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Heatmap: Cluster_70 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
1.95 1.83 -2.65 -3.26 0.02 0.35 - - -6.24 -6.53
2.06 1.84 -2.19 -2.74 -0.27 0.01 - -5.39 -6.15 -
2.07 1.63 -5.11 -4.33 0.05 0.68 - - - -
2.11 1.88 -5.18 -5.3 -0.33 0.2 -8.6 -8.46 - -8.39
1.7 1.51 -2.21 -1.3 0.37 0.32 -2.01 -2.7 -2.63 -2.39
1.94 1.83 -5.84 - 0.29 0.38 - -4.96 - -6.51
1.75 1.83 -3.28 -2.77 0.39 0.37 -3.85 -4.29 -4.16 -4.42
1.93 1.85 -6.34 - 0.39 0.32 - - - -6.78
1.84 1.63 -2.38 -1.85 0.17 0.27 -3.52 -2.66 -2.86 -2.68
1.48 1.74 -3.23 -3.17 0.56 0.6 -1.92 -2.77 -3.1 -2.84
1.93 1.81 -5.12 -5.0 0.49 0.22 -6.46 -6.44 -6.28 -7.09
1.79 1.89 -4.42 -3.54 0.47 0.31 -6.06 -5.93 -5.29 -5.62
1.73 1.82 -3.49 -2.32 0.41 0.25 -1.91 -5.08 - -4.6
1.88 1.72 -4.36 -3.14 0.34 0.64 -6.13 -6.2 -7.38 -6.85
1.87 1.77 -5.3 -6.64 0.27 0.77 - - -9.27 -11.19
1.97 1.8 - - 0.15 0.57 - - - -
2.02 1.83 -6.23 - -0.26 0.61 -5.63 - - -
2.03 1.82 -3.25 - -0.51 0.66 - - - -
1.34 1.29 -1.38 -1.38 0.29 0.46 -1.05 -1.41 -1.2 -1.47
1.7 1.81 -4.15 -2.44 0.4 0.66 -5.47 -4.94 -5.11 -6.28
1.78 1.74 -4.04 -4.24 0.63 0.57 -4.63 -5.24 -5.53 -7.76
1.69 1.78 -2.55 -2.53 0.48 0.64 -6.58 -5.84 -6.6 -6.03
1.75 1.83 -4.22 -3.41 0.39 0.53 -3.87 -4.6 -4.72 -5.32
1.68 1.69 -3.75 -2.25 0.44 0.63 -3.18 -3.31 -3.55 -3.66
1.77 1.91 -4.33 -3.6 0.26 0.58 -8.54 -9.39 -6.76 -6.67
1.77 1.8 -2.44 -1.55 0.09 0.25 -3.57 -4.01 -3.47 -3.32
1.43 1.21 -1.19 -1.29 0.25 0.45 -1.1 -1.42 -1.34 -1.5
1.52 1.58 -1.74 -1.7 0.43 0.27 -1.65 -2.13 -2.05 -2.36
1.81 1.73 -3.49 -3.33 0.49 0.62 -5.96 -6.91 -6.6 -6.0
1.91 1.75 -8.53 -9.46 0.28 0.74 - - - -
1.94 1.73 -3.98 -3.59 0.36 0.51 - -6.99 - -7.52
1.81 1.78 -4.71 -4.12 0.42 0.69 -8.28 -10.14 -11.89 -11.22
1.83 1.8 -4.68 -2.5 0.61 0.27 -7.99 -8.84 -9.02 -7.78
1.79 2.04 - - -0.4 0.63 - -4.62 - -3.56
1.67 1.47 -2.26 -1.73 0.28 0.36 -1.69 -2.32 -1.58 -2.33
1.85 1.78 -3.59 -3.11 0.37 0.42 -4.82 -5.56 -5.26 -4.78
1.92 1.76 -4.04 -3.87 0.17 0.58 -5.54 -5.48 -5.25 -5.66
1.69 1.71 -2.09 -3.38 0.23 0.66 -3.01 -2.93 -3.3 -3.91
1.93 1.74 - - 0.39 0.6 - -7.67 - -
2.24 1.5 - -1.72 -0.01 0.2 - - - -
1.84 1.77 -5.38 -3.73 0.53 0.55 -8.4 -9.82 -11.01 -9.77
