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Heatmap: Cluster_59 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
0.0 0.0 0.0 0.0 0.0 0.0 12.85 11.42 10.98 3.43
0.12 0.0 2.53 8.44 1.04 2.33 113.16 84.13 65.6 27.58
0.2 0.43 1.88 2.32 0.91 1.08 22.81 15.8 13.44 8.3
1.4 1.21 4.68 1.57 2.01 3.45 21.99 18.62 14.85 6.8
0.0 0.0 0.03 0.0 0.0 0.02 1.08 0.73 0.78 0.22
0.0 0.0 0.4 1.52 0.45 0.34 5.3 3.37 4.31 1.85
1.66 1.37 4.59 6.56 5.66 6.84 86.02 73.97 74.05 38.36
0.07 0.04 0.19 0.22 0.06 0.24 0.69 0.51 0.62 0.49
0.0 0.0 2.57 2.97 0.67 1.31 14.08 10.12 11.18 3.69
0.11 0.1 0.17 0.1 0.0 0.18 1.06 0.78 1.21 0.54
0.0 0.0 7.57 4.55 5.36 6.89 67.49 57.73 43.74 17.5
0.0 0.0 6.48 6.05 10.86 9.14 49.95 41.23 37.92 15.68
0.54 0.94 1.55 3.47 1.87 1.09 13.88 10.16 13.49 6.08
0.03 0.03 3.66 2.79 5.07 3.26 25.7 24.4 19.88 17.07
0.0 0.07 0.68 35.25 1.69 5.36 1928.13 2623.15 2077.52 1884.08
0.0 0.0 0.55 8.16 0.0 0.0 830.51 1125.3 921.14 679.64
64.37 51.34 77.04 67.06 54.18 66.72 156.32 153.76 140.28 125.39
0.0 0.0 3.82 2.39 3.29 3.11 22.22 18.92 15.88 8.18
3.31 3.06 4.55 4.54 3.83 2.96 50.13 51.24 37.25 27.62
0.02 0.03 0.35 1.34 0.61 0.68 6.27 5.01 4.9 2.26
0.05 0.09 24.31 50.66 28.86 21.53 92.16 67.76 71.85 28.77
0.88 0.85 12.07 8.48 5.52 3.75 75.31 37.85 53.83 14.3
0.26 0.31 1.64 2.08 2.7 2.04 21.39 12.32 13.49 6.21
0.93 1.76 1.19 4.86 7.72 3.67 35.29 21.88 24.34 11.71
0.03 0.09 0.76 1.82 0.53 0.47 3.33 1.66 2.93 1.29
0.0 0.01 5.05 9.49 2.17 2.27 21.93 14.8 18.56 9.01
0.0 0.0 1.28 3.14 0.4 0.71 9.88 4.94 6.24 2.59
0.0 0.16 0.42 0.96 0.17 0.28 2.78 2.83 2.43 1.73
5.97 8.01 7.02 8.03 2.26 2.08 52.16 33.12 27.85 16.65
0.12 0.13 2.51 2.98 0.59 1.29 8.02 5.21 4.51 2.81
0.0 0.0 1.15 2.12 2.19 1.87 12.43 4.77 8.09 2.59
0.09 0.21 0.73 0.38 0.07 0.5 21.96 14.69 12.26 4.74
1.67 2.61 2.36 5.95 0.44 0.42 20.28 15.2 16.86 9.73
0.7 0.21 111.67 62.63 96.84 75.07 460.98 382.15 247.55 122.3
17.58 9.5 37.99 65.38 46.2 32.24 222.56 149.41 113.5 65.28
5.07 4.58 32.23 42.21 15.61 22.49 167.84 129.71 94.75 53.08
0.0 0.02 0.57 1.24 0.81 0.48 4.96 2.94 2.74 0.97
21.78 20.66 35.0 30.73 28.08 20.78 114.41 121.85 113.91 74.81
4.18 5.48 6.4 10.16 1.49 1.16 28.86 23.39 18.81 16.13
0.0 0.0 0.66 2.18 0.33 0.85 6.47 4.23 5.3 2.74
4.48 2.46 4.57 9.64 9.51 9.48 27.66 18.56 19.73 11.79
142.88 151.52 102.75 158.29 148.83 156.23 278.86 236.15 229.47 212.04
0.0 0.04 0.39 1.43 0.55 0.4 3.21 1.51 2.19 0.96
0.11 0.15 20.14 43.67 21.69 18.28 134.71 107.12 91.44 81.91
0.0 0.0 34.82 120.99 74.35 57.65 322.63 198.66 217.99 105.38
2.63 2.84 3.88 22.91 4.06 17.26 151.31 101.62 69.54 24.97
11.03 9.17 5.62 18.84 9.94 9.46 38.9 19.82 25.92 17.55
0.0 0.0 3.09 16.64 10.64 6.43 45.91 27.19 40.52 18.45
0.08 0.1 0.5 1.44 0.37 0.37 4.98 3.72 3.36 2.58
24.75 23.26 13.17 47.03 19.2 40.82 331.42 192.53 205.69 71.14
