Heatmap: Cluster_180 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g02327.1	-4.82	-3.99	-1.22	0.3	1.55	1.87	-	-1.25	-4.5	0.27
Bradi1g09369.1	-1.01	-0.89	0.11	0.37	0.77	0.89	-0.34	-0.5	-0.5	-0.29
Bradi1g12970.1	-	-	0.28	1.06	1.56	1.66	-2.7	-1.85	-3.73	-3.75
Bradi1g23130.3	-8.01	-6.18	0.14	0.81	1.02	1.17	-0.69	-0.11	-0.76	-0.48
Bradi1g25816.2	-0.8	-0.52	-0.21	0.58	0.94	1.12	-1.16	-0.77	-0.88	-0.51
Bradi1g32445.1	-3.99	-3.64	-0.09	0.88	1.68	1.57	-1.0	-3.01	-3.12	-2.67
Bradi1g35350.3	-0.47	-0.22	0.1	-1.46	1.12	1.3	-0.24	-1.16	-0.87	-0.95
Bradi1g35890.4	-	-	-1.28	1.31	1.42	1.66	-3.67	-1.9	-2.55	-0.43
Bradi1g42756.1	-0.92	-1.24	-1.45	-0.09	1.38	1.84	-0.49	-1.35	-3.26	-1.47
Bradi1g55120.1	-0.47	-0.56	-1.08	0.8	0.6	1.0	-0.52	-0.51	-0.18	-0.75
Bradi1g56095.1	-1.86	-1.49	0.36	0.38	1.06	1.42	-1.68	-0.94	-1.25	-0.4
Bradi1g56817.3	0.27	-1.45	0.12	-0.38	1.47	1.41	-2.47	-0.89	-1.45	-4.11
Bradi1g60270.1	-0.26	-0.28	-0.27	0.19	0.85	0.83	-0.62	-0.49	-0.67	-0.33
Bradi1g66880.1	-2.5	-2.88	-0.39	0.62	1.61	1.3	-1.85	-0.7	-1.14	-0.9
Bradi1g69557.1	-1.05	-0.82	0.04	0.35	1.05	0.74	-0.11	-0.62	-0.63	-0.54
Bradi1g74790.2	-3.22	-3.17	1.0	0.6	1.38	1.48	-3.56	-2.41	-2.44	-1.26
Bradi1g75270.1	-0.56	-0.51	-0.5	0.46	1.27	1.47	-2.99	-1.59	-1.6	-0.84
Bradi1g76800.1	-1.06	-0.99	-0.45	0.78	1.27	0.98	-0.77	-0.88	-0.67	-1.28
Bradi2g00550.1	-0.77	-0.57	-0.06	0.26	0.7	0.78	-0.73	-0.06	-0.35	-0.16
Bradi2g08510.2	-1.29	-1.2	-0.4	0.63	0.95	1.47	-1.55	-0.86	-0.87	-0.49
Bradi2g12916.1	-3.94	-3.65	0.24	0.87	1.4	1.21	-2.23	-0.84	-0.94	-0.72
Bradi2g13480.1	-0.2	-0.4	-0.27	0.39	0.76	0.86	-0.93	-0.34	-0.57	-0.44
Bradi2g25850.1	-2.42	-2.57	-1.27	0.83	1.11	1.42	-0.31	-0.53	-0.4	-1.53
Bradi2g26670.1	-1.47	-1.71	0.16	0.39	0.9	1.43	-1.71	-0.23	-0.68	-0.81
Bradi2g26752.5	-	-	-0.19	1.2	1.69	1.27	-2.08	-2.0	-1.81	-1.31
Bradi2g33350.1	-1.58	-1.35	-0.0	0.56	1.29	1.22	-0.89	-0.78	-1.05	-1.19
Bradi2g35070.2	-0.51	-0.39	0.01	0.14	0.59	0.58	-0.02	-0.37	-0.46	-0.09
Bradi2g35540.1	-	-	-0.07	1.2	1.11	1.68	-1.65	-1.04	-2.09	-1.52
Bradi2g35850.1	-4.32	-4.88	-4.07	1.12	1.68	1.79	-3.71	-3.26	-1.96	-0.81
Bradi2g43056.1	-2.3	-1.8	-3.33	1.32	1.46	1.89	-4.32	-2.81	-2.32	-4.07
Bradi2g46570.7	-0.67	-0.88	-0.01	0.64	0.8	0.9	-0.53	-0.49	-0.46	-0.92
Bradi2g50080.1	-0.88	-0.94	-0.2	0.38	0.8	0.88	-0.18	-0.49	-0.45	-0.22
Bradi2g54500.1	-	-	-0.62	0.72	1.67	1.47	-2.82	-0.74	-1.98	-0.41
Bradi2g60760.1	-6.54	-6.18	0.19	1.19	1.38	1.37	-1.42	-1.26	-1.9	-1.71
