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Heatmap: Cluster_80 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene
sid-dev (Zhang et al., 2022)
wt-dev (Zhang et al., 2022)
untreated (Thomas et al., 2018)
treated - synthetic auxin (Thomas et al., 2018)
untreated (Wang et al., 2019)
mowed (Wang et al., 2019)
time point 1 (Ogden et al., 2020)
time point 2 (Ogden et al., 2020)
time point 3 (Ogden et al., 2020)
time point 4 (Ogden et al., 2020)
0.59 0.61 2.21 2.85 0.42 0.27 1.92 4.68 2.67 4.77
10.27 11.17 18.2 16.56 7.76 8.07 17.79 15.48 15.42 17.74
156.74 152.51 153.35 207.6 119.18 84.95 279.1 340.74 318.18 431.23
11.31 10.2 22.32 19.14 9.91 11.68 21.11 24.14 20.25 22.28
2.79 1.97 14.7 6.76 0.56 0.44 9.8 7.94 10.6 9.47
17.52 16.16 50.97 50.7 34.63 21.54 39.35 53.99 66.83 59.31
26.37 27.77 135.54 235.16 111.89 88.82 205.33 240.81 235.39 223.4
6.93 6.71 10.88 15.56 7.73 8.56 16.54 14.69 13.1 16.18
13.23 15.44 33.13 37.24 22.5 18.45 20.89 35.92 43.59 53.52
14.34 14.46 60.18 49.97 23.91 15.35 58.38 81.7 84.97 86.29
4.14 3.72 7.89 9.24 3.07 2.19 7.6 9.95 10.16 7.35
11.9 13.49 26.61 14.91 6.31 7.53 20.18 25.32 26.33 21.44
0.73 0.65 15.18 19.04 8.63 7.06 10.86 16.57 19.5 29.5
0.27 0.33 5.4 4.57 0.97 0.67 3.77 5.47 7.98 8.35
18.07 18.6 34.1 30.06 6.75 8.9 23.33 35.03 36.92 37.72
11.79 14.16 43.15 46.07 17.61 12.48 27.28 40.58 41.69 54.06
5.98 5.34 21.37 12.86 2.92 3.19 15.76 17.95 17.71 18.73
8.95 8.84 19.5 31.98 18.05 12.09 30.57 33.16 38.27 40.3
28.59 31.1 51.34 49.13 22.38 17.3 72.55 80.39 80.04 82.16
14.09 13.77 20.34 20.81 11.11 9.67 23.8 23.62 21.17 26.56
15.01 15.12 29.72 20.36 6.36 6.15 32.59 26.38 25.6 25.83
27.52 27.19 52.6 35.93 17.17 16.04 39.1 38.82 44.89 46.76
1.92 1.34 53.1 30.3 18.95 18.52 32.12 57.96 48.65 76.86
1.37 0.69 6.75 9.17 0.96 0.59 10.23 8.0 6.35 9.11
2.41 2.39 64.42 22.51 4.79 6.66 31.83 49.59 68.48 60.22
0.03 0.02 32.78 35.12 4.71 5.54 28.1 31.71 35.44 32.75
32.52 36.03 54.14 42.41 29.86 26.37 48.06 54.38 49.16 47.53
6.41 6.47 23.88 33.61 1.42 2.1 30.94 26.58 24.6 36.21
1.25 1.45 55.62 27.39 18.45 10.83 33.17 43.34 46.2 57.89
2.46 2.93 8.74 6.1 2.47 3.69 5.77 6.18 7.37 8.14
1.53 1.57 38.86 19.4 4.9 5.79 16.42 21.83 25.45 35.46
23.94 24.44 31.01 39.2 27.73 26.29 35.0 36.63 33.24 37.55
0.5 0.32 7.1 11.51 1.38 1.36 10.16 13.12 12.84 10.5
21.27 18.05 23.46 24.97 17.77 14.53 28.32 24.38 27.1 26.55
6.96 8.43 15.33 12.43 4.5 4.27 12.38 12.63 14.83 16.29
9.57 11.78 37.16 30.53 21.04 12.95 28.02 33.67 33.71 45.78
13.03 10.42 70.36 16.45 6.41 9.22 36.36 47.18 62.62 73.62
32.08 36.12 55.96 37.71 28.19 24.91 44.98 50.16 53.21 48.35
