Heatmap: Cluster_64 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g03185.1	-3.48	-2.86	0.13	0.85	-1.73	-0.57	-0.5	0.4	0.67	1.19
Bradi1g05100.2	-4.27	-4.17	-1.86	1.26	-1.14	-0.34	-2.44	-1.36	0.29	2.06
Bradi1g08106.4	-3.58	-3.07	-0.44	1.07	0.5	0.79	-1.87	-0.56	0.35	0.66
Bradi1g10640.1	-0.79	-0.84	-1.6	-0.03	0.45	0.78	-1.76	0.04	0.38	0.89
Bradi1g11250.1	-9.53	-8.12	-2.23	0.44	0.75	1.07	-1.87	0.11	0.2	1.1
Bradi1g14060.1	-6.79	-6.55	-3.03	1.39	-2.9	-2.37	-3.57	-2.71	0.57	2.37
Bradi1g14330.2	-	0.53	-	-	1.62	0.22	-	0.6	-0.57	1.09
Bradi1g20260.1	-1.54	-1.98	-0.41	1.56	-1.05	-1.13	-3.28	-0.97	0.15	1.6
Bradi1g21260.1	-2.91	-2.61	-0.57	0.75	0.39	0.71	-0.49	0.03	0.07	0.7
Bradi1g22940.1	-	-	-2.04	0.23	0.24	0.59	-0.37	0.59	0.51	1.14
Bradi1g29471.1	-1.66	-	0.29	0.46	-	-1.3	-0.04	0.11	-0.66	2.0
Bradi1g30150.1	-1.82	-1.73	-1.59	0.92	-0.34	0.06	-0.9	-0.23	0.59	1.3
Bradi1g30230.3	-8.42	-7.01	-0.66	1.56	-0.02	0.52	-1.65	-0.7	-0.04	1.05
Bradi1g32840.1	-4.55	-4.71	-2.42	-0.22	0.45	0.75	-1.03	0.15	-0.14	1.73
Bradi1g34700.1	-1.99	-1.77	-0.84	1.6	-0.18	0.04	-1.08	-0.97	-0.15	1.06
Bradi1g43417.1	-2.23	-2.25	-0.06	1.41	0.5	1.02	-4.06	-2.2	0.36	-0.06
Bradi1g44137.4	-2.39	-1.81	-0.79	1.05	0.11	0.27	-0.53	-0.4	0.1	1.05
Bradi1g44680.1	-7.87	-8.84	-1.11	0.05	0.66	1.03	-1.47	-0.23	0.45	1.19
Bradi1g45727.1	-	-	-2.99	1.15	0.12	0.54	-1.22	0.33	0.68	0.87
Bradi1g45880.1	-2.07	-3.49	0.5	0.97	-0.06	-0.04	-2.19	-0.18	0.1	1.13
Bradi1g46470.1	-4.37	-4.54	-1.62	2.07	-1.0	-0.33	-2.08	-1.84	-0.61	1.55
Bradi1g48050.1	-1.04	-0.95	-1.27	0.08	0.07	0.44	-1.12	-0.08	0.48	1.21
Bradi1g48770.3	-1.46	-0.78	0.9	0.86	-3.3	-1.88	-1.11	-0.03	0.49	1.1
Bradi1g49805.1	-	-	-0.79	1.41	0.68	1.28	-1.3	-1.19	-0.18	0.0
Bradi1g60170.1	-	-	-0.77	1.19	0.51	0.4	-1.12	0.05	0.68	0.37
Bradi1g61973.1	-1.67	-1.83	-0.59	0.44	0.48	0.3	-0.54	0.29	0.25	0.73
Bradi1g61986.1	-1.52	-1.66	-0.89	0.67	0.59	0.67	-0.22	-0.1	0.06	0.33
Bradi1g63127.3	-0.54	-0.32	-0.9	0.51	0.59	-0.13	-0.61	-0.56	0.21	0.72
Bradi1g63480.1	-6.91	-7.39	-2.24	0.89	-0.09	0.2	-0.86	0.59	0.8	1.03
Bradi1g64620.1	-8.01	-8.17	-2.33	0.35	0.15	0.26	-0.67	0.26	0.56	1.54
