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Heatmap: Cluster_28 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
1.7 1.65 -1.24 -0.98 -0.19 -0.63 -1.59 -1.61 -1.88 -2.09
2.02 2.07 -3.77 -3.07 -0.35 -0.4 -8.2 -8.31 -8.81 -8.35
1.55 1.53 -1.32 -1.42 -0.34 -0.24 -0.88 -1.08 -1.34 -1.52
1.83 1.85 -1.32 -1.54 -0.43 -0.2 -3.47 -2.95 -3.0 -3.02
1.97 2.02 -4.65 -3.67 -0.28 -0.01 -4.85 -5.47 -5.9 -5.82
1.85 1.86 -1.91 -2.29 -0.5 0.02 -2.45 -2.87 -2.79 -3.41
1.66 1.5 -2.65 -0.75 -0.3 -0.48 -0.99 -1.25 -1.32 -1.33
2.08 2.12 -4.83 -4.11 -0.7 -0.86 -4.38 -5.05 -4.43 -4.88
2.07 1.99 -5.03 -5.4 0.03 -0.47 -5.81 -6.99 -7.76 -9.48
1.92 1.83 -2.97 -2.0 -0.08 -0.06 -3.69 -3.36 -3.42 -3.13
1.99 1.79 - - 0.33 -0.03 -1.5 - - -
2.13 2.22 -9.21 - -1.06 -1.02 - - - -
1.97 2.08 -5.0 -4.16 0.01 -0.47 -5.21 -6.92 -7.37 -8.26
1.84 1.74 -1.02 -1.35 -0.28 -0.62 -2.95 -2.54 -2.26 -2.28
2.04 2.03 -5.77 -4.57 -0.43 -0.39 -3.66 -4.07 -4.54 -4.87
2.09 2.1 -4.52 -2.93 -0.89 -0.51 -8.33 -7.36 -6.89 -5.75
1.88 1.94 -2.53 -3.04 -0.1 -0.07 -3.71 -3.92 -3.93 -3.55
1.99 1.94 -3.3 -2.13 -0.34 -0.31 -3.89 -4.91 -3.76 -3.57
2.09 2.19 -3.89 -3.24 -1.73 -0.79 -6.26 -5.1 -3.82 -5.63
1.85 1.89 -3.02 -2.51 -0.31 -0.25 -2.62 -2.54 -2.21 -2.27
1.63 1.61 -1.73 -1.28 0.03 -0.14 -1.67 -1.86 -1.61 -1.77
1.83 1.88 -2.23 -1.7 -0.06 -0.2 -5.02 -3.15 -2.61 -3.27
1.67 1.91 -1.59 -1.56 -0.35 -0.35 -2.34 -2.36 -2.33 -2.15
1.92 2.05 -2.7 -2.85 -0.7 -0.82 -2.7 -2.81 -2.8 -2.71
1.62 1.5 -1.37 -1.63 -0.02 0.12 -1.27 -1.71 -1.78 -1.71
2.02 1.89 -5.51 -5.21 0.17 0.07 -6.9 -8.17 -8.28 -11.08
1.86 1.95 -5.18 -3.49 -0.14 0.13 -3.84 -2.99 -3.17 -3.55
1.96 1.87 -3.51 -2.74 -0.26 -0.64 -2.32 -2.41 -2.42 -2.58
1.63 1.59 -1.19 -1.05 -0.05 -0.19 -2.1 -1.7 -1.85 -1.71
1.67 1.76 -1.13 -1.07 -0.14 -0.3 -2.97 -2.4 -2.29 -1.94
1.7 1.59 -1.88 -1.28 -0.03 -0.04 -1.48 -1.95 -1.63 -2.63
1.64 1.75 -1.23 -0.84 -0.67 -0.62 -1.75 -1.46 -1.66 -1.8
1.18 1.4 -1.06 -0.84 -0.18 -0.27 -0.51 -0.93 -0.79 -0.88