23.27 20.64 122.71 78.55 45.57 35.48 113.6 143.42 137.12 176.59
7.01 6.72 34.01 20.36 7.48 6.62 30.48 36.48 37.12 41.25
6.9 7.43 14.06 10.52 4.37 4.36 14.61 12.46 12.48 10.93
25.84 28.12 33.18 35.19 23.93 22.85 29.36 36.53 34.89 38.09
0.0 0.0 5.24 1.79 0.83 0.85 2.99 4.07 6.46 4.62
7.1 5.13 17.89 4.54 6.49 5.32 14.72 14.82 15.31 16.96
16.59 17.3 26.39 21.19 11.98 10.74 24.9 27.08 24.95 24.47
0.08 0.05 1.59 0.23 0.32 0.38 0.85 2.13 2.23 2.01
1.47 1.68 31.71 5.28 4.04 4.24 10.59 28.02 29.34 28.36
2.63 2.45 29.42 34.0 31.14 32.46 68.75 86.33 61.46 84.76
20.67 18.25 30.04 49.43 8.3 5.81 80.6 104.82 99.87 133.36
5.88 4.83 4.32 8.78 2.37 1.54 11.39 13.31 13.77 18.38
21.37 18.32 185.35 144.2 35.44 37.37 131.55 232.55 249.96 290.17
51.76 49.04 72.87 87.88 37.11 30.55 103.02 97.73 103.33 94.96
6.79 6.63 8.29 12.31 5.56 5.26 14.99 13.32 14.63 14.86
4.56 4.11 20.92 13.02 1.24 1.04 15.22 21.43 23.82 24.99
0.29 0.34 3.06 3.42 0.22 0.61 4.23 3.39 1.4 6.22
28.17 28.52 40.15 82.04 31.65 22.43 69.28 102.59 76.61 114.45
17.79 17.61 28.91 27.42 9.66 10.19 30.46 34.19 32.5 29.56
50.66 48.46 68.33 85.49 44.39 38.97 82.14 81.87 79.16 90.58
2.78 0.77 25.23 20.31 13.72 15.29 34.54 58.4 44.35 63.06
14.43 14.09 50.25 45.57 17.1 15.49 41.6 50.0 50.16 48.81
11.19 12.47 20.82 23.82 11.29 8.76 19.97 22.55 23.2 30.14
5.67 6.01 6.9 11.46 3.45 2.64 8.62 11.26 9.22 13.75
41.4 44.88 62.76 59.67 55.53 35.68 65.93 73.47 74.89 94.08
2.76 2.69 7.33 4.53 0.86 1.07 6.28 4.8 5.3 5.96
2.32 2.2 47.74 20.84 5.69 6.84 20.46 43.25 42.78 68.82
3.55 3.95 71.76 26.37 3.35 3.2 46.47 69.03 66.09 65.33
34.96 33.23 61.14 89.42 36.04 30.58 75.59 78.19 90.02 74.5
5.97 6.23 11.48 7.0 2.34 1.92 7.71 10.69 9.4 9.83
0.44 0.69 1.98 0.93 0.4 0.33 0.92 3.01 2.59 2.42
40.29 43.2 60.28 63.1 35.62 28.27 68.27 72.64 69.42 67.91
2.91 3.21 5.45 4.4 1.63 2.08 4.65 5.5 7.11 5.47
9.81 10.68 18.23 16.99 8.05 6.53 16.93 17.34 20.68 22.39
0.03 0.0 1.84 3.95 0.18 0.25 1.8 3.96 4.52 2.36
14.85 15.39 57.65 73.07 17.36 15.32 44.42 69.63 81.99 83.08
15.33 20.37 34.46 27.94 4.24 4.56 33.34 26.64 27.6 28.13
18.28 19.31 29.45 35.0 14.64 12.89 30.92 41.62 43.4 44.27
0.41 0.49 1.74 1.15 0.16 0.36 2.04 1.98 1.94 1.64
11.47 11.94 21.93 15.58 6.18 4.83 19.42 20.09 22.56 24.15
11.44 11.42 17.69 18.15 8.18 7.0 19.09 17.16 18.21 19.04
1.92 1.86 7.38 5.48 2.16 1.85 4.4 9.2 7.87 11.71
16.18 8.17 37.96 57.99 11.5 10.55 41.31 44.83 61.55 59.0
81.44 84.59 89.69 98.24 64.4 68.0 96.26 131.99 116.23 107.32
1.54 1.15 17.79 19.04 12.42 11.97 22.45 28.22 24.35 26.97
12.88 15.01 25.56 21.62 9.21 9.08 22.23 28.98 29.7 35.51
