Heatmap: Cluster_59 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g06740.1	-	-	-	-	-	-	1.73	1.56	1.51	-0.17
Bradi1g18630.1	-8.03	-	-3.59	-1.85	-4.88	-3.71	1.89	1.46	1.11	-0.14
Bradi1g18990.2	-5.05	-3.95	-1.84	-1.53	-2.88	-2.63	1.76	1.23	1.0	0.3
Bradi1g19750.2	-2.45	-2.66	-0.71	-2.28	-1.93	-1.15	1.52	1.28	0.96	-0.17
Bradi1g20106.1	-	-	-3.29	-	-	-3.61	1.92	1.35	1.45	-0.38
Bradi1g23430.1	-	-	-2.14	-0.2	-1.97	-2.36	1.59	0.94	1.3	0.07
Bradi1g28340.1	-4.17	-4.45	-2.7	-2.19	-2.4	-2.13	1.52	1.31	1.31	0.36
Bradi1g28720.1	-2.13	-2.97	-0.7	-0.52	-2.3	-0.37	1.13	0.71	0.98	0.64
Bradi1g30026.1	-	-	-0.86	-0.65	-2.79	-1.83	1.6	1.12	1.26	-0.34
Bradi1g37730.1	-1.95	-2.12	-1.3	-2.14	-	-1.21	1.32	0.87	1.51	0.34
Bradi1g44790.1	-	-	-1.48	-2.21	-1.98	-1.61	1.68	1.45	1.05	-0.27
Bradi1g44800.1	-	-	-1.45	-1.55	-0.71	-0.96	1.49	1.22	1.1	-0.18
Bradi1g46992.1	-3.29	-2.49	-1.78	-0.61	-1.51	-2.29	1.39	0.94	1.35	0.2
Bradi1g47350.1	-8.36	-8.52	-1.48	-1.87	-1.01	-1.65	1.33	1.26	0.96	0.74
Bradi1g57290.3	-	-13.49	-10.29	-4.6	-8.98	-7.32	1.17	1.62	1.28	1.14
Bradi1g57291.2	-	-	-9.35	-5.45	-	-	1.22	1.66	1.37	0.93
Bradi1g59380.1	-0.57	-0.9	-0.31	-0.51	-0.82	-0.52	0.71	0.68	0.55	0.39
Bradi1g61910.1	-	-	-1.03	-1.7	-1.24	-1.33	1.51	1.28	1.03	0.07
Bradi1g62130.2	-2.51	-2.62	-2.05	-2.05	-2.3	-2.67	1.41	1.44	0.98	0.55
Bradi1g62500.1	-6.96	-6.13	-2.6	-0.69	-1.82	-1.65	1.55	1.22	1.19	0.08
Bradi1g74720.1	-9.56	-8.72	-0.67	0.39	-0.42	-0.84	1.26	0.81	0.9	-0.42
Bradi1g74750.1	-4.59	-4.65	-0.82	-1.33	-1.95	-2.51	1.82	0.83	1.34	-0.57
Bradi1g75430.1	-4.57	-4.34	-1.93	-1.59	-1.21	-1.61	1.78	0.98	1.11	-0.01
Bradi1g77360.3	-3.6	-2.69	-3.25	-1.22	-0.55	-1.63	1.64	0.95	1.1	0.05
Bradi2g02262.1	-5.27	-3.86	-0.76	0.49	-1.28	-1.45	1.36	0.36	1.18	-0.0
Bradi2g04800.2	-	-9.64	-0.72	0.19	-1.94	-1.87	1.4	0.83	1.16	0.11
Bradi2g08780.1	-	-	-1.19	0.1	-2.87	-2.05	1.76	0.76	1.1	-0.17
Bradi2g11295.1	-	-2.92	-1.47	-0.29	-2.81	-2.05	1.24	1.27	1.05	0.56
Bradi2g11870.1	-1.45	-1.03	-1.22	-1.02	-2.85	-2.97	1.68	1.02	0.77	0.03
Bradi2g14810.1	-4.55	-4.45	-0.17	0.08	-2.25	-1.13	1.51	0.89	0.68	-0.0
Bradi2g15450.1	-	-	-1.62	-0.73	-0.68	-0.91	1.82	0.44	1.2	-0.44
Bradi2g16591.1	-5.92	-4.76	-2.93	-3.89	-6.41	-3.48	1.98	1.4	1.14	-0.23
Bradi2g18040.1	-2.18	-1.53	-1.68	-0.34	-4.09	-4.15	1.43	1.01	1.16	0.37
Bradi2g20830.1	-7.79	-9.54	-0.48	-1.32	-0.69	-1.06	1.56	1.29	0.67	-0.35
