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Heatmap: Cluster_34 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
9.3 7.97 0.65 0.26 4.66 4.81 1.13 1.19 0.28 0.39
11.09 11.89 1.28 1.46 10.1 13.81 1.99 2.55 2.13 1.12
16.12 16.58 3.04 1.96 10.51 13.83 0.37 0.74 0.58 0.64
27.75 25.3 2.1 3.5 13.53 14.76 1.92 1.35 1.63 1.43
120.89 121.2 1.95 2.13 72.92 87.47 0.0 0.32 0.0 0.11
15.58 14.06 3.46 4.73 14.27 17.18 1.88 1.28 1.45 1.91
24.74 25.7 0.49 0.05 15.39 14.75 0.27 0.35 0.4 0.21
40.63 35.53 1.69 0.83 21.6 25.97 0.31 0.11 0.05 0.08
242.58 246.08 3.44 5.7 219.64 298.34 0.13 0.29 0.06 0.0
66.96 66.02 5.91 4.88 33.04 42.0 3.23 2.88 2.17 2.1
11.45 13.75 1.7 0.86 8.34 12.13 0.91 0.34 0.54 0.38
41.67 43.88 1.72 3.15 38.92 50.84 1.97 2.02 2.16 1.15
78.56 76.75 1.62 3.0 32.39 55.6 1.72 2.87 2.65 2.19
20.48 20.0 0.61 0.7 12.7 19.78 0.19 0.21 0.19 0.0
71.11 70.53 9.26 5.73 38.37 49.12 4.37 6.84 6.66 5.44
33.5 31.06 9.23 6.09 22.15 22.49 4.2 5.41 4.81 4.62
16.04 15.15 0.35 1.05 10.75 12.47 0.21 0.12 0.36 0.2
48.64 51.39 2.93 4.31 29.85 33.0 2.16 2.76 2.62 1.78
39.3 38.6 3.42 6.09 20.98 29.43 1.34 0.79 1.01 1.04
546.09 528.34 10.44 13.16 418.96 581.01 19.93 12.37 18.67 2.13
17.16 19.18 2.34 2.58 9.41 14.48 0.0 0.07 0.1 0.13
594.1 610.1 11.17 10.68 333.34 438.63 5.04 2.03 2.17 0.68
33.11 34.58 0.33 0.72 25.82 38.86 0.0 0.0 0.0 0.0
7.07 9.05 0.5 0.15 3.31 5.13 0.97 0.61 0.57 0.17
23.35 22.96 2.42 3.63 11.07 14.39 0.61 0.53 0.7 1.0
1556.93 1588.57 8.0 33.44 672.05 810.26 3.57 2.47 0.58 0.19
29.32 28.83 1.74 1.57 13.49 21.49 0.2 0.32 0.19 0.69
69.93 68.62 23.42 6.31 43.41 54.43 10.37 9.23 10.01 9.54
137.09 130.51 28.77 23.71 121.39 137.81 14.18 17.19 15.87 21.35
33.49 34.25 1.05 1.85 32.13 38.28 0.42 0.24 0.12 0.03
23.45 21.24 4.56 3.23 20.2 21.09 3.99 4.19 3.46 3.51
149.7 177.15 23.3 14.89 98.33 129.12 6.56 9.67 6.63 8.5
94.18 94.23 10.47 17.64 44.34 53.08 15.45 6.97 9.88 6.27
21.5 23.93 4.38 5.62 13.89 23.02 1.43 1.45 1.74 1.6
85.77 80.7 4.06 5.0 77.42 79.9 1.34 0.25 0.44 0.38
107.68 110.28 6.82 4.82 56.61 60.95 2.64 1.82 2.26 1.28
70.18 67.27 6.96 5.03 44.4 52.25 3.69 4.53 5.67 4.36
