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Heatmap: Cluster_150 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
2.42 2.06 -3.13 - -3.18 -2.0 - - - -
2.48 1.96 -5.09 - -2.21 -1.74 - - - -
2.53 2.09 - - - - - - - -
2.35 1.82 - - -0.37 -0.75 - - - -
2.41 2.0 - - -2.65 -2.04 -1.77 - - -
2.21 2.13 -7.88 -7.13 -0.85 -1.15 -10.51 -11.39 - -10.86
2.22 2.09 - -7.03 -0.8 -1.06 -7.31 - -8.59 -10.66
2.18 2.12 - -9.48 -0.66 -1.09 - - - -
2.08 1.83 -2.06 -2.25 -0.99 -1.53 -1.62 -2.09 -1.93 -3.39
2.36 2.05 -2.95 -3.59 -2.87 -2.8 -5.36 -3.25 -3.85 -4.4
2.2 2.05 -5.59 -6.63 -0.78 -0.64 -7.32 -8.58 -8.68 -7.91
2.2 2.1 -9.52 -9.39 -1.2 -0.54 - -12.57 -13.49 -12.84
2.06 2.07 -2.63 -2.96 -0.92 -0.82 -3.32 -4.54 -4.35 -4.4
2.66 1.87 - - - - - - - -
2.65 1.9 - - - - - - - -
1.94 1.63 -2.04 -1.67 -1.47 -0.88 -1.36 -0.94 -1.72 -1.36
2.38 1.89 -3.04 - -2.96 -3.34 - -0.9 -3.08 -3.43
2.46 1.92 -0.53 - - - - - - -
1.93 1.72 -3.17 -1.74 -0.98 -0.58 -1.1 -1.6 -1.5 -2.75
2.33 1.98 -4.57 - -1.51 -1.0 - - -3.34 -5.25
2.62 1.83 -7.32 -5.16 -7.26 - -3.19 -5.21 - -3.41
2.68 1.65 - - -2.57 -2.12 -4.4 - - -
2.42 1.91 - -0.69 - -2.35 - - - -4.02
2.63 1.83 - - - -1.93 - - - -
2.43 1.84 - -1.66 -1.83 -1.22 - - - -
2.79 1.62 - - - - - - - -
1.83 1.64 -1.14 -1.39 -0.22 -0.22 -2.31 -2.35 -2.53 -2.25
2.43 1.94 - - - -4.36 -1.58 -1.82 -3.7 -4.72
2.67 1.82 - - -4.28 -4.07 -7.54 - -9.47 -
2.22 2.13 -4.93 -5.02 -1.27 -1.12 - - -6.65 -
2.68 1.6 -4.32 - -2.27 -1.59 - - - -
2.15 2.1 -6.8 -5.51 -0.41 -1.05 - - - -
2.73 1.76 - - - - - - - -
2.56 1.74 - - - -2.57 - -1.63 -2.39 -3.72
2.65 1.9 - - - - - - - -
1.67 1.4 -0.81 -1.0 -0.12 -0.13 -1.71 -1.74 -1.51 -1.59
2.52 1.92 -5.24 -4.06 -3.48 -4.92 -3.12 -4.41 -4.15 -4.35
2.78 1.66 - - - - - - - -
1.97 2.02 -1.64 -1.83 -0.88 -1.22 -3.19 -3.44 -3.04 -2.98
2.39 2.03 -6.51 -5.64 -1.64 -1.67 -6.6 -6.72 -6.89 -10.54
2.55 2.06 - - - - - - - -
2.22 1.85 -3.89 -3.15 -1.34 -0.93 -2.3 -2.73 -3.91 -2.26
1.8 1.63 -1.44 -1.71 -0.48 -0.57 -1.46 -1.61 -1.57 -1.6
2.31 1.75 -4.79 -1.95 -0.55 -0.85 -3.34 -5.18 -6.59 -6.52
2.42 1.91 -3.24 -3.07 -1.59 -1.98 - - -3.31 -
2.68 1.85 - - - - -7.58 -11.02 -11.19 -9.95
2.34 1.82 -1.79 -1.0 -2.92 -1.02 - - - -
2.46 2.11 - - - -3.66 - -3.29 - -
2.55 2.02 - - - - - -3.27 - -
2.18 2.07 -6.68 -6.55 -0.53 -0.89 -6.04 -11.38 -9.39 -9.13

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.