Bradi2g20840.1	-2.11	-3.0	-1.0	-0.22	-0.72	-1.24	1.55	0.98	0.58	-0.22
Bradi2g20850.1	-3.48	-3.63	-0.82	-0.43	-1.86	-1.34	1.56	1.19	0.74	-0.1
Bradi2g25430.1	-	-6.18	-1.37	-0.25	-0.86	-1.62	1.75	1.0	0.89	-0.61
Bradi2g32520.1	-1.42	-1.49	-0.73	-0.92	-1.05	-1.49	0.98	1.07	0.97	0.36
Bradi2g34380.1	-1.47	-1.08	-0.86	-0.19	-2.96	-3.32	1.31	1.01	0.7	0.47
Bradi2g36780.1	-	-	-1.78	-0.06	-2.8	-1.43	1.51	0.89	1.22	0.27
Bradi2g37040.1	-1.4	-2.26	-1.37	-0.29	-0.31	-0.32	1.23	0.65	0.74	0.0
Bradi2g40090.2	-0.35	-0.26	-0.82	-0.2	-0.29	-0.22	0.62	0.38	0.34	0.22
Bradi2g40470.1	-	-4.81	-1.45	0.42	-0.95	-1.41	1.58	0.5	1.03	-0.15
Bradi2g48680.1	-8.88	-8.46	-1.37	-0.25	-1.26	-1.51	1.38	1.04	0.82	0.66
Bradi2g51170.1	-	-	-1.7	0.1	-0.61	-0.97	1.51	0.81	0.94	-0.1
Bradi2g51684.1	-3.93	-3.82	-3.37	-0.81	-3.31	-1.22	1.92	1.34	0.79	-0.68
Bradi2g52090.1	-0.59	-0.86	-1.56	0.18	-0.74	-0.81	1.23	0.25	0.64	0.08
Bradi2g52210.1	-	-	-2.45	-0.02	-0.67	-1.39	1.44	0.69	1.26	0.13
Bradi2g52700.1	-4.44	-4.19	-1.81	-0.28	-2.25	-2.25	1.51	1.09	0.94	0.56
Bradi2g54430.1	-1.97	-2.06	-2.88	-1.04	-2.34	-1.25	1.77	0.99	1.09	-0.45
Bradi2g60190.1	-9.6	-8.76	-2.68	-0.81	-1.06	-1.76	1.52	0.83	1.19	0.65
Bradi2g60197.1	-	-7.1	-2.2	-0.53	-0.49	-1.24	1.6	0.66	1.13	0.18
Bradi2g60646.1	-	-5.27	-1.35	0.26	-2.25	-1.98	1.49	0.71	1.24	0.16
Bradi3g01230.1	-1.18	-1.12	-1.03	-0.59	-2.18	-2.29	1.48	0.96	0.77	0.11
Bradi3g03556.1	-	-	-5.85	-0.33	-1.02	-0.96	1.7	0.79	1.3	-0.41
Bradi3g04690.2	-	-	-4.76	-2.3	-1.4	-2.18	1.62	0.96	1.34	0.68
Bradi3g15690.1	-	-	-3.35	-4.76	-1.57	-1.03	1.99	1.07	0.95	0.07
Bradi3g15700.1	-	-	-1.29	-1.37	-4.95	-5.34	2.14	0.99	0.88	-0.12
Bradi3g16960.1	-4.58	-	-0.75	-1.08	-1.08	-2.15	1.47	1.09	0.91	0.49
Bradi3g20960.1	-	-	-4.7	-2.32	-5.01	-3.83	1.73	1.49	1.31	0.08
Bradi3g27820.1	-	-	-4.64	-1.5	-3.19	-3.46	1.55	1.13	1.45	0.62
Bradi3g27840.1	-13.81	-	-1.19	0.5	-0.7	-1.61	1.44	0.68	0.92	-0.0
Bradi3g28006.1	-	-	-1.03	-0.71	-1.26	-1.75	1.41	0.88	1.0	0.77
Bradi3g28020.1	-	-	-2.1	-4.04	-1.97	-1.78	1.88	1.11	1.37	-0.45
Bradi3g28031.1	-	-	-1.25	-3.16	-2.14	-1.97	1.78	1.21	1.02	0.27
Bradi3g28040.3	-8.89	-	-1.71	-1.42	-2.42	-2.38	1.55	1.16	1.34	0.31
Bradi3g31870.1	-1.94	-2.29	-1.14	-0.49	-0.28	-0.37	1.19	0.62	1.05	-0.21
Bradi3g33106.1	-5.05	-5.97	-1.0	0.18	-0.98	-1.29	1.44	1.0	0.75	0.01