Bradi1g64817.2	-2.06	-2.11	-2.72	0.92	-0.54	-0.14	-0.96	-0.0	0.67	1.47
Bradi1g65580.2	-0.62	-0.56	-1.21	0.81	0.09	-0.06	-1.04	-0.74	0.37	1.06
Bradi1g66860.1	-2.83	-2.91	-1.81	0.72	-0.37	-0.02	-1.4	0.03	0.69	1.59
Bradi1g68210.4	-3.79	-3.43	-2.74	0.93	-0.93	-0.25	-2.13	-0.64	0.65	1.99
Bradi1g68530.1	-	-	-	0.58	-2.27	-3.17	-2.71	0.22	1.0	2.28
Bradi1g70970.2	-2.49	-2.44	-4.52	1.31	-0.13	-0.22	-0.66	-0.11	0.51	1.24
Bradi1g72007.1	-7.33	-	-1.64	0.66	-0.53	-1.02	-1.29	-0.88	0.91	2.03
Bradi1g73935.1	-	-	-	-0.05	-	0.03	-	0.19	1.28	2.15
Bradi1g76910.1	-0.65	-0.54	-0.5	0.3	0.27	0.01	-0.35	0.05	0.19	0.64
Bradi2g00310.1	-2.21	-1.95	-0.37	0.63	0.5	0.56	-0.9	0.11	0.28	0.57
Bradi2g01600.1	-6.47	-5.9	-6.03	-1.27	0.65	1.02	-1.79	0.51	0.93	1.22
Bradi2g05165.1	-2.13	-1.88	-	-0.24	-0.1	1.34	-0.19	1.17	0.19	-0.14
Bradi2g05340.2	-	-	-3.39	1.56	0.0	0.57	-2.17	-0.41	0.37	1.14
Bradi2g05350.1	-4.45	-4.7	-2.72	-0.04	0.15	0.46	-0.98	0.33	1.12	1.24
Bradi2g05920.1	-3.93	-4.63	-1.96	0.63	0.21	0.97	-2.11	0.01	0.19	1.37
Bradi2g11170.2	-	-	0.17	1.38	0.5	0.82	-2.23	-0.55	-0.36	0.51
Bradi2g14470.1	-1.37	-1.15	-3.26	0.44	-0.92	-0.34	-1.65	-0.05	0.62	1.83
Bradi2g15410.1	-7.28	-7.21	-2.5	-0.15	0.3	0.8	-0.48	0.35	0.65	1.24
Bradi2g17380.1	-2.82	-2.8	-1.42	1.0	0.38	0.24	-1.78	-0.05	0.51	1.13
Bradi2g17440.2	-0.43	-0.27	-3.46	0.42	0.16	0.56	-1.28	-0.45	0.01	1.17
Bradi2g18095.2	-4.74	-3.91	-3.85	-0.28	0.92	0.18	-1.81	-0.83	-0.36	2.12
Bradi2g18980.3	-	-	-0.26	1.1	-0.8	0.78	-2.6	-1.08	0.66	1.33
Bradi2g21190.2	-4.77	-4.01	-0.14	1.11	-0.53	0.34	-0.86	-0.86	0.6	1.18
Bradi2g21728.1	-1.09	-0.78	-0.34	0.69	-0.13	0.19	-0.15	-0.06	0.01	0.7
Bradi2g21890.1	-1.73	-1.62	-3.37	-0.34	0.43	0.17	-1.25	0.38	1.15	1.05
Bradi2g22490.1	-0.43	-0.3	-0.87	0.44	-0.16	0.16	-0.33	-0.05	0.26	0.65
Bradi2g25600.2	-3.5	-3.36	-0.22	0.89	0.27	0.39	-0.46	0.02	0.2	0.76
Bradi2g30800.2	-	-	-	0.33	-2.27	-1.33	-2.39	0.09	1.34	2.12
Bradi2g38230.4	-2.33	-2.65	-1.85	-0.04	0.68	1.27	-3.31	-0.81	0.57	1.16
Bradi2g46060.1	-3.11	-2.96	-0.74	0.81	0.77	0.62	-0.77	-0.32	0.04	0.81
Bradi2g46173.1	-	-	0.65	1.64	-1.38	-0.2	-	-1.4	1.23	0.41
Bradi2g47171.1	-	-	-	0.82	0.93	1.64	-	-	-1.18	1.47