2.1 2.07 -4.86 -3.48 -0.65 -0.92 -3.89 -4.03 -4.3 -4.31
1.13 1.26 -0.65 -0.84 -0.09 0.12 -0.63 -0.91 -1.01 -0.96
1.86 1.95 -3.14 -2.57 0.01 -0.15 -3.68 -2.88 - -3.29
2.0 2.23 -3.97 -4.21 -0.6 -0.92 - - - -
2.04 1.91 -3.36 -2.82 -0.34 -0.49 -3.14 -3.55 -3.66 -3.38
1.77 1.7 -1.39 -0.8 -0.3 -0.22 -3.04 -2.63 -2.24 -2.2
2.05 2.05 -4.07 -3.56 -0.39 -0.6 -4.33 -4.69 -4.71 -4.87
1.99 1.96 -5.48 -4.01 -0.11 -0.21 -4.26 -3.49 -4.1 -4.52
1.77 1.69 -1.59 -1.76 -0.11 -0.29 -2.05 -2.07 -1.88 -2.11
1.94 2.04 -2.56 -2.98 -0.62 -0.61 -2.81 -3.19 -3.13 -3.31
1.79 1.71 -1.92 -1.6 -0.51 -0.14 -1.79 -1.87 -1.95 -2.08
1.43 1.45 -0.84 -0.83 -0.09 0.07 -1.34 -1.42 -1.43 -1.61
1.97 1.96 -3.94 -3.01 -0.29 0.14 - -6.33 -5.19 -4.53
1.82 1.94 -1.69 -1.39 -0.59 -0.59 -3.24 -2.69 -2.63 -2.56
2.08 2.09 -3.39 -3.49 -0.94 -0.96 -3.56 -3.7 -3.75 -4.11
1.8 1.97 -2.3 -3.05 -0.32 -0.39 -1.63 -2.73 -3.33 -2.83
1.94 2.01 -3.95 -3.66 -0.12 -0.21 -3.98 -4.29 -4.05 -4.62
1.84 1.91 -2.98 -2.67 -0.02 -0.26 -2.89 -2.83 -3.1 -2.65
1.46 1.48 -1.26 -1.35 -0.18 -0.47 -0.78 -1.0 -0.97 -1.12
1.95 1.97 -3.9 -3.48 -0.36 0.15 -5.01 -4.07 -4.08 -5.28
1.96 2.0 -4.87 -4.61 -0.2 -0.09 -3.85 -4.16 -4.26 -4.35
2.14 2.11 -5.2 -4.37 -0.82 -1.01 -4.87 -4.56 -4.92 -4.82
1.73 1.72 -1.69 -1.62 -0.18 -0.47 -1.4 -1.76 -1.96 -2.13
1.97 1.97 -4.5 -3.78 -0.21 -0.02 -4.09 -4.2 -4.26 -4.42
1.95 1.91 -2.91 -2.86 -0.22 -0.42 -2.8 -2.95 -3.05 -3.29
1.9 1.91 -2.98 -2.33 -0.26 -0.26 -2.79 -2.98 -2.65 -3.5
2.03 2.02 -4.83 -3.58 -0.37 -0.04 - -8.73 -7.91 -8.26
2.05 2.0 -3.9 -3.03 -0.88 -0.8 -3.12 -2.56 -3.01 -2.62
1.97 1.83 -3.36 -4.08 0.32 -0.02 -4.45 -4.3 -5.89 -5.49
1.87 2.01 -2.55 -2.38 -0.52 -0.52 -4.06 -2.52 -2.33 -3.11
1.86 1.88 -1.78 -1.89 -0.51 -0.62 -2.63 -2.29 -2.13 -2.63
2.09 2.06 -4.53 -4.57 -0.51 -0.41 -6.09 -6.13 -6.12 -6.65
2.11 2.1 -4.38 -3.16 -0.56 -0.95 -5.68 -6.79 -6.48 -6.63
2.11 2.06 -4.45 -3.86 -0.66 -0.59 -5.95 -5.07 -5.17 -5.34
2.05 2.07 -3.54 -4.31 -0.61 -0.29 -6.93 -6.88 -6.1 -6.71