3.42 3.92 11.89 11.83 6.23 5.54 9.27 11.55 13.05 12.72
5.02 4.4 20.12 33.85 6.64 4.9 61.9 54.29 74.58 88.8
13.57 13.82 21.79 21.46 11.99 10.88 28.27 26.86 24.35 26.13
9.16 6.56 80.61 38.01 12.46 12.09 101.04 147.54 136.82 126.61
11.02 11.84 21.16 16.07 9.85 8.07 15.23 15.85 18.13 17.12
10.88 7.28 41.77 20.38 7.95 9.2 19.84 47.21 42.94 43.18
4.54 4.79 12.33 19.27 3.11 2.93 12.77 21.89 21.4 31.88
9.67 9.51 16.84 13.98 6.91 5.64 20.77 19.12 20.41 17.1
7.18 6.63 14.68 11.81 8.46 6.06 13.4 14.81 16.4 14.93
9.06 8.99 16.33 13.64 10.54 8.67 14.07 17.57 20.35 19.3
7.18 8.83 15.05 18.91 10.15 8.51 18.62 18.89 19.82 25.25
10.37 10.18 22.88 15.54 3.66 2.67 19.71 18.2 20.89 21.51
10.02 10.77 24.11 24.12 16.97 16.84 18.81 27.01 23.69 28.65
4.05 3.71 41.47 18.61 4.61 3.09 33.63 48.29 46.24 59.55
7.01 4.47 19.77 13.89 9.24 3.6 13.64 18.75 31.13 29.75
23.21 25.13 26.01 46.14 15.89 13.2 44.68 42.69 46.92 55.2
16.41 14.87 51.47 41.47 32.1 35.96 75.25 87.09 97.51 99.89
12.93 12.96 13.2 22.0 9.24 8.55 19.58 22.06 25.63 24.17
23.63 22.89 29.64 32.53 20.21 16.06 34.6 36.53 39.79 35.05
1.01 0.46 32.56 14.18 4.04 3.08 22.52 40.57 40.89 35.18
2.17 2.22 5.91 6.63 0.33 0.15 4.94 8.86 11.92 8.3
4.32 5.2 26.09 25.31 8.62 7.01 19.59 33.75 26.9 44.4
0.49 0.19 85.31 52.96 8.34 7.26 65.54 110.78 91.33 92.93
14.2 15.38 31.21 24.14 10.55 6.44 33.0 53.3 46.31 53.88
21.03 31.32 71.97 55.94 34.4 22.69 61.4 74.36 62.67 62.6
4.96 4.38 9.52 7.76 2.86 2.86 9.5 11.01 10.18 12.12
6.02 6.62 60.01 107.15 19.27 12.19 82.41 96.42 93.71 101.19
12.48 12.69 22.3 30.95 13.29 11.77 21.73 30.37 31.28 32.85
4.11 3.5 14.79 7.65 4.17 4.47 7.94 9.48 12.03 14.75
10.98 12.33 16.03 19.18 15.47 13.23 19.98 21.24 20.27 20.93
1.17 1.21 11.31 9.84 2.56 2.19 14.54 19.01 17.29 21.68
0.0 0.0 1.22 1.07 0.78 0.43 3.8 5.71 4.65 7.3
0.74 0.78 8.62 7.06 2.37 2.34 8.64 9.79 10.25 18.01
10.29 10.01 16.44 11.42 9.99 9.46 13.97 12.86 15.77 14.05
0.33 0.24 21.94 8.23 7.59 8.34 11.86 37.59 30.58 40.9
119.63 203.72 923.42 118.86 0.0 0.72 616.54 509.91 1264.62 818.04
2.28 2.34 11.08 7.84 1.27 1.64 7.84 15.63 12.76 10.13
13.24 14.23 27.92 24.13 8.54 7.46 28.22 28.25 28.65 25.81
7.03 8.26 11.77 9.76 5.29 4.02 14.82 15.79 13.8 13.69
2.35 2.22 16.67 7.82 2.6 2.54 11.37 10.13 7.64 22.44
3.91 4.73 11.19 6.49 3.11 3.01 5.78 10.61 10.22 13.94
8.24 7.35 27.05 17.0 9.81 8.66 23.6 27.24 27.68 29.88
0.28 0.29 2.07 1.67 0.0 0.06 1.14 2.15 1.43 2.22
15.97 17.46 25.68 36.05 12.98 10.69 27.7 50.02 49.43 46.9
13.49 13.98 24.25 28.59 7.06 5.52 26.04 22.94 24.49 28.2
4.65 4.83 10.19 11.68 5.25 3.96 8.51 9.44 9.62 15.5
