Heatmap: Cluster_141 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g06520.5	0.25	0.24	-1.08	-0.91	0.0	0.27	0.51	0.16	0.01	-0.2
Bradi1g16230.3	-0.68	-1.85	-1.12	-0.7	0.54	0.28	0.46	0.58	0.52	0.06
Bradi1g19830.1	-0.31	-0.34	-0.41	-0.09	0.33	0.22	0.48	0.04	-0.03	-0.17
Bradi1g23560.1	-0.25	-0.19	-0.78	-0.15	0.26	-0.1	0.53	0.16	0.22	-0.08
Bradi1g23600.1	-0.51	-0.36	-0.8	-0.24	0.36	-0.21	0.48	0.29	0.31	0.12
Bradi1g27920.1	-	-	-1.38	0.08	0.77	0.06	1.01	0.74	0.35	-0.23
Bradi1g30060.1	-0.25	-0.07	-0.61	0.03	0.06	0.19	0.5	0.04	0.07	-0.24
Bradi1g34240.1	-1.92	-1.57	-0.78	-1.22	0.06	0.3	1.98	0.06	-0.29	-1.66
Bradi1g37400.1	-	-	0.08	-1.45	0.35	-0.83	1.47	1.14	0.48	-1.41
Bradi1g46190.1	-4.75	-6.91	-1.69	-0.49	0.45	-0.74	1.62	1.06	0.33	-0.87
Bradi1g47850.1	-8.64	-	-2.2	-0.03	0.73	0.53	0.74	0.6	0.32	0.34
Bradi1g54450.1	-	-	-0.3	-0.7	-0.34	0.48	1.9	0.63	-0.13	-2.46
Bradi1g60710.1	-0.08	-0.02	-0.83	-0.28	0.31	-0.1	0.58	0.07	0.13	-0.21
Bradi1g65220.1	0.13	0.22	-0.96	-0.35	0.2	0.16	0.49	-0.26	0.09	-0.19
Bradi1g65310.2	-0.24	-0.16	-0.71	-0.05	0.2	0.01	0.5	0.12	0.15	-0.11
Bradi1g65490.2	0.02	-0.1	-0.64	-0.25	0.09	0.18	0.36	0.1	0.13	-0.1
Bradi1g67380.1	-0.18	-0.24	-0.38	0.1	0.07	0.14	0.33	0.08	0.04	-0.11
Bradi1g78350.1	-1.64	-1.93	-1.49	-0.65	0.39	-0.25	1.07	0.71	0.78	-0.26
Bradi2g02180.4	0.01	0.1	-0.58	-0.54	-0.05	0.17	0.63	0.08	0.08	-0.29
Bradi2g05710.1	-0.07	-0.14	-0.45	0.18	0.18	-0.34	0.37	-0.02	0.19	-0.1
Bradi2g05970.3	-0.17	-0.34	-0.9	-0.02	0.37	-0.2	0.35	-0.08	0.35	0.18
Bradi2g06555.1	-	-	-	-	0.73	-1.66	2.41	-1.25	0.16	0.23
Bradi2g08210.3	-0.13	-0.08	-0.74	0.08	0.31	0.19	0.46	-0.21	0.0	-0.22
Bradi2g10330.1	-	-	-0.79	-1.21	-0.2	-0.8	1.71	0.8	1.05	-1.07
Bradi2g11000.1	-0.16	-0.18	-0.31	0.16	0.19	-0.21	0.31	0.04	0.1	-0.06
Bradi2g14400.1	-0.41	-0.38	-0.45	-0.12	0.28	-0.15	0.36	0.23	0.18	0.16
Bradi2g16570.1	-0.67	-0.74	-1.15	-0.46	0.61	0.43	0.92	0.31	0.21	-1.15
Bradi2g21510.1	-0.34	-0.27	-0.33	-0.4	0.11	0.05	0.5	0.19	0.16	0.06
Bradi2g28170.2	0.15	0.14	-0.93	-0.31	-0.09	0.22	0.64	-0.02	0.03	-0.35
Bradi2g31730.1	-	-	-0.25	-0.54	-0.5	0.33	1.68	0.75	0.27	-1.25
Bradi2g34890.1	-2.07	-1.86	-0.42	-0.43	-0.56	0.11	1.43	0.77	0.46	-1.11
Bradi2g39339.1	-1.43	-1.06	-2.4	0.57	0.79	0.03	0.99	0.29	-0.0	-0.97
Bradi2g39960.1	-0.35	-0.23	-0.37	0.11	0.08	0.05	0.49	0.16	0.13	-0.33
Bradi2g43190.1	0.09	0.06	-0.4	0.17	0.01	0.04	0.31	-0.2	0.05	-0.28
Bradi2g43200.1	-0.37	-0.28	-0.2	-0.05	0.15	0.01	0.33	0.08	0.27	-0.09
Bradi2g49710.4	-0.14	-0.18	-0.64	0.16	0.43	0.05	0.31	-0.15	0.14	-0.29
Bradi2g50170.1	-6.0	-5.57	-0.33	-	0.66	0.9	1.27	0.51	0.83	-3.08