1.38 1.4 -1.08 -0.77 -0.08 0.01 -0.93 -1.35 -1.25 -1.33
2.07 2.17 -4.71 -6.03 -0.74 -0.6 - - -8.61 -
2.0 2.06 -7.62 -6.45 -0.18 -0.13 - - - -
1.96 2.04 -3.11 -1.84 -0.83 -0.96 -2.39 -3.22 -3.57 -3.05
1.76 1.81 -1.37 -2.0 -0.03 -0.04 -2.4 -2.92 -3.66 -2.92
1.55 1.52 -1.1 -1.74 -0.13 0.19 -1.43 -1.37 -1.54 -1.75
2.06 2.07 -4.08 - -0.42 -0.25 - - - -
2.14 2.13 -5.99 - -0.66 -0.83 - - -6.6 -
2.07 2.07 -4.02 -3.5 -0.73 -0.81 -3.79 -3.48 -3.59 -4.54
2.07 2.0 -4.96 -4.12 -0.35 -0.25 -5.69 -5.78 -5.42 -6.12
1.87 2.06 -2.77 -2.83 -0.52 -0.1 -3.57 -4.04 -4.33 -4.36
1.7 1.8 -2.98 -2.12 0.05 -0.15 -2.12 -1.85 -2.26 -1.93
1.69 1.67 -1.0 -1.19 -0.36 -0.18 -2.11 -1.98 -2.07 -1.93
1.63 1.64 -1.03 -1.19 -0.01 -0.27 -2.94 -1.78 -1.72 -1.61
1.84 1.85 -1.58 -1.85 -0.98 0.04 -2.09 -3.06 -2.65 -2.74
1.91 1.97 -4.13 -1.93 -0.42 -0.3 -2.53 -3.19 -3.91 -3.72
1.75 1.79 -1.1 -0.96 -0.56 -0.33 -3.25 -2.42 -2.37 -2.12
1.83 1.93 -3.26 -2.47 -0.06 -0.08 -2.63 -3.15 -3.68 -3.37
1.98 2.01 -2.93 -2.11 -0.53 -0.66 -2.9 -4.13 -3.65 -3.46
1.92 1.98 -2.27 -3.54 -0.61 -0.06 -3.86 -3.27 -3.83 -2.95
2.11 2.21 - -6.59 -1.01 -0.88 - -7.49 - -
2.12 2.08 -4.85 -3.62 -1.02 -0.83 -4.3 -3.43 -3.68 -4.31
1.88 2.07 -4.66 -4.06 -0.11 0.12 - - -8.77 -
1.97 2.07 -3.22 -2.73 -0.61 -0.66 -2.91 -3.79 -3.76 -3.94
1.57 1.59 -1.16 -1.09 0.05 0.06 -1.75 -2.05 -1.86 -2.08
1.88 1.88 -2.63 -2.32 -0.21 -0.23 -2.76 -2.93 -2.98 -2.66
1.77 1.93 -2.04 -1.24 -0.3 -0.18 -2.65 -3.72 -3.64 -3.59
1.94 1.98 -3.38 -2.87 -0.36 -0.27 -2.87 -3.66 -3.64 -3.76
2.05 2.0 -2.97 -2.49 -0.64 -0.82 -3.47 -3.6 -3.42 -3.7
1.94 1.97 -3.69 -3.08 -0.58 -0.24 -1.97 -3.26 -3.15 -3.98
1.96 1.92 -2.2 -2.07 -0.52 -0.33 -3.43 -3.38 -3.15 -3.52
1.67 1.74 -1.27 -1.07 -0.26 -0.51 -1.84 -2.22 -2.54 -1.39
2.05 2.13 -5.3 -4.38 -0.74 -0.74 -4.0 -4.1 -4.13 -4.37
2.03 2.08 -4.69 -2.6 -0.42 -0.52 -7.82 -5.67 -6.72 -6.84
2.08 2.1 -4.24 -2.73 -0.79 -0.78 -4.98 -4.86 -5.15 -5.16
1.75 1.69 -2.12 -1.23 -0.32 -0.24 -1.8 -1.83 -1.73 -2.1