0.03 0.05 3.57 13.07 10.96 6.77 65.41 40.69 52.16 35.74
0.0 0.08 2.28 7.26 7.48 4.45 31.83 16.6 22.99 11.88
0.0 0.05 0.77 2.33 0.41 0.5 5.49 3.19 4.61 2.19
2.54 2.64 2.82 3.83 1.27 1.18 16.07 11.15 9.83 6.19
0.0 0.0 0.17 7.96 4.94 5.14 32.41 17.28 24.55 7.55
0.0 0.0 0.25 1.36 2.54 1.48 20.71 13.1 17.05 10.74
0.0 0.0 0.12 0.05 0.41 0.6 4.85 2.57 2.36 1.29
0.0 0.0 0.5 0.47 0.04 0.03 5.39 2.43 2.25 1.13
0.04 0.0 0.61 0.49 0.49 0.23 2.85 2.19 1.94 1.45
0.0 0.0 1.19 6.21 0.96 2.18 103.26 87.12 76.73 32.78
0.0 0.0 5.53 48.98 15.17 12.55 406.48 303.71 378.48 212.67
0.07 0.0 430.41 1392.62 607.92 321.97 2682.74 1575.49 1858.01 984.5
0.0 0.0 2.33 2.91 1.99 1.42 12.63 8.76 9.5 8.12
0.0 0.0 1.1 0.29 1.21 1.38 17.38 10.24 12.21 3.47
0.0 0.0 1.45 0.39 0.78 0.88 11.87 8.02 7.01 4.16
0.02 0.0 3.34 4.08 2.03 2.09 31.84 24.37 27.61 13.46
16.22 12.77 28.33 44.38 51.47 48.34 142.54 95.93 129.29 53.76
2.95 1.56 48.83 110.74 49.72 40.18 266.45 195.49 164.76 98.73
0.11 0.07 0.77 1.57 1.01 0.97 5.54 4.53 4.62 1.65
0.09 0.1 9.47 5.64 1.53 1.97 36.57 35.59 24.14 17.74
0.0 0.09 0.1 0.04 0.07 0.36 4.58 4.61 2.4 1.64
5.43 5.14 5.74 13.23 10.96 8.06 24.52 24.7 25.64 16.57
0.06 0.06 0.63 0.99 0.82 1.02 5.69 3.38 3.96 1.01
0.0 0.0 0.09 0.42 0.14 0.18 6.27 3.39 2.78 0.86
0.0 0.0 0.14 3.37 0.18 0.07 103.06 95.53 95.99 78.2
0.0 0.0 1.1 52.0 5.35 4.88 282.98 291.8 315.1 186.28
0.0 0.02 0.55 0.39 0.29 0.14 2.46 1.7 2.05 0.85
9.18 7.72 11.51 10.59 7.6 6.57 49.06 44.99 43.22 25.56
1.53 1.57 3.54 5.26 2.24 1.69 15.07 9.41 9.6 7.67
0.0 0.0 11.95 3.22 16.17 27.59 167.96 111.23 98.35 36.74
0.0 0.0 2.05 1.96 7.01 10.99 85.79 56.09 49.41 22.85
0.0 0.0 3.65 11.25 2.86 4.68 91.01 53.22 54.18 28.18
0.0 0.0 0.52 0.0 0.06 0.09 7.95 6.09 4.31 1.05
6.49 5.28 67.09 1269.5 313.03 461.82 4126.83 3293.48 3259.6 1877.97
0.0 0.0 0.05 0.0 0.0 0.0 2.51 1.98 1.93 0.66
0.0 0.0 0.79 0.52 1.13 0.58 7.44 6.65 4.43 1.37
0.1 0.15 16.81 4.87 3.85 2.41 46.58 33.85 29.32 13.95
0.36 0.42 8.4 5.59 3.94 2.64 33.74 27.77 23.15 11.86
0.0 0.0 0.51 3.86 0.57 0.48 8.22 5.95 7.28 3.01
0.0 0.0 0.36 0.2 0.0 0.0 11.63 6.65 8.09 1.07
0.16 0.25 0.51 0.62 0.28 0.4 2.92 2.69 2.85 1.6
0.0 0.0 0.23 2.03 0.0 0.0 6.63 3.81 4.49 1.63
0.03 0.02 2.58 2.77 4.53 2.62 20.47 16.44 16.72 7.64
0.0 0.0 0.0 0.0 0.13 0.15 0.69 0.32 0.34 0.09
0.0 0.0 1.91 2.09 3.87 2.59 41.13 26.08 32.98 10.12
2.29 2.13 4.29 14.03 4.9 3.88 81.44 56.81 77.32 44.36
0.0 0.0 0.87 1.97 1.5 1.06 4.99 2.98 3.02 1.35
0.0 0.0 0.06 0.05 0.47 0.88 6.21 4.02 4.84 1.02
0.03 0.0 0.14 0.15 0.0 0.11 29.52 26.31 36.59 11.9
0.0 0.0 7.28 10.04 24.39 18.29 81.16 50.6 66.65 48.43
0.0 0.0 6.83 16.56 12.15 7.28 64.86 52.57 63.07 42.37
0.0 0.0 3.45 9.67 8.06 6.2 28.37 13.71 16.45 5.48
0.0 0.0 0.75 8.08 0.09 0.1 104.11 133.7 134.74 66.27

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)