178.64 161.2 0.0 0.35 71.74 97.39 0.0 0.0 0.0 0.0
33.85 31.92 0.51 0.0 15.28 17.04 0.0 0.05 0.0 0.0
1149.26 1171.15 17.82 34.6 499.23 597.08 1.26 0.89 0.09 0.63
168.87 159.48 0.99 3.85 66.89 84.93 0.07 0.32 0.18 0.34
45.73 39.54 5.19 5.76 23.06 30.75 1.7 1.42 2.25 1.77
2.0 2.87 0.0 0.0 1.88 2.54 0.0 0.08 0.07 0.06
61.22 38.76 0.73 1.88 38.41 40.14 1.11 1.05 1.52 1.39
28.7 33.68 5.56 4.0 16.14 17.52 5.61 6.47 5.16 5.48
83.47 73.11 1.09 2.99 39.51 54.9 0.39 0.11 0.06 0.05
21.65 22.72 4.77 2.54 18.24 23.16 0.0 0.29 0.46 0.67
6.09 7.26 0.07 0.1 3.3 5.01 0.0 0.0 0.03 0.04
491.54 497.17 9.87 12.67 305.87 274.06 1.66 0.76 0.64 0.22
1967.53 1843.71 28.24 62.51 1783.83 1925.11 9.17 3.68 2.44 3.1
315.3 293.84 4.88 7.07 131.32 156.21 0.94 0.32 0.31 0.24
55.1 64.41 2.0 2.83 36.89 42.64 1.5 0.41 0.06 0.1
33.23 34.34 2.12 3.18 11.19 16.27 1.86 2.22 1.73 2.07
26.35 22.73 0.43 0.15 9.53 14.17 0.73 0.99 0.75 0.28
1.65 2.09 0.2 0.29 1.37 2.13 0.16 0.18 0.26 0.12
242.52 247.85 0.64 4.26 106.21 130.47 0.55 1.36 0.6 3.45
471.86 475.52 28.43 35.81 212.71 253.09 16.87 18.19 18.08 18.44
36.26 37.09 13.97 13.13 26.77 25.72 7.56 8.38 8.81 9.5
780.06 768.87 12.93 26.28 401.85 474.27 7.2 6.17 4.05 4.17
41.15 48.62 4.37 5.06 27.51 25.23 5.99 4.16 4.2 2.88
119.26 114.22 3.78 8.62 84.45 96.33 0.45 0.0 0.07 0.09
127.46 158.08 16.02 8.81 92.46 132.76 7.61 5.48 5.62 7.3
11.52 13.52 2.42 3.12 7.9 9.82 3.33 2.92 2.87 3.47
72.56 77.89 6.75 1.1 38.2 47.13 2.38 3.15 1.57 4.34
47.77 49.67 8.6 12.34 23.18 23.82 4.42 6.93 6.58 5.7
110.79 110.52 2.55 4.29 61.06 72.77 0.73 0.46 0.51 0.36
348.25 293.55 0.0 0.0 162.06 247.12 0.0 0.0 0.0 0.0
24.69 19.53 1.9 1.55 12.95 19.55 1.76 3.62 2.55 3.06
155.5 156.46 23.29 17.21 66.95 89.53 16.64 12.97 13.05 9.68
3.36 3.22 0.1 0.97 2.06 2.63 0.09 0.24 0.28 0.65
161.76 169.24 9.6 10.56 117.49 190.76 8.19 4.79 6.84 4.52
40.06 37.77 3.09 4.48 20.85 32.58 0.87 0.72 0.75 0.76
3.23 4.1 0.29 0.64 2.52 3.34 0.18 0.46 0.28 0.22
15.67 14.14 3.02 5.88 15.23 13.83 3.29 2.6 2.69 2.36
47.05 39.8 9.63 11.48 25.59 34.3 6.51 6.42 5.99 4.36
6.8 5.4 0.33 0.08 2.82 2.85 0.0 0.0 0.1 0.0