2.04 2.06 -4.94 -3.73 -0.31 -0.53 -4.69 -4.99 -4.89 -5.47
1.97 1.92 -3.13 -2.42 -0.32 -0.27 -3.06 -3.46 -3.46 -3.91
1.73 1.7 -1.08 -1.74 -0.27 -0.67 -1.82 -1.5 -1.66 -1.93
1.99 1.97 -4.12 -3.06 -0.35 -0.23 -3.12 -3.77 -3.9 -4.34
1.92 2.0 -1.57 -1.53 -0.79 -0.8 -2.85 -3.36 -3.67 -3.95
1.83 1.75 -1.97 -1.95 -0.14 0.01 -3.08 -2.34 -3.02 -2.24
1.95 2.08 -2.26 -2.2 -0.83 -0.72 -3.48 -3.7 -4.05 -3.65
1.81 2.06 -3.05 -2.84 -0.82 -0.16 -2.72 -2.49 -2.45 -3.17
1.87 1.83 -2.06 -1.9 -0.25 -0.03 -3.62 -2.88 -3.01 -2.9
2.09 2.16 - - -0.35 -1.05 - - - -
1.75 1.57 -1.14 -1.41 -0.0 -0.01 -3.02 -1.99 -1.93 -2.23
1.77 1.95 -2.75 -3.07 -0.4 -0.22 -1.73 -2.15 -2.31 -3.02
2.05 1.92 -5.14 -4.48 -0.08 -0.12 -6.19 -6.24 -6.64 -3.04
1.81 1.86 -3.36 -2.78 -0.08 0.02 -2.24 -2.57 -2.69 -2.97
2.06 2.04 -4.73 -4.04 -0.61 -0.36 -4.34 -4.52 -4.24 -4.79
1.86 1.82 -2.31 -2.12 -0.25 -0.22 -2.1 -2.56 -2.47 -2.83
2.07 1.96 -3.0 -2.99 -0.54 -0.64 -3.49 -3.8 -3.57 -4.03
1.88 1.88 -2.25 -2.6 -0.34 -0.8 -1.45 -2.21 -2.43 -2.87
2.05 2.18 -5.21 -3.87 -0.62 -0.85 -6.55 -6.95 -7.13 -6.44
2.01 2.0 -3.73 -2.99 -0.33 -0.41 -3.99 -4.59 -4.11 -4.26
1.97 2.08 -2.85 -2.78 -1.0 -0.77 -2.98 -2.97 -2.79 -3.35
1.86 1.83 -2.69 -1.97 -0.34 -0.58 -1.55 -2.4 -1.96 -2.74
1.54 1.61 -1.49 -1.0 -0.13 -0.19 -1.42 -1.6 -1.53 -1.61
1.95 2.08 -4.24 -3.39 -0.67 -0.25 -3.69 -3.57 -3.68 -4.25
1.92 1.93 -2.16 -2.4 -0.32 -0.28 -3.53 -3.47 -3.66 -3.19
2.1 2.16 - -4.39 -0.78 -0.82 - -5.42 - -5.96
1.68 1.53 -1.35 -0.91 0.1 -0.04 -2.16 -2.16 -2.17 -1.85
1.5 1.48 -1.46 -1.58 -0.15 -0.03 -1.0 -1.25 -1.1 -1.3
1.53 1.88 -2.64 -1.21 -0.64 -0.44 -1.36 -1.43 -1.48 -1.54
1.89 2.02 -5.21 -4.01 0.0 0.15 -7.67 -5.72 -6.12 -7.03
1.52 1.65 -1.35 -1.44 -0.49 -0.22 -0.92 -1.26 -1.29 -1.68
1.99 2.05 -3.29 - -0.63 0.18 - - - -
2.06 2.02 -2.97 -2.46 -0.87 -0.67 -3.23 -3.69 -4.55 -3.76
1.83 1.97 -2.63 -1.23 -0.75 -0.58 -1.91 -3.0 -2.8 -2.93
1.9 1.81 -2.78 -2.12 -0.2 -0.1 -2.11 -3.2 -2.96 -3.21
1.85 2.01 -2.71 -2.95 -0.55 -0.45 -2.59 -2.39 -2.35 -3.18