Bradi2g51350.3	-1.14	-1.15	-0.69	1.01	0.1	0.22	-0.4	-0.31	0.0	0.73
Bradi2g52077.1	-6.09	-7.5	0.03	0.54	0.57	0.67	-1.02	0.11	0.29	0.71
Bradi2g53760.1	-10.07	-10.24	-3.39	1.51	-2.92	-2.35	-4.27	-1.35	0.77	2.19
Bradi2g56810.1	-1.77	-1.61	-0.81	0.71	0.4	0.61	-0.7	-0.14	0.43	0.54
Bradi2g57201.1	-7.84	-	-4.14	1.24	-2.75	-0.95	-1.91	-0.44	0.7	2.1
Bradi2g57533.1	-	-	-	1.94	-0.08	0.76	-5.05	-1.52	-1.08	1.41
Bradi2g59950.1	-0.5	-0.78	-0.51	-0.09	0.27	0.33	-0.3	0.23	-0.0	0.7
Bradi2g60456.1	-6.94	-7.11	1.59	1.1	-3.69	-2.79	-2.27	-1.44	0.28	1.5
Bradi2g60980.1	-	-	-5.45	1.62	-2.62	-2.22	-3.02	-0.29	0.96	1.87
Bradi2g61030.1	-	-	-7.22	1.7	-2.2	-1.28	-3.77	-1.04	0.75	1.96
Bradi2g61090.1	-6.62	-7.95	-2.64	1.48	-0.65	0.14	-2.88	-0.66	0.29	1.72
Bradi2g61150.1	-9.2	-	-3.71	0.1	-0.33	0.18	-3.43	-0.25	0.94	2.02
Bradi3g01170.1	-5.39	-5.2	-2.2	1.9	0.2	0.49	-3.62	-1.21	-0.61	1.19
Bradi3g04940.3	-8.87	-9.63	-0.78	1.6	-0.06	0.28	-2.85	-1.45	-0.11	1.48
Bradi3g05800.1	-4.19	-5.65	-0.78	1.12	0.78	0.66	-0.86	0.21	0.16	0.07
Bradi3g06160.1	-1.67	-1.61	-0.56	0.3	0.15	-0.12	-0.6	-0.31	0.54	1.32
Bradi3g06197.1	-6.29	-6.72	-0.91	1.54	0.09	-0.26	-1.22	-0.57	0.22	1.25
Bradi3g06770.1	-2.62	-2.45	-1.4	1.05	-0.69	-0.26	-1.39	-0.22	0.62	1.57
Bradi3g09240.2	-11.91	-10.5	-1.22	1.12	0.96	0.78	-1.45	-0.1	-0.29	0.69
Bradi3g09905.1	-	-	-	1.94	-1.05	-	-	-1.05	1.94	0.43
Bradi3g11060.1	-1.41	-1.4	-2.46	0.95	-0.13	0.11	-1.8	-0.76	0.67	1.42
Bradi3g15638.1	-	-	-	1.37	-	-5.22	-	-1.98	0.42	2.54
Bradi3g17715.2	-8.99	-8.15	-2.09	1.65	-0.4	0.6	-1.83	-0.45	0.35	1.04
Bradi3g17722.4	-8.6	-8.35	-1.22	1.52	-0.54	0.83	-2.6	-0.7	-0.11	1.33
Bradi3g17741.1	-4.95	-3.74	-2.82	1.1	0.5	0.89	-1.8	-0.74	0.01	1.28
Bradi3g17750.1	-9.89	-	-2.07	0.67	0.0	1.09	-1.75	-0.02	0.47	1.25
Bradi3g17935.1	-	-8.64	-2.02	1.16	-1.03	0.41	-1.92	-0.4	0.28	1.79
Bradi3g18330.1	-	-	-2.61	1.85	-1.91	-1.04	-3.03	-3.07	-0.08	2.1
Bradi3g22317.1	-	-	-	1.46	-0.52	-0.49	-	-0.06	-0.07	1.97
Bradi3g23280.1	-	-	0.37	-0.05	0.52	0.6	-1.66	-0.84	0.93	1.01
Bradi3g23360.3	-1.98	-2.36	-2.91	-0.94	0.81	0.27	0.04	0.34	0.73	0.99
Bradi3g35231.1	-1.41	-3.17	-1.59	-0.11	-0.22	1.16	-	1.31	0.13	0.67