0.9 0.58 5.92 4.13 1.33 1.43 6.43 3.27 5.08 4.11
59.14 58.68 94.32 131.03 60.58 48.49 124.67 159.11 148.59 187.34
13.05 9.47 52.96 23.96 18.52 17.37 43.99 68.8 60.13 61.33
6.28 7.04 9.44 13.99 2.89 2.19 14.26 19.55 17.34 21.16
2.37 2.31 25.79 5.33 2.13 3.22 12.91 17.68 20.79 17.16
0.0 0.12 1.13 0.6 0.13 0.1 2.23 2.01 2.07 1.96
1.44 1.54 9.14 4.93 1.75 1.28 7.26 10.1 10.43 15.51
31.6 33.02 52.34 35.22 22.48 19.58 43.84 52.81 51.91 50.63
0.18 0.22 0.76 0.34 0.04 0.02 0.57 0.23 0.38 0.58
17.7 16.13 70.88 56.67 31.26 25.48 46.24 79.84 71.66 103.44
7.48 6.54 24.28 21.84 9.15 6.94 22.84 28.66 25.02 34.07
8.92 9.79 21.92 15.25 9.83 7.7 20.63 21.15 21.27 19.78
21.34 22.13 43.71 54.02 24.13 30.81 62.92 47.42 51.92 52.64
1.8 1.3 11.21 18.68 3.86 2.39 19.03 26.22 32.41 25.51
0.21 0.17 1.75 1.71 0.32 0.32 1.47 1.71 2.17 1.73
15.4 17.09 36.78 37.31 18.76 17.42 34.03 35.78 36.42 42.69
0.37 0.39 1.01 0.6 0.56 0.17 0.9 0.98 1.93 1.04
2.16 1.38 14.11 13.95 1.96 2.38 18.72 19.67 25.32 21.02
34.97 35.98 44.73 47.72 23.53 19.95 56.19 57.83 58.65 57.16
1.67 1.91 11.05 8.41 3.25 3.6 11.31 9.99 10.94 13.34
2.08 2.68 5.08 5.85 1.53 1.14 4.94 2.75 2.57 4.79
0.0 0.0 35.18 14.64 9.73 6.8 42.78 57.41 57.63 100.06
9.9 10.02 15.79 20.23 7.69 7.53 23.3 23.86 26.08 24.13
12.3 13.03 15.53 20.63 6.36 4.77 25.31 25.68 27.55 35.37
0.66 1.09 0.62 1.63 0.27 0.21 1.33 2.93 2.57 2.58
11.97 14.03 27.73 20.84 10.81 12.13 29.95 35.65 27.18 37.52
7.7 7.49 31.68 17.36 3.59 3.51 22.46 25.95 29.85 32.92
0.96 1.1 7.48 8.42 2.44 2.89 5.43 5.99 6.38 10.07
19.18 21.36 26.53 26.54 17.86 17.1 23.77 31.1 25.46 36.88
0.0 0.0 8.87 6.45 4.32 5.58 12.03 18.81 13.19 19.73
0.03 0.02 4.39 1.84 0.38 0.18 2.05 3.62 3.86 6.9
2.31 2.72 6.95 6.43 2.16 2.06 5.67 6.5 5.9 9.1
1.69 1.7 219.5 87.37 6.7 14.78 168.12 270.8 190.99 168.03
11.89 11.05 21.88 20.59 7.96 6.22 29.86 32.49 29.25 26.83
3.59 2.89 18.74 4.28 1.3 1.11 10.71 22.23 28.94 25.06
7.17 7.5 13.54 11.08 8.4 6.7 12.68 15.76 13.71 15.41
9.59 9.76 27.63 15.89 7.51 4.99 15.09 21.53 21.78 23.67
0.18 0.06 34.6 11.02 3.06 2.76 33.13 54.51 49.25 53.57
0.26 0.2 42.38 36.51 7.06 8.71 32.61 38.79 40.72 52.18
22.99 17.28 48.44 50.55 34.77 27.08 61.1 74.26 70.48 85.27
2.34 2.49 5.44 4.84 1.68 1.72 5.3 7.28 6.51 4.94
2.0 2.52 5.03 6.04 1.63 1.44 6.54 5.42 5.77 7.22
15.67 14.17 26.35 22.81 6.22 5.62 29.0 24.29 24.42 26.96
0.37 0.47 1.73 1.23 0.71 0.36 1.77 2.37 2.32 2.41
8.63 5.62 22.58 7.35 3.16 2.22 20.19 33.0 30.55 25.53
0.0 0.0 9.48 9.55 0.44 0.43 12.54 10.02 9.08 9.48
12.85 12.99 46.03 26.48 6.5 7.54 49.98 37.67 45.22 31.08
5.9 5.57 28.95 25.41 10.48 6.57 27.78 39.99 46.88 62.52
