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Heatmap: Cluster_1 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
1.01 1.15 - - 1.58 1.47 - - - -
0.98 1.17 -3.34 -2.91 1.41 1.16 -1.85 -3.05 -3.0 -3.13
0.52 0.68 -1.18 -1.86 0.66 0.95 -0.41 -0.42 -0.48 -0.93
1.04 1.01 -1.41 0.08 0.93 0.8 - -2.43 -1.33 -1.85
1.03 0.9 -3.98 -3.0 1.49 1.63 -9.01 -8.54 -9.45 -8.8
0.21 0.33 -0.46 0.04 0.48 0.39 -0.4 -0.21 -0.46 -0.36
1.1 0.8 -3.16 -0.35 1.65 0.85 -4.39 -3.95 -3.5 -3.61
0.49 0.6 -1.93 0.35 1.32 0.57 -1.67 -1.89 -1.5 -0.68
1.0 1.32 -3.09 -3.25 1.76 0.88 - -6.54 -5.21 -7.05
0.46 0.65 -1.07 0.42 0.94 0.72 -1.49 -1.24 -0.97 -1.37
0.5 0.56 -0.75 0.01 0.49 0.81 -0.51 -1.46 -0.47 -0.79
1.47 1.12 -1.96 -1.57 0.9 1.23 -5.44 -3.38 -3.88 -3.64
1.04 0.85 -1.59 -0.71 0.82 1.11 -1.54 -1.48 -1.78 -1.89
0.86 1.05 -2.97 -4.89 1.51 1.61 - -5.06 -5.24 -
-0.36 -0.42 -0.85 0.12 1.05 1.29 -1.51 -0.86 -0.93 -0.16
0.49 0.35 -0.35 -0.86 0.74 0.84 -0.88 -0.48 -0.35 -1.04
0.35 0.16 -0.14 -0.25 1.41 0.7 -1.35 -0.99 -1.94 -1.21
0.62 1.24 -0.65 - 1.13 -0.07 - 0.64 -0.86 -2.2
0.7 0.31 -0.48 0.52 0.93 0.77 -1.7 -1.23 -1.15 -2.48
1.17 1.5 -0.2 - 1.24 0.76 - - - -
0.97 1.01 - -0.43 1.86 0.73 - - - -
0.96 0.6 - -0.34 1.05 1.65 - - -1.72 -2.06
1.09 1.09 -4.01 -1.97 1.34 1.53 -8.04 -8.88 -7.74 -9.41
0.5 0.68 - - 1.92 1.67 - - - -
1.09 0.35 -0.68 - 1.96 1.05 - - - -
-0.7 -0.4 -0.8 -1.21 1.73 1.7 -1.63 -1.7 -2.17 -2.27
0.56 0.25 -1.21 -0.61 1.18 0.81 -1.6 -0.38 -0.89 -0.77
0.86 0.89 -3.19 -2.8 1.63 1.56 -5.8 -7.17 -6.91 -6.44
1.04 0.99 -1.37 -0.64 1.17 1.04 -1.81 -2.3 -3.84 -4.17
0.92 0.58 - -1.4 2.01 1.15 - - - -
0.65 1.05 -3.08 -0.85 1.75 1.2 - - - -5.86
0.54 0.45 -0.41 -0.16 0.63 0.35 -0.49 -0.52 -0.63 -0.61
0.93 0.97 -2.08 -0.53 1.16 1.37 -5.01 -4.28 -2.87 -2.72
0.54 0.72 -0.49 -2.32 1.71 1.16 - -2.42 -2.6 -2.95
1.87 0.46 - - 1.38 1.24 - - - -
0.34 0.31 -0.22 -0.03 0.69 0.72 -0.74 -0.7 -0.81 -0.71
2.05 1.17 - - -0.45 1.52 - - - -
-0.13 0.22 0.52 -0.73 1.16 1.07 - -3.13 -0.58 -0.38
-0.07 -0.08 -0.22 -0.81 1.38 0.74 -0.46 -0.26 -2.16 -0.69
0.94 0.9 -2.02 -2.41 0.69 1.38 -1.91 -1.45 -0.94 -1.27
0.19 -0.17 -0.61 -0.12 1.02 0.92 -0.59 -0.45 -0.63 -1.23
0.22 0.17 -0.29 0.5 0.4 0.79 -0.62 -0.43 -1.01 -0.88
1.0 1.0 -3.75 -2.22 1.37 1.61 - -6.15 -5.59 -4.45
0.63 0.83 -0.96 0.97 0.97 0.9 -5.47 -4.14 -5.17 -1.91
1.63 1.34 -3.68 -3.18 0.71 1.32 -4.88 -6.05 -7.23 -6.26
0.91 0.96 -0.41 0.41 0.9 0.72 -3.25 -2.57 -2.7 -2.65