46.17 50.84 1.08 1.75 18.78 27.78 0.0 0.0 0.0 0.05
196.84 205.34 52.88 47.15 107.77 123.42 31.37 34.91 37.23 31.2
96.22 98.81 6.5 9.67 51.22 63.79 14.99 14.31 12.95 15.78
26.05 27.97 2.29 1.14 16.75 20.29 0.0 0.28 0.44 0.24
382.27 343.65 37.04 45.24 272.68 277.09 32.78 28.46 34.13 27.43
61.86 65.22 1.03 0.49 29.63 44.16 0.0 0.0 0.05 0.0
136.62 138.47 10.74 14.6 92.48 82.81 9.21 9.25 9.6 7.87
41.88 47.45 9.78 10.6 23.76 26.39 3.55 5.58 3.98 7.3
66.79 62.87 8.2 10.58 40.19 49.13 3.38 4.64 3.37 4.16
179.96 210.45 3.49 3.56 90.2 124.45 0.0 0.35 0.12 0.0
72.56 77.02 0.24 1.68 29.74 56.9 0.0 0.0 0.0 0.0
100.48 93.17 9.58 12.79 48.91 63.0 7.51 7.5 4.42 4.79
3.85 4.1 0.62 0.35 2.79 2.78 0.0 0.31 0.33 0.48
87.93 82.23 3.6 3.3 35.07 58.23 0.4 0.37 0.53 0.37
2.79 2.75 0.12 0.16 1.33 1.73 0.0 0.07 0.13 0.06
37.98 40.41 5.83 11.24 23.81 29.65 5.7 5.09 4.09 4.34
97.06 94.03 11.55 13.52 54.53 54.6 13.76 13.4 13.11 9.76
17.08 16.25 1.38 0.36 13.05 18.53 2.1 2.45 1.8 0.58
44.27 40.27 6.08 12.19 26.74 28.65 9.92 5.43 4.64 8.62
49.52 72.81 5.17 6.76 38.43 56.63 9.06 9.17 10.98 7.88
462.24 439.19 2.31 1.71 279.65 374.53 0.78 0.29 0.26 0.05
87.48 90.94 4.38 4.19 39.31 46.87 1.79 2.28 1.92 2.6
44.7 46.57 0.12 2.18 30.48 36.47 0.0 0.64 1.09 1.51
62.99 74.92 2.02 2.29 44.76 60.11 0.0 0.0 0.0 0.0
500.0 505.9 24.99 30.09 199.72 262.06 21.38 16.01 16.21 14.91
251.64 219.63 12.06 16.47 227.23 279.66 0.82 0.37 0.51 0.09
29.53 28.01 5.62 9.51 19.82 22.49 4.33 3.5 3.17 5.78
55.53 50.16 7.97 19.87 42.98 50.47 5.76 10.08 8.19 10.39
12.76 16.1 3.09 2.7 7.12 8.0 0.59 1.64 1.45 1.34
99.58 100.51 9.95 10.26 63.96 115.1 11.46 7.08 9.07 5.89
15.41 15.27 1.74 2.59 8.47 11.49 0.0 0.17 0.05 0.04
81.47 77.03 3.93 12.1 53.31 72.17 0.52 1.07 0.57 2.85
89.95 81.94 19.72 15.72 52.83 59.01 6.91 6.07 5.18 5.56
79.79 80.21 10.8 19.53 60.43 78.08 9.74 4.76 5.75 3.2
83.51 81.2 1.85 1.34 62.92 82.94 0.64 0.18 0.24 0.25
1857.17 1889.0 39.34 46.08 1411.04 1727.95 1.7 0.51 0.15 0.36
22.27 22.57 4.43 4.65 12.93 17.26 2.08 3.01 2.21 2.06
16.87 17.37 2.83 4.18 10.76 12.02 2.97 2.11 2.84 2.64