9.39 11.73 46.8 42.51 20.31 21.03 30.52 53.02 45.42 51.31
20.31 22.33 24.68 28.24 23.04 18.37 29.17 32.72 27.46 35.25
10.96 9.64 35.28 41.78 18.9 18.16 44.71 56.54 58.54 83.72
6.68 7.28 15.81 9.06 5.14 4.51 14.79 16.86 15.42 20.24
0.54 0.67 1.72 2.13 1.97 0.95 3.27 4.0 2.96 4.13
17.73 19.52 36.12 32.7 19.45 14.64 29.26 32.02 30.76 35.47
0.76 0.76 10.21 3.77 2.47 2.54 5.9 7.22 8.46 7.82
3.63 2.89 18.3 20.39 6.15 6.31 18.57 19.17 22.26 31.49
8.33 8.51 13.07 13.38 5.79 4.49 24.28 19.19 20.31 23.93
8.45 7.12 23.05 9.56 6.11 5.61 20.76 15.13 20.59 20.79
0.5 0.72 0.9 0.91 0.23 0.26 1.06 0.77 0.49 1.06
8.93 9.36 13.57 13.08 3.2 3.21 15.16 21.28 17.32 20.94
3.65 3.88 6.9 8.81 3.04 2.55 6.76 7.82 7.29 10.32
39.35 38.33 80.36 94.22 32.3 30.36 107.5 106.22 107.93 119.55
7.54 7.39 11.77 11.08 6.44 6.23 8.58 14.63 13.66 13.19
16.53 17.41 24.15 23.72 14.75 11.38 25.21 30.45 27.9 31.54
10.82 10.87 42.38 35.19 26.02 20.86 28.57 40.32 34.86 47.98
14.23 16.25 62.27 95.06 18.69 16.36 47.95 62.69 68.61 91.42
19.1 16.93 22.01 24.54 7.46 7.48 27.32 29.02 30.5 28.7
14.48 14.63 27.8 16.97 10.66 9.08 20.57 21.55 25.35 31.14
9.59 12.51 34.33 34.88 13.61 14.88 26.12 32.05 31.68 43.71
27.41 30.89 64.63 59.37 41.46 41.46 54.76 68.41 60.99 74.37
0.0 0.0 10.89 12.29 1.21 0.83 7.89 19.08 17.4 16.38
4.93 4.48 7.02 6.83 2.45 1.51 8.19 7.8 8.84 7.76
20.32 18.7 60.46 34.71 13.87 22.01 62.18 51.56 60.99 52.8
5.16 5.25 17.56 19.51 8.15 7.41 19.58 21.8 23.98 25.46
2.62 2.77 4.23 4.16 1.19 1.0 4.11 4.07 4.21 4.67
0.92 1.07 1.72 2.28 0.49 0.37 1.91 2.87 3.04 3.04
14.78 20.6 55.57 60.09 4.65 4.72 58.7 40.91 43.03 61.45
10.01 10.84 25.63 24.53 19.68 17.16 26.25 27.97 30.65 33.48
14.8 14.79 21.38 19.23 11.97 14.54 26.06 27.49 27.5 25.74
12.66 16.76 22.09 22.37 10.06 12.03 25.21 24.43 25.11 24.05
7.55 7.83 54.26 35.65 20.02 20.41 39.96 67.23 61.22 70.4
26.74 23.78 34.0 40.28 24.15 20.37 42.23 46.05 42.79 52.74
1.26 1.22 8.81 10.22 2.74 2.41 11.68 21.16 12.45 25.7
12.26 14.42 30.35 22.36 8.45 8.62 27.74 27.88 26.8 45.78
4.0 4.13 31.28 10.52 1.82 2.5 12.73 20.69 28.01 26.58
1.3 0.9 7.88 4.33 1.1 0.74 2.5 7.77 11.03 7.37
25.3 24.39 35.6 50.83 19.91 18.56 59.4 71.03 64.35 75.7
9.81 9.57 11.98 11.95 6.04 4.48 13.88 14.02 16.88 13.79
3.83 4.62 6.38 6.76 2.86 1.88 8.77 8.0 8.02 7.37
3.74 3.66 21.02 12.35 7.42 7.17 18.61 20.2 22.18 17.9
11.38 14.52 41.39 30.87 8.31 7.04 36.64 51.0 40.56 53.09
10.32 9.94 24.03 22.05 9.93 9.87 27.01 26.66 26.9 23.51
12.69 11.56 32.3 19.55 15.17 11.33 33.57 35.42 37.98 31.3

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)