Bradi2g52882.1	-1.57	-2.48	-0.05	-0.63	-0.04	0.3	1.06	0.83	0.27	-0.74
Bradi3g04342.1	-	-	0.27	-0.85	0.16	-0.58	1.78	0.92	0.17	-
Bradi3g09310.2	-5.32	-5.34	-0.09	-1.06	-0.53	0.08	1.49	1.0	0.41	-0.65
Bradi3g22023.1	-3.45	-3.57	-3.32	-1.55	-0.5	0.24	1.99	0.88	-0.06	-0.47
Bradi3g24730.1	-0.21	-0.17	-0.26	0.2	0.24	0.09	0.19	-0.01	-0.01	-0.16
Bradi3g27460.1	-	-	-1.22	-1.78	0.09	-0.01	1.68	0.55	0.87	-0.46
Bradi3g27470.1	-	-	-0.71	-0.98	0.72	0.2	1.36	0.15	0.82	-0.61
Bradi3g28820.1	-0.29	-0.23	-0.75	-0.56	0.31	0.19	0.54	0.17	0.28	-0.18
Bradi3g34360.1	-0.46	-0.37	-0.34	-0.01	0.22	0.04	0.36	0.26	0.06	-0.01
Bradi3g35733.1	-0.47	-0.4	-0.15	0.2	0.37	0.11	0.16	0.02	-0.11	0.05
Bradi3g40855.3	-2.6	-2.44	0.0	-0.49	0.15	-0.3	1.08	0.6	0.48	0.0
Bradi3g43020.1	-0.78	-0.61	-0.44	-0.69	0.47	-0.14	0.48	0.55	0.16	0.19
Bradi3g44410.1	-0.21	-0.24	-0.42	-0.33	0.47	0.04	0.4	0.02	0.07	-0.08
Bradi3g51290.1	-1.46	-0.87	-3.27	-0.13	0.54	-0.27	0.8	0.57	0.65	-0.03
Bradi3g56210.1	-	-	-0.73	-1.47	0.64	0.18	1.31	0.83	0.49	-0.56
Bradi3g60710.1	-0.35	-0.37	-0.88	0.1	-0.0	0.24	0.66	0.25	0.28	-0.58
Bradi4g09701.1	-	-	-1.13	-5.01	-0.01	0.4	1.63	0.79	0.86	-0.86
Bradi4g09711.1	-	-	-1.32	-	0.18	-0.13	1.92	0.58	0.82	-0.98
Bradi4g09880.1	-	-	-5.18	-3.98	1.28	0.17	1.64	0.45	0.91	-
Bradi4g25445.1	-1.78	-1.36	-1.23	-1.04	-0.27	-0.67	1.89	0.52	0.12	-0.48
Bradi4g25826.1	0.28	0.48	-	-3.99	0.53	0.33	1.49	0.15	-0.5	-16.4
Bradi4g28660.2	-0.0	0.02	-0.67	-0.06	0.19	-0.33	0.5	0.01	0.2	-0.16
Bradi4g30533.2	-0.38	-1.17	-1.01	-0.3	0.26	-0.42	1.04	-0.04	0.71	-0.2
Bradi4g34163.1	-0.79	-0.83	-0.43	0.23	-0.01	-0.06	0.73	0.18	0.35	-0.13
Bradi4g38600.3	-0.21	-0.09	-0.67	-0.04	0.3	0.03	0.58	-0.0	0.13	-0.38
Bradi4g39600.1	-0.06	-0.16	-0.82	-0.11	0.35	0.13	0.48	-0.03	0.05	-0.18
Bradi4g43121.1	-1.91	-1.73	-0.45	-1.02	-0.28	-0.68	1.62	0.63	0.53	-0.54
Bradi4g44205.1	-0.43	-0.46	-0.42	-0.41	0.13	0.12	0.51	0.28	0.4	-0.16
Bradi4g44920.1	-0.28	-0.15	-0.55	-0.39	0.25	0.11	0.53	0.13	0.21	-0.21
Bradi5g03290.3	-2.85	-3.02	0.13	-0.71	-2.4	0.68	1.5	1.35	-0.21	-
Bradi5g04550.1	0.01	0.03	-0.58	-0.47	0.4	0.09	0.37	-0.05	0.16	-0.29
Bradi5g08210.1	-0.05	0.05	-0.49	-0.32	-0.05	0.27	0.5	-0.1	0.09	-0.15
Bradi5g08390.1	-0.31	-0.34	-0.51	-0.02	0.39	-0.06	0.28	0.14	0.19	-0.03
Bradi5g08471.1	-2.82	-	0.64	-0.32	0.16	0.49	2.03	-1.1	-2.5	-1.93
Bradi5g10390.1	-0.42	-0.34	-0.54	-0.11	0.48	0.07	0.53	0.09	0.07	-0.25
Bradi5g12825.1	-	-	-1.87	-0.22	-0.05	0.27	1.47	0.84	0.57	-0.61
Bradi5g24960.1	-0.14	-0.13	-0.08	0.01	0.07	0.05	0.24	0.01	-0.01	-0.05

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.