Bradi3g03647.1	-	-	-0.69	1.25	1.23	1.63	-1.16	-0.6	-1.76	-2.8
Bradi3g06330.2	-6.03	-7.78	-0.05	0.65	1.84	1.71	-3.95	-2.31	-2.39	-2.89
Bradi3g14590.1	-0.02	-0.07	-0.11	0.15	0.33	0.52	-0.25	-0.1	-0.24	-0.49
Bradi3g20740.1	-0.48	-0.4	-0.89	0.32	0.86	1.08	-0.43	-0.48	-0.53	-0.61
Bradi3g23200.1	-4.27	-3.27	0.36	0.52	1.34	1.4	-3.34	-1.07	-0.63	-0.47
Bradi3g26850.1	-5.49	-7.08	-1.28	1.38	1.51	1.81	-3.9	-2.16	-2.66	-2.87
Bradi3g31750.1	-7.53	-8.69	-0.59	0.63	2.01	1.74	-4.18	-3.08	-3.16	-3.22
Bradi3g34280.1	-0.06	0.45	-0.3	0.35	0.85	1.05	-1.24	-1.05	-1.56	-1.07
Bradi3g34680.1	-0.32	-0.26	-0.06	-0.13	0.72	0.85	-0.44	-0.38	-0.46	-0.29
Bradi3g35240.1	-	-	-3.63	0.58	2.19	1.88	-	-5.19	-2.78	-5.12
Bradi3g43890.1	-6.88	-6.04	0.42	0.93	1.18	1.07	-1.01	-0.21	-1.13	-0.86
Bradi3g44010.1	-2.02	-2.21	-1.21	0.94	1.35	1.58	-2.24	-1.32	-1.21	-0.76
Bradi3g54259.1	-4.37	-3.31	-0.78	0.91	1.73	1.82	-1.79	-2.87	-5.63	-3.38
Bradi3g54870.1	-1.46	-1.6	-0.08	0.56	0.96	0.89	-0.28	-0.43	-0.42	-0.38
Bradi3g55590.2	-0.69	-0.88	0.13	0.16	0.92	0.81	-0.58	-0.33	-0.42	-0.4
Bradi3g58630.1	-4.23	-2.5	-3.18	1.31	1.58	1.87	-3.93	-3.31	-2.82	-2.13
Bradi3g59835.1	-	-	-	1.24	1.73	2.1	-	-	-4.28	-
Bradi4g02250.1	-6.51	-6.09	-1.34	1.25	1.89	1.64	-3.26	-3.62	-3.44	-3.5
Bradi4g03864.1	-0.56	-3.22	0.42	0.82	1.53	1.56	-3.08	-3.28	-4.44	-5.75
Bradi4g06030.1	-0.53	-0.44	-0.32	0.3	0.9	0.83	-1.09	-0.51	-0.16	-0.28
Bradi4g10510.3	-5.44	-6.28	0.06	0.54	1.21	1.38	-0.78	-0.81	-0.48	-0.54
Bradi4g14920.1	-6.24	-5.96	-6.65	1.3	1.92	1.73	-3.6	-2.86	-4.29	-2.86
Bradi4g25660.1	-	-	-0.12	0.66	1.66	1.38	-1.66	-1.11	-0.9	-1.28
Bradi4g26366.2	-2.21	-2.21	-0.78	1.12	1.76	1.12	-1.64	-2.15	-2.26	-1.02
Bradi4g30720.1	-6.97	-7.94	-0.25	0.79	1.19	1.27	-0.26	-0.62	-0.9	-0.5
Bradi4g30930.1	-3.44	-2.99	-3.95	0.97	1.8	1.76	-2.11	-2.17	-2.15	-2.22
Bradi4g32020.1	-	-	0.6	1.05	1.61	1.57	-3.76	-3.04	-4.3	-2.79
Bradi4g35200.2	-6.35	-4.2	-2.71	1.65	1.48	1.83	-	-4.85	-	-1.91
Bradi4g39611.1	-	-	-	1.09	2.14	1.79	-	-	-	-
Bradi5g00810.1	-8.48	-10.65	0.36	1.05	1.51	1.47	-1.1	-2.32	-2.11	-3.03
Bradi5g16100.1	-7.85	-8.75	-0.32	0.58	1.63	1.53	-0.85	-0.99	-1.48	-1.79
Bradi5g20540.1	-4.26	-4.49	0.21	0.65	1.48	1.29	-1.62	-1.27	-1.44	-0.29
Bradi5g23166.1	-5.35	-4.94	-2.84	1.17	1.95	1.69	-4.43	-3.95	-3.88	-1.84
Bradi5g23430.1	-0.67	-0.56	-2.16	0.82	1.43	1.64	-2.11	-3.54	-2.61	-1.28

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.