1.84 1.89 -3.43 -2.47 -0.41 -0.52 -1.47 -2.14 -2.05 -2.47
1.75 2.19 -2.97 -3.23 -0.9 -0.32 -2.99 -3.25 -1.85 -
1.74 1.75 -1.64 -1.71 -0.01 -0.22 -2.35 -2.26 -2.26 -2.25
1.83 1.82 -1.99 -2.43 0.13 -0.05 -3.9 -3.04 -2.94 -3.26
1.99 1.85 -5.01 -2.92 -0.12 -0.04 -4.23 -3.09 -3.8 -3.07
1.98 1.94 -4.38 -3.4 -0.32 -0.06 -3.61 -3.48 -3.58 -3.8
1.71 1.94 -2.03 -2.51 0.13 -0.14 -3.69 -3.09 -4.37 -2.1
1.91 1.9 -2.1 -4.11 -0.36 0.33 - -3.57 -3.74 -5.67
1.4 1.42 -1.32 -1.03 -0.11 -0.49 -0.67 -0.91 -0.9 -1.12
1.77 1.87 -1.56 -1.32 -0.2 -0.13 -2.9 -3.42 -3.71 -3.06
1.89 1.97 -4.55 -2.26 -0.16 -0.07 -4.61 -3.32 -3.34 -5.31
1.66 1.8 -1.68 -1.81 -0.3 0.15 -2.49 -2.19 -1.84 -2.52
1.99 1.91 -4.4 -3.23 -0.23 0.01 -3.31 -4.57 -4.25 -4.56
1.59 1.59 -2.42 -1.56 0.12 -0.2 -1.32 -1.41 -1.41 -1.48
2.08 2.09 -3.62 -3.58 -0.75 -0.88 -4.22 -3.92 -4.12 -5.07
1.89 1.83 -1.97 -2.12 -0.15 -0.23 -3.1 -2.39 -3.12 -3.42
1.83 1.75 -2.43 -2.27 -0.25 -0.09 -1.67 -2.22 -2.4 -2.44
1.68 1.79 -1.62 -0.98 -0.46 -0.64 -1.95 -1.98 -1.83 -1.56
1.69 1.6 -1.32 -1.45 -0.37 -0.44 -1.26 -1.47 -1.54 -1.53
1.85 1.85 -1.93 -2.37 -0.23 0.11 -3.22 -3.32 -3.33 -3.56
1.46 1.53 -1.74 -0.92 0.16 0.02 -1.81 -1.65 -1.78 -0.98
1.98 1.98 -3.74 -2.97 -0.41 -0.23 -3.84 -3.66 -3.51 -4.06
1.68 1.71 -2.7 -1.67 -0.07 -0.71 -1.89 -1.45 -1.39 -1.13
2.12 2.11 -5.79 -4.82 -0.64 -0.66 -7.65 -9.5 -9.94 -10.28
1.89 2.0 -2.99 -2.65 -0.37 -0.12 -4.01 -3.34 -3.98 -3.4
2.06 2.0 -3.67 -3.98 -0.37 -0.37 -4.36 -4.94 -5.67 -5.34
1.96 1.87 -2.2 -1.15 -0.63 -0.41 -3.3 -3.5 -3.2 -3.46
1.31 1.41 -0.85 -1.0 0.06 -0.03 -1.06 -1.12 -1.23 -1.24
2.01 1.91 -1.81 -2.51 -0.76 -0.74 -3.17 -2.64 -2.67 -2.88
1.5 1.62 -1.06 -1.35 -0.55 -0.21 -1.56 -1.08 -1.36 -1.11
1.77 1.8 -2.26 -1.54 -0.27 -0.2 -2.31 -2.25 -2.18 -2.19
1.73 1.7 -1.94 -1.72 -0.55 -0.04 -1.3 -1.51 -1.94 -2.41
1.92 1.9 -2.35 -1.89 -0.31 -0.37 -3.52 -3.21 -3.04 -3.11
1.83 1.84 -2.1 -1.87 -0.48 -0.35 -1.96 -2.3 -2.59 -2.2
2.17 2.11 - - -0.69 -0.88 - -5.56 - -