Bradi3g35270.1	-6.23	-4.81	-3.94	0.81	-0.72	0.36	-2.28	0.13	0.52	1.81
Bradi3g37210.1	-0.59	-0.22	-2.5	1.19	0.45	0.02	-3.92	-2.65	0.29	1.13
Bradi3g37300.1	-9.25	-10.23	-1.78	1.68	-1.51	-1.43	-2.12	-0.42	0.44	1.78
Bradi3g37980.1	-7.48	-8.41	-1.95	1.25	-1.11	0.52	-2.3	-0.73	0.49	1.7
Bradi3g40600.2	-8.99	-10.75	-2.92	0.96	-0.38	0.46	-2.6	-0.93	0.6	1.84
Bradi3g40950.1	-8.26	-7.84	-0.43	1.22	0.09	0.44	-1.4	-0.26	-0.15	1.25
Bradi3g41770.1	-	-4.48	-	0.13	-0.12	-0.16	-	-1.49	1.14	2.17
Bradi3g44540.1	-2.7	-4.45	-1.66	1.4	0.05	0.08	-1.94	0.12	0.39	1.06
Bradi3g45250.1	-3.49	-3.41	-4.5	1.55	-0.77	-0.11	-2.09	-0.69	0.23	1.72
Bradi3g47640.1	-1.98	-1.96	-1.02	0.54	0.46	0.64	-0.69	0.06	0.28	0.79
Bradi3g49390.1	-	-	-2.7	1.69	0.74	0.41	-	-2.26	-0.61	1.46
Bradi3g50166.1	-5.35	-4.46	-5.59	1.49	0.16	0.05	-2.42	-0.44	0.26	1.49
Bradi3g51010.3	-1.51	-1.37	-1.1	0.58	0.76	0.35	-0.88	-0.12	0.22	0.77
Bradi3g51200.1	-2.81	-2.89	-2.89	0.32	0.45	0.64	-0.31	-0.1	-0.21	1.49
Bradi3g51610.1	-8.29	-9.05	-5.04	0.7	-0.23	0.64	-2.44	-0.8	0.82	1.77
Bradi3g51630.5	-	-	-7.49	0.97	-0.24	0.64	-4.66	-1.27	0.72	1.82
Bradi3g52590.1	-5.19	-4.45	-2.4	0.27	0.11	0.95	-0.86	0.12	0.82	1.09
Bradi3g53610.1	-6.65	-	-1.32	0.0	0.6	1.01	-0.94	0.17	0.78	0.76
Bradi3g55180.1	-6.7	-	-5.67	-0.69	0.66	0.91	-2.27	-0.54	0.91	1.65
Bradi3g56335.1	-8.89	-9.04	-2.75	1.59	0.35	1.02	-2.39	-1.64	-0.15	1.09
Bradi3g57525.1	-1.1	-1.93	-0.99	0.44	0.51	-0.42	-0.21	-0.93	-0.48	1.65
Bradi3g58015.1	-8.86	-	-8.31	1.91	-0.98	0.04	-5.34	-1.71	-0.52	1.88
Bradi3g58341.1	-	-	-6.34	1.14	-0.7	0.88	-5.14	-2.2	-0.03	2.04
Bradi3g59680.1	-8.96	-	-0.78	0.12	0.26	1.08	-1.22	0.52	0.2	1.01
Bradi3g59863.1	-	-	-	1.39	-1.27	-0.1	-	-1.35	0.13	2.19
Bradi3g59868.1	-5.24	-	-4.34	1.54	0.52	0.48	-2.87	-0.05	0.22	0.94
Bradi4g05200.1	-	-	-	1.45	-3.45	-2.07	-4.77	-0.83	0.78	2.21
Bradi4g05260.1	-	-	-	1.42	-1.82	-1.11	-3.46	-0.8	0.52	2.17
Bradi4g07847.2	-2.0	-1.84	0.58	0.86	0.59	-0.21	-0.27	-0.4	-0.17	0.38
Bradi4g08660.1	-0.86	-0.73	-0.08	0.59	0.03	0.48	0.05	-0.4	-0.26	0.43
Bradi4g08830.1	-6.87	-7.03	-1.75	1.55	0.64	0.82	-1.46	-0.85	0.52	0.12