57.18 58.27 9.54 13.47 29.74 38.02 14.77 12.45 14.14 12.14
66.27 73.62 1.69 1.07 42.38 49.66 0.34 1.05 0.33 0.78
56.74 47.26 5.64 3.78 36.02 41.22 0.65 0.88 0.69 1.01
29.44 27.86 2.42 4.99 13.49 18.13 0.85 0.61 0.67 0.53
2290.25 2172.96 9.67 32.73 1406.55 1411.02 3.0 0.59 0.36 0.03
691.26 700.31 12.05 21.09 432.21 556.23 1.7 0.94 1.06 0.72
6.1 6.48 0.31 0.34 2.95 4.02 0.0 0.07 0.13 0.05
28.53 30.99 5.67 9.72 16.23 19.82 7.24 7.08 6.32 6.68
11.52 11.55 2.19 4.09 10.66 11.86 2.58 2.42 2.25 2.42
5.22 5.03 0.25 0.76 4.4 4.83 0.3 0.17 0.21 0.58
76.34 75.54 3.49 3.81 32.08 45.27 2.41 1.14 1.57 0.53
15.86 16.82 1.54 2.04 14.61 19.99 0.19 0.32 0.14 0.19
23.02 25.08 7.0 1.86 18.82 25.82 1.13 2.15 1.44 1.64
117.96 111.22 1.58 4.65 63.24 74.18 2.89 2.68 2.74 3.38
27.67 25.98 2.32 2.41 13.92 16.19 0.37 0.49 0.6 0.38
22.52 20.26 10.37 8.09 15.32 17.69 10.11 11.29 9.44 9.02
60.13 58.3 15.0 23.56 56.01 53.73 12.09 13.37 11.23 16.52
4.54 5.15 0.02 0.05 2.0 2.17 0.0 0.0 0.0 0.0
122.93 102.34 2.1 4.34 58.19 67.6 1.61 1.26 1.33 1.73
1439.67 1448.74 10.43 9.7 784.51 1007.97 11.87 4.67 3.98 2.44
15.77 17.09 1.25 1.37 12.26 16.94 0.0 0.0 0.02 0.04
123.08 129.95 6.81 4.1 57.55 72.72 2.99 4.75 3.55 1.38
21.48 23.47 6.93 6.99 15.42 14.48 5.6 6.03 6.23 5.55
39.61 40.3 2.35 4.34 35.84 41.59 2.07 0.34 0.41 0.56
10.86 13.56 4.61 2.06 8.8 13.06 1.72 1.0 1.17 0.92
298.3 295.44 11.41 8.76 189.47 202.17 0.38 0.11 0.16 0.07
106.57 97.17 12.45 13.65 61.77 81.25 8.44 12.98 13.89 12.11
66.25 80.96 7.35 10.27 44.14 47.52 8.48 9.35 5.81 3.92
8.46 8.78 0.04 0.62 7.92 6.71 0.63 0.4 0.19 0.09
27.58 24.41 0.26 1.09 14.28 17.57 1.19 0.65 0.59 0.19
156.38 153.56 13.64 29.84 112.44 130.37 11.93 14.56 18.52 14.09
27.99 28.87 0.56 1.55 13.53 14.96 0.78 0.19 0.05 0.3
49.16 53.09 0.51 1.65 42.59 55.59 0.0 0.87 0.49 0.78
86.91 92.4 16.01 14.88 75.95 94.07 7.58 7.54 6.36 5.23
88.81 82.92 1.2 1.94 44.56 56.79 0.0 0.0 0.05 0.04
7.92 7.93 0.0 0.17 5.53 8.44 0.0 0.0 0.11 0.0
7.22 7.21 0.58 1.53 4.21 4.58 0.57 0.96 0.33 0.59
76.01 65.92 0.0 0.0 35.1 39.39 0.0 0.0 0.0 0.0
62.46 68.48 2.76 3.99 61.1 76.15 0.11 0.0 0.0 0.43