2.07 1.21 -2.62 -4.77 -0.13 0.96 -1.92 -4.04 -3.4 -5.42
1.95 0.98 - - 1.24 0.84 - - - -
1.88 0.58 -1.01 -1.79 0.54 0.84 -3.05 -1.65 -2.04 -3.12
1.37 1.41 -1.94 -1.04 0.86 0.74 -1.57 - - -2.36
0.91 0.69 -0.95 -0.37 0.79 0.58 -0.83 -0.63 -1.25 -1.42
0.66 -0.61 - 0.17 1.55 1.42 - -0.76 -2.93 -1.67
1.21 0.81 -3.96 -0.69 1.61 1.06 - - -4.77 -3.9
0.72 0.56 -0.84 0.3 1.05 1.25 -2.5 -2.76 -3.13 -2.35
1.63 1.66 -5.53 - 0.64 1.11 - - - -
-0.07 -0.23 -1.84 -1.08 1.44 0.99 -0.89 -0.4 -0.5 -0.43
1.37 0.68 -1.63 -0.43 0.57 1.16 - - -2.01 -0.33
1.69 1.19 -6.93 -5.67 1.24 1.06 -6.88 -10.47 -9.65 -10.57
1.81 1.32 - - 0.96 0.87 - -2.26 - -
0.83 0.82 -1.18 -0.91 0.77 1.15 -1.59 -1.2 -1.85 -0.99
0.96 0.98 -3.48 -2.34 1.32 1.54 -3.23 -3.83 -3.44 -3.09
0.29 0.18 -1.67 -0.25 1.28 0.69 -0.42 -0.82 -0.82 -0.82
0.55 0.68 -1.17 0.75 1.13 0.86 - -2.41 -3.45 -0.91
1.07 1.01 -2.98 -1.82 1.24 1.54 -7.74 -5.27 -4.77 -2.91
0.66 0.53 -0.74 -0.6 0.82 0.95 -1.11 -1.08 -1.07 -0.74
1.15 1.06 -3.82 -3.08 1.39 1.4 -3.83 -3.71 -3.83 -4.43
1.99 1.21 - -2.29 -0.09 1.11 - - - -1.31
0.75 0.61 -1.93 -0.58 0.92 0.93 -0.49 -0.82 -1.01 -1.78
0.18 0.37 -2.91 -2.86 1.97 1.21 -2.08 -2.23 -1.16 -2.51
0.33 0.19 -0.85 0.09 0.81 0.82 -0.54 -0.84 -0.82 -0.62
1.15 0.94 - - 1.48 1.6 - - -5.22 -5.56
1.82 1.32 - - 0.86 1.11 - - - -
1.38 1.19 -1.26 -1.45 0.75 0.81 -3.58 -2.03 -1.91 -1.73
0.46 -0.39 - -0.97 1.61 1.11 -1.2 -0.04 -2.22 -0.99
1.44 1.52 -3.11 -1.07 0.83 1.01 - - -5.53 -
0.77 0.64 -0.27 -0.71 1.02 0.62 -1.07 -1.28 -1.3 -1.18
-0.13 1.28 - - 1.91 1.53 - - - -
0.71 0.68 -1.91 -0.87 1.25 1.16 -1.6 -1.66 -1.44 -1.67
0.27 0.36 -0.45 -0.04 0.51 0.21 -0.51 -0.13 -0.29 -0.34
0.49 0.49 -1.0 -0.31 0.67 0.45 -0.38 -0.47 -0.54 -0.42
0.59 0.16 -2.1 -1.8 1.42 1.4 -0.64 -1.49 -1.7 -2.13
0.43 0.46 -1.03 -0.13 0.73 0.79 -0.61 -0.64 -0.66 -0.87
0.69 0.54 -0.43 -0.37 0.57 0.48 -0.36 -0.61 -0.87 -0.84
0.97 0.85 -2.18 -0.84 1.02 1.15 -2.24 -1.75 -1.89 -1.2
1.03 0.8 -1.5 -2.64 0.99 1.22 -1.72 -0.91 -1.54 -2.25
1.09 1.22 -2.05 -0.97 1.33 0.96 -4.16 -3.42 -3.6 -3.21
0.56 1.15 - - 2.03 1.14 - - - -
0.54 0.52 -0.62 -0.7 0.73 0.83 -0.9 -0.63 -0.75 -0.66
-0.22 -0.13 -1.52 -0.33 1.4 0.97 -0.51 -0.71 -0.69 -0.86
1.21 1.06 - - 1.53 1.44 - - - -
0.6 0.81 -0.84 -0.33 0.56 0.35 -0.95 -0.34 -0.61 -0.59
0.95 1.04 -2.77 -1.98 1.37 1.52 -6.77 -4.16 -4.1 -4.82
0.42 0.48 -0.81 0.15 0.8 0.36 -1.05 -0.4 -0.39 -0.85

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.