1.57 1.39 -1.43 -1.22 -0.1 0.1 -1.62 -1.23 -1.26 -1.16
1.91 1.75 -2.3 -3.24 0.11 0.42 -4.47 -4.1 -4.67 -5.22
1.63 1.47 -0.68 -2.34 -0.34 0.34 -2.35 -1.89 -1.29 -1.45
1.7 1.68 -1.57 -1.51 0.22 0.4 -3.78 -3.33 -3.46 -3.19
1.31 1.32 -1.04 -1.25 0.09 0.45 -1.04 -1.27 -1.23 -1.52
1.83 1.76 -4.02 -3.51 0.4 0.57 -4.81 -5.33 -5.14 -5.75
2.5 1.49 - -7.69 -0.76 -0.08 -8.35 -8.28 -9.46 -8.81
1.94 1.89 -3.94 -4.5 0.11 0.25 -4.92 -5.91 -5.83 -6.39
1.88 1.94 -4.12 -4.43 -0.08 0.5 -7.02 -7.46 -7.64 -7.97
1.83 1.76 -1.82 -1.43 0.05 0.3 -5.87 -4.9 - -3.49
1.89 1.86 -3.36 -2.62 -0.11 0.15 - -3.21 -2.39 -3.75
1.5 1.45 -1.19 -1.07 0.16 0.46 -1.84 -1.88 -1.95 -2.24
1.72 1.85 -3.99 -2.93 0.08 0.63 -2.9 -4.0 -3.72 -4.5
1.99 1.94 -6.88 -7.1 -0.22 0.41 - - - -
1.6 1.59 -1.17 -1.92 0.15 0.12 -1.94 -1.66 -1.91 -2.32
1.77 1.77 -2.89 -3.93 0.51 0.6 - -8.01 -6.48 -4.91
1.83 1.96 - - -0.29 0.72 - -3.33 - -
1.82 1.78 -2.73 -2.42 0.14 0.29 -3.27 -3.18 -3.43 -3.89
2.04 1.93 -5.85 -5.03 -0.1 0.11 -6.7 -7.65 -8.31 -8.28
1.92 1.19 -0.83 -1.18 0.47 0.19 -4.93 -3.77 -3.15 -2.49
1.25 0.93 -0.81 -0.47 -0.07 0.19 -0.78 -1.1 -1.0 -0.38
1.27 1.64 -1.58 -1.25 0.34 0.61 -1.94 -2.05 -1.95 -2.62
1.9 1.72 -3.97 -2.45 0.12 0.57 -4.29 -5.67 -4.56 -4.58
1.58 1.67 -1.43 -1.85 0.26 0.46 -3.05 -2.31 -2.94 -2.72
1.65 1.65 -2.88 -1.83 0.34 0.54 -2.8 -2.67 -2.72 -3.02
1.31 1.4 -1.21 -1.01 0.3 0.29 -1.24 -1.48 -1.28 -1.65
2.09 1.61 -2.22 - 0.43 -0.03 - - -3.95 -3.75
1.73 1.58 -2.33 -2.26 0.15 0.32 -2.02 -2.0 -1.96 -2.4
1.84 1.81 -5.42 -5.94 0.46 0.52 -5.63 -6.89 -7.06 -6.46
1.25 1.03 -0.52 -0.76 0.23 0.29 -0.87 -0.94 -1.24 -1.34
1.6 1.69 -1.97 -1.76 0.14 0.55 -2.53 -2.97 -2.76 -2.62
1.9 1.92 - - 0.31 0.32 - - - -7.88
1.15 1.09 -0.96 -0.54 0.04 0.21 -0.52 -0.79 -0.9 -1.18
1.78 1.69 -2.57 -2.21 0.22 0.45 -3.34 -3.17 -3.43 -3.02
1.42 1.44 -1.2 -1.28 0.3 0.14 -1.6 -1.43 -1.47 -1.41
1.74 1.69 -2.19 -3.15 0.24 0.57 -2.9 -3.23 -2.96 -3.83
1.85 1.67 -2.89 -3.09 0.4 0.57 -4.4 -4.8 -4.75 -4.6
1.74 1.77 -2.93 -1.6 0.13 0.4 -2.96 -3.66 -3.47 -3.86
0.8 0.64 -0.03 -0.4 0.16 -0.14 -0.51 -0.36 -0.5 -0.4
1.55 1.56 -3.02 -1.87 0.23 0.37 -1.99 -1.41 -1.47 -1.76

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.