74.02 81.72 8.48 8.75 34.79 47.71 5.92 5.36 6.22 5.0
9.23 8.39 0.8 2.72 5.43 6.7 1.39 1.85 1.91 1.58
903.28 923.72 36.16 39.33 652.68 803.77 5.02 5.15 2.51 6.33
2349.45 2180.99 162.75 133.07 2353.49 3037.34 5.86 3.2 2.18 0.59
8.7 8.8 0.0 1.26 7.33 7.44 0.0 0.06 0.4 1.03
79.1 83.06 0.35 1.42 60.09 81.4 0.15 0.99 0.29 0.35
23.75 22.5 1.34 1.76 11.71 13.27 0.54 0.81 0.53 0.44
51.87 54.59 7.12 2.8 23.96 37.64 4.25 6.77 6.54 8.58
51.32 46.79 2.08 3.72 23.01 27.75 0.18 0.2 0.33 0.33
6.16 5.85 0.17 1.29 5.59 8.21 0.1 0.06 0.0 0.0
65.37 70.34 0.63 1.68 50.74 48.13 0.31 0.4 0.41 0.88
23.78 19.79 0.14 0.91 11.47 20.14 2.92 3.14 2.48 2.09
14.02 17.23 1.59 2.46 9.47 9.02 0.88 1.67 0.72 1.77
24.54 21.36 3.87 3.87 16.36 18.43 3.05 3.04 3.36 3.27
33.75 38.18 2.3 2.45 17.54 26.28 0.37 0.24 0.34 0.3
27.77 28.38 3.18 5.22 21.42 28.69 0.44 1.53 1.44 1.39
195.67 198.48 13.43 11.6 86.24 110.44 14.1 13.23 16.67 7.43
22.36 19.24 1.84 5.25 14.77 19.36 2.53 1.56 2.27 1.57
47.8 47.14 6.55 3.57 26.2 33.36 0.93 1.78 2.6 1.63
11.76 13.14 1.95 1.68 6.39 6.93 0.78 1.42 1.12 1.13
14.84 16.2 1.78 2.29 10.6 10.61 1.26 0.82 1.11 0.53
204.29 224.03 3.12 6.23 175.26 276.6 0.11 0.0 0.28 0.04
25.23 25.93 1.21 3.72 21.99 23.33 0.29 0.52 0.28 1.85
15.45 14.88 2.39 4.15 11.54 14.21 1.39 3.09 2.18 3.15
72.04 66.43 0.26 0.42 31.82 39.25 0.0 0.0 0.0 0.0
28.47 27.9 0.62 3.71 17.39 20.94 0.46 0.61 0.62 0.55
65.85 64.88 21.43 23.21 49.92 61.03 29.16 22.66 24.35 21.48
800.12 765.92 10.01 10.75 325.49 439.25 3.4 1.65 0.2 0.48
11.51 11.67 0.14 2.12 7.14 7.95 0.0 1.15 0.6 1.28
59.79 57.71 4.86 2.9 25.86 39.15 8.87 4.57 4.46 1.6
19.67 23.56 0.76 0.7 9.02 12.91 0.0 0.16 0.0 0.0
4.31 3.59 0.0 0.16 2.42 3.04 0.37 0.07 0.18 0.0
104.33 106.85 1.05 4.03 67.23 77.13 0.71 0.42 0.19 0.28
17.5 16.71 0.47 1.7 14.69 17.35 0.0 0.04 0.08 0.34
4.89 4.78 0.61 1.41 2.45 3.38 0.15 0.29 0.29 0.42
7.39 6.12 2.15 1.46 3.74 5.07 0.89 1.47 1.05 1.17
34.82 41.67 1.04 2.1 18.86 37.85 0.0 0.0 0.0 0.0
86.79 83.41 16.78 15.34 64.39 80.53 18.48 16.37 14.04 17.62
16.38 20.04 4.65 3.38 11.76 15.49 2.82 2.08 1.78 1.91

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)