Bradi4g09230.1	-1.01	-1.01	-1.55	0.73	-0.31	-0.31	-0.5	-0.37	0.32	1.41
Bradi4g15080.1	-7.22	-6.38	-1.91	0.82	0.69	1.13	-1.87	-0.12	0.4	0.71
Bradi4g15190.1	-3.87	-3.24	-2.1	-0.11	0.65	0.44	-1.04	0.14	1.0	1.1
Bradi4g17020.2	-4.87	-5.01	-0.0	1.48	0.02	-0.61	-1.47	-0.44	-0.35	1.38
Bradi4g20541.1	-	-	-3.71	2.27	-2.77	-0.59	-	-1.49	0.19	1.49
Bradi4g23670.1	-8.22	-7.97	-0.97	0.96	0.8	0.93	-1.0	-0.88	0.22	0.75
Bradi4g28890.1	-	-	-1.54	1.81	0.58	-0.37	-	-1.31	0.02	1.3
Bradi4g30360.1	-	-	-1.63	2.14	-2.66	-3.12	-2.89	-0.57	-0.38	1.77
Bradi4g30710.1	-12.14	-	-1.47	0.73	0.63	1.13	-2.25	-0.3	0.2	1.05
Bradi4g30940.1	-7.45	-7.2	-2.49	-0.07	0.4	0.37	-0.36	0.21	0.09	1.7
Bradi4g32130.2	-7.28	-9.03	-0.03	1.06	0.52	0.55	-1.95	-0.2	0.25	0.78
Bradi4g35376.2	-0.04	0.4	-0.94	0.69	-0.97	-1.15	-0.06	-1.52	-0.17	1.27
Bradi4g41040.1	-3.53	-4.46	-2.83	1.18	-0.65	-0.02	-1.84	-0.31	0.7	1.64
Bradi4g43050.3	-6.27	-7.44	-4.18	1.14	-2.31	-1.57	-3.84	-0.36	1.19	2.02
Bradi4g43290.1	-2.52	-2.01	-0.86	0.57	0.59	0.36	-1.07	-0.16	0.23	1.15
Bradi4g44440.1	-	-8.01	-3.45	0.96	0.03	0.24	-3.17	-0.47	0.68	1.73
Bradi5g00980.1	-4.67	-	-	1.63	0.15	1.43	-	-1.37	0.1	0.69
Bradi5g02948.1	-	-	-	-	-	-	-	-	-	3.32
Bradi5g08650.1	-9.25	-	-3.59	1.93	-1.56	-0.49	-1.62	-0.78	-0.44	1.76
Bradi5g08707.1	-	-	-1.26	1.34	-2.57	-1.03	-1.83	-1.19	1.3	1.69
Bradi5g10570.1	-2.99	-2.8	-1.53	0.74	0.64	0.76	-1.43	0.01	0.31	0.89
Bradi5g11590.1	-3.43	-3.79	-0.95	1.29	-1.72	-1.7	-1.74	-0.25	0.6	1.85
Bradi5g11840.1	-2.62	-2.69	-0.68	0.83	-0.05	0.41	-1.03	-0.22	0.41	1.21
Bradi5g16730.1	-1.51	-1.22	-1.29	0.51	-0.39	0.23	-0.39	-0.24	0.18	1.43
Bradi5g17230.4	-5.14	-5.05	-2.37	0.02	0.74	0.13	-0.68	-0.18	0.86	1.4
Bradi5g18420.3	-5.14	-4.65	-1.41	0.87	-1.26	-0.53	-1.57	-0.13	0.8	1.86
Bradi5g19680.1	-7.05	-7.48	-4.29	0.34	1.32	1.42	-3.9	-2.62	-0.59	1.38
Bradi5g20557.1	-	-12.03	-1.65	1.3	0.04	0.13	-1.6	-0.05	0.36	1.33
Bradi5g26160.1	-	-	-0.9	0.96	0.72	0.74	-2.71	-0.28	-0.14	1.21
Bradi5g26567.1	-1.93	-1.87	-1.4	-0.14	0.68	0.53	-0.49	0.41	0.52	0.74
Bradi5g26610.1	-2.46	-2.14	-2.95	0.43	0.53	0.52	-0.78	0.35	0.37	1.05

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.