1.21	-0.18	0.48	0.41	-0.86	0.08	0.3	0.46	0.41
Bradi3g12510.1	-	-2.6	-2.0	0.17	1.49	0.82	-	-1.93	0.69	1.0
Bradi3g14080.1	-1.0	-0.8	-0.46	0.22	0.2	-0.01	-0.02	0.23	0.12	0.72
Bradi3g26370.5	-	-1.15	-0.16	0.51	0.44	-0.67	0.62	0.0	0.01	0.75
Bradi3g35480.1	-	-	-	1.39	2.06	0.77	-	-1.66	-0.42	-1.17
Bradi3g38592.1	-	-	-	-	-	-2.19	-	0.8	1.36	2.45
Bradi3g47190.3	-	-	-	-	-	-	-	1.01	1.45	2.39
Bradi3g48730.5	-	-	-6.12	-1.6	-2.85	-5.07	-0.85	0.05	1.4	2.4
Bradi3g53491.1	-3.0	-3.23	-2.18	-0.69	0.93	0.58	-0.34	0.25	0.47	1.12
Bradi3g56750.3	-1.21	-1.07	-1.48	1.09	0.75	-0.36	-0.03	-0.26	0.01	0.41
Bradi3g59050.1	-0.66	-0.79	-0.3	0.43	0.3	-0.41	0.19	0.17	0.15	0.35
Bradi4g05830.1	-1.28	-1.19	-0.36	0.24	0.24	-0.41	0.23	0.4	0.46	0.48
Bradi4g10500.2	-3.66	-3.24	-2.6	0.54	1.88	0.73	-1.43	-1.11	-0.02	0.06
Bradi4g11603.1	-	-	-	-	-	-	-	-	-	3.32
Bradi4g17230.1	-5.76	-6.46	0.44	0.52	1.12	-0.08	-0.51	-0.15	0.48	0.08
Bradi4g20690.1	-2.02	-1.9	-3.67	-0.14	1.36	0.17	-0.55	0.56	0.52	0.27
Bradi4g25160.1	-	-	-	-	-	-	-	0.85	1.67	2.33
Bradi4g31430.1	-5.22	-5.59	-1.02	0.65	0.74	-1.29	-2.83	-0.0	0.48	1.71
Bradi4g32530.1	-0.93	-0.94	-0.86	-0.13	0.71	-0.29	0.33	0.58	0.26	0.12
Bradi4g33510.1	-0.09	-0.2	-0.07	0.05	1.05	0.43	-0.81	-0.5	-0.27	-0.54
Bradi4g33975.1	-	-	-3.1	-0.01	1.35	-0.16	-	0.39	0.73	1.31
Bradi4g35867.3	-0.46	-0.38	-0.74	-0.43	0.61	-0.63	-0.17	0.24	0.24	0.79
Bradi4g36360.1	-	-	-4.81	0.56	1.39	-0.34	-2.06	-0.69	0.72	1.37
Bradi4g36420.7	-4.14	-3.78	-3.35	0.84	1.83	0.31	-1.6	-0.39	0.2	-0.09
Bradi5g04030.1	-10.88	-11.04	-1.02	-0.08	0.64	-0.04	0.15	0.8	0.39	0.9
Bradi5g09610.2	-3.12	-2.83	-5.19	-1.47	-0.24	-0.99	-0.12	0.71	0.74	1.92
Bradi5g10107.1	-	-3.38	-2.73	0.76	0.28	0.05	-	1.2	-	1.81
Bradi5g10860.1	-1.69	-1.63	-2.73	0.76	0.78	0.93	-1.44	-0.29	-1.4	1.22
Bradi5g16290.1	-	-	-	1.2	-0.07	-1.8	-	-0.13	0.37	2.09
Bradi5g20520.1	-3.42	-4.27	-0.73	-0.22	0.0	-0.32	0.1	0.87	0.92	0.85

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.