1.93 2.02 -5.07 -4.87 -0.16 0.07 -5.61 -4.93 -5.05 -5.18
2.04 1.93 -4.62 -4.37 -0.03 0.01 -8.9 -8.75 - -
1.68 1.82 -2.65 -1.84 0.07 -0.26 -2.65 -1.98 -1.91 -2.05
1.66 1.57 -0.95 -1.62 0.01 0.11 -2.35 -1.97 -1.91 -2.09
1.85 1.98 -3.42 -2.3 -0.42 -0.25 -2.63 -2.88 -2.61 -3.21
1.92 1.99 -3.36 -2.69 -0.21 -0.22 -4.33 -4.09 -3.18 -4.32
1.82 1.97 -4.8 -3.38 -0.08 0.07 -3.34 -3.15 -3.04 -3.57
1.47 1.4 -1.01 -0.74 -0.02 -0.11 -1.15 -1.45 -1.37 -1.45
1.74 1.64 -0.97 -1.05 -0.05 -0.08 -4.68 -2.93 -2.12 -2.1
1.73 1.65 -1.14 -1.1 -0.21 0.04 -2.76 -2.36 -2.47 -2.33
1.94 1.98 -3.95 -1.9 -0.41 0.03 -3.7 -7.14 -6.32 -5.66
1.64 1.77 -1.46 -1.05 -0.24 -0.46 -1.81 -1.88 -2.03 -2.02
1.75 1.87 -2.23 -2.54 -0.08 -0.02 -2.82 -2.39 -2.41 -2.71
1.45 1.66 -1.5 -1.08 -0.25 -0.41 -0.99 -1.33 -1.3 -1.39
1.67 1.78 -0.89 -1.26 -0.48 -0.55 -1.67 -1.73 -2.06 -2.46
1.73 1.79 -2.52 -2.06 -0.27 -0.37 -1.82 -1.63 -1.68 -1.8
1.45 1.46 -0.76 -0.95 0.25 -0.09 -1.58 -1.79 -1.45 -1.77
2.01 2.17 -5.72 -4.15 -0.58 -0.58 - -5.56 -5.75 -5.68
2.08 2.02 -5.85 -4.76 -0.32 -0.24 -7.79 -9.37 -9.46 -10.11
2.12 2.15 -5.16 -4.47 -1.18 -0.77 -4.39 -5.65 -4.84 -5.77
2.11 2.12 -7.92 - -0.67 -0.54 -5.08 - - -
2.04 1.94 -4.14 -2.03 -0.72 -0.24 -4.91 -3.36 -3.85 -3.47
1.88 1.87 -3.29 -1.43 -0.62 -0.36 -2.14 -2.22 -2.9 -2.48
1.9 1.87 -2.12 -1.37 -0.68 -0.81 -1.96 -2.55 -2.15 -2.72
1.5 1.64 -0.85 -0.72 -0.38 -0.32 -1.76 -1.57 -1.78 -1.27
1.96 1.88 -5.37 -4.62 0.19 0.14 -7.02 -6.28 -3.65 -6.81
1.87 1.94 -3.0 -3.13 -0.06 0.24 - -4.15 -4.65 -5.98
1.97 2.18 - - -0.51 -0.25 - - - -
2.07 2.06 -3.31 -2.9 -0.77 -0.61 -4.75 -5.09 -4.76 -4.54
1.93 1.93 -3.72 -3.56 -0.22 -0.29 -2.83 -2.95 -2.56 -3.14
2.13 2.09 -4.38 -3.62 -0.44 -1.08 - -5.39 - -
1.76 1.81 -3.09 -1.13 -0.6 -0.33 -2.07 -1.83 -1.49 -2.41
2.04 1.96 -4.21 -3.86 -0.38 -0.1 -4.19 -4.74 -4.78 -5.36
1.97 2.05 -4.03 -6.32 -0.8 -0.53 -2.62 -2.57 -3.13 -2.86
2.08 2.14 - - -0.56 -0.58 - -7.44 -7.62 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.