Bradi3g39140.1	-4.31	-4.89	-1.44	-0.41	-1.05	-1.11	1.41	1.12	1.15	-0.34
Bradi3g39150.1	-7.29	-7.09	-0.49	-1.24	-3.12	-2.75	1.46	1.42	0.86	0.42
Bradi3g42230.1	-	-3.9	-3.74	-5.16	-4.28	-1.96	1.72	1.73	0.79	0.24
Bradi3g51300.1	-1.37	-1.44	-1.29	-0.08	-0.35	-0.8	0.81	0.82	0.87	0.24
Bradi3g53060.2	-4.82	-4.99	-1.48	-0.83	-1.11	-0.79	1.69	0.94	1.17	-0.81
Bradi3g57445.2	-	-	-3.94	-1.76	-3.33	-2.98	2.15	1.26	0.98	-0.71
Bradi3g59714.1	-	-	-8.11	-3.48	-7.67	-9.06	1.45	1.34	1.35	1.05
Bradi3g59718.1	-	-	-6.7	-1.13	-4.41	-4.54	1.31	1.36	1.47	0.71
Bradi4g03430.1	-	-5.18	-0.61	-1.12	-1.56	-2.62	1.54	1.01	1.28	0.0
Bradi4g06080.1	-1.23	-1.48	-0.91	-1.03	-1.51	-1.72	1.18	1.06	1.0	0.24
Bradi4g07480.1	-1.91	-1.88	-0.7	-0.13	-1.36	-1.77	1.39	0.71	0.74	0.41
Bradi4g09680.2	-	-	-1.99	-3.88	-1.55	-0.78	1.83	1.23	1.06	-0.37
Bradi4g09690.1	-	-	-3.53	-3.59	-1.75	-1.1	1.86	1.25	1.07	-0.05
Bradi4g09760.1	-	-	-2.77	-1.15	-3.12	-2.41	1.87	1.1	1.12	0.18
Bradi4g11952.1	-	-	-1.95	-	-5.12	-4.51	1.99	1.6	1.1	-0.93
Bradi4g12015.1	-7.82	-8.12	-4.45	-0.21	-2.23	-1.67	1.49	1.17	1.15	0.36
Bradi4g12094.2	-	-	-3.88	-	-	-	1.82	1.47	1.44	-0.11
Bradi4g18970.1	-	-	-1.53	-2.14	-1.02	-1.99	1.7	1.54	0.95	-0.74
Bradi4g27680.3	-7.24	-6.67	0.15	-1.64	-1.98	-2.66	1.62	1.16	0.95	-0.12
Bradi4g33160.1	-5.02	-4.82	-0.49	-1.08	-1.58	-2.16	1.52	1.24	0.97	0.01
Bradi4g34590.2	-	-	-2.54	0.37	-2.39	-2.63	1.46	0.99	1.28	0.01
Bradi4g36267.1	-	-	-2.96	-3.79	-	-	2.05	1.25	1.53	-1.39
Bradi4g40070.1	-2.98	-2.28	-1.28	-0.99	-2.15	-1.61	1.25	1.13	1.22	0.38
Bradi4g40210.1	-	-	-3.03	0.11	-	-	1.82	1.02	1.25	-0.21
Bradi4g42610.1	-8.14	-8.3	-1.52	-1.41	-0.7	-1.49	1.47	1.16	1.18	0.05
Bradi5g04010.1	-	-	-	-	-0.42	-0.23	2.01	0.9	0.98	-0.94
Bradi5g04120.1	-	-	-2.66	-2.53	-1.64	-2.22	1.77	1.11	1.45	-0.26
Bradi5g06377.1	-3.67	-3.78	-2.76	-1.05	-2.57	-2.91	1.48	0.96	1.41	0.61
Bradi5g06428.3	-	-	-1.02	0.15	-0.24	-0.74	1.49	0.75	0.77	-0.4
Bradi5g14380.1	-	-	-4.8	-5.06	-1.89	-1.0	1.82	1.19	1.46	-0.79
Bradi5g14440.1	-8.29	-	-6.26	-6.09	-	-6.62	1.49	1.33	1.8	0.18
Bradi5g14450.1	-	-	-2.07	-1.61	-0.33	-0.75	1.4	0.72	1.12	0.66
Bradi5g14470.1	-	-	-1.96	-0.68	-1.13	-1.87	1.29	0.98	1.25	0.67
Bradi5g21190.2	-	-	-1.41	0.08	-0.18	-0.56	1.63	0.58	0.85	-0.74
Bradi5g27170.1	-	-	-5.9	-2.47	-8.96	-8.76	1.22	1.58	1.59	0.57

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.