Heatmap: Cluster_113 (Brachypodium distachyon HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	sid-dev (Zhang et al., 2022)	wt-dev (Zhang et al., 2022)	untreated (Thomas et al., 2018)	treated - synthetic auxin (Thomas et al., 2018)	untreated (Wang et al., 2019)	mowed (Wang et al., 2019)	time point 1 (Ogden et al., 2020)	time point 2 (Ogden et al., 2020)	time point 3 (Ogden et al., 2020)	time point 4 (Ogden et al., 2020)
Bradi1g00450.3	-1.18	-1.21	0.88	0.66	-0.31	-0.52	0.02	0.11	0.08	0.09
Bradi1g02540.1	-2.35	-2.45	1.26	0.61	-0.72	-0.9	0.13	0.13	0.22	0.27
Bradi1g03320.3	-	-	1.73	0.26	-2.98	-2.76	-0.13	0.78	0.24	0.48
Bradi1g04180.2	-2.17	-2.04	1.13	0.31	-0.53	-0.52	-0.16	0.23	0.26	0.54
Bradi1g06570.3	-6.57	-6.27	1.42	-1.25	-0.84	-0.3	0.28	0.69	0.22	0.61
Bradi1g10090.6	-0.98	-1.03	0.93	0.54	-0.44	-0.52	0.06	0.22	0.01	-0.02
Bradi1g14127.4	-1.33	-1.19	0.74	0.59	-0.22	-0.46	0.19	0.17	0.21	-0.04
Bradi1g14430.1	-1.22	-1.42	1.1	-0.22	-0.49	-0.35	-0.11	0.43	0.29	0.26
Bradi1g14910.4	-0.82	-0.67	0.98	0.54	-0.97	-0.9	-0.14	0.29	0.14	0.15
Bradi1g20410.2	-0.8	-0.84	0.72	0.51	-0.18	-0.34	-0.15	0.07	0.05	0.17
Bradi1g22850.1	-1.51	-1.34	0.65	0.6	-0.21	-0.23	0.09	0.31	0.17	0.04
Bradi1g23840.1	-2.12	-1.43	0.98	0.27	-0.67	-0.55	0.51	0.34	0.36	-0.08
Bradi1g24210.6	-0.86	-0.78	0.93	0.28	-0.62	-0.44	-0.15	0.11	0.25	0.25
Bradi1g24730.5	-1.95	-1.99	1.0	0.46	-0.69	-0.53	0.09	0.51	0.23	0.19
Bradi1g25057.1	-1.88	-1.83	1.01	0.79	-0.51	-0.38	-0.05	0.13	0.12	0.11
Bradi1g27080.1	-1.04	-0.85	0.61	0.35	-0.45	-0.51	0.32	0.2	0.22	0.23
Bradi1g27170.2	-0.93	-0.83	0.85	0.51	-0.17	-0.3	-0.24	0.01	0.09	0.09
Bradi1g27710.1	-1.61	-1.54	0.97	0.63	-0.2	-0.49	-0.0	0.21	0.03	0.09
Bradi1g29510.5	-2.49	-2.58	1.45	0.55	-0.64	-0.4	-0.44	-0.05	0.2	0.29
Bradi1g35070.1	-2.14	-1.79	0.92	0.35	-0.32	-0.09	0.12	0.28	0.14	0.23
Bradi1g35910.2	-2.23	-1.93	1.06	0.65	-0.88	-0.63	0.44	0.3	0.07	0.05
Bradi1g37510.1	-1.04	-1.01	0.88	-0.07	-0.26	-0.18	0.09	0.29	0.11	0.18
Bradi1g38040.7	-5.71	-5.95	1.26	0.84	-1.06	-1.35	0.24	0.27	0.4	0.27
Bradi1g40780.1	-0.94	-0.89	0.93	0.61	-0.53	-0.55	-0.24	0.0	0.06	0.32
Bradi1g42550.1	-3.25	-4.51	1.93	-0.94	-1.73	-0.8	0.12	0.22	0.16	0.33
Bradi1g42780.1	-1.63	-1.49	0.97	0.78	-0.58	-0.63	-0.03	0.3	-0.05	0.2
Bradi1g43630.2	-2.84	-2.63	1.52	0.06	-0.78	-0.65	-0.33	0.26	0.21	0.5
Bradi1g44060.6	-3.13	-3.17	1.16	0.7	-0.7	-0.78	0.39	0.16	0.39	-0.03
Bradi1g46970.2	-1.23	-0.94	1.06	0.57	-0.8	-0.62	0.08	0.23	0.09	-0.05
Bradi1g47521.1	-	-	2.0	0.61	-1.8	-3.89	0.33	-0.27	-0.04	0.08
Bradi1g48147.3	-3.89	-3.88	1.12	0.13	0.03	-0.22	0.2	0.31	0.28	0.17
Bradi1g48230.1	-1.03	-1.1	0.98	0.6	-0.74	-0.63	0.26	0.12	0.13	-0.12
Bradi1g52280.1	-3.49	-3.32	1.3	0.05	-1.17	-0.71	0.06	0.66	0.47	0.31
Bradi1g52480.2	-2.05	-1.69	1.18	0.68	-0.91	-1.24	0.32	0.16	-0.03	0.35
Bradi1g57089.1	-0.73	-0.69	1.33	0.53	-1.18	-0.98	-0.55	0.17	0.0	0.08
Bradi1g57137.1	-1.02	-1.1	1.16	0.5	-0.9	-0.96	0.21	0.06	0.14	0.06
Bradi1g58050.1	-0.98	-0.82	0.77	0.4	-0.51	-0.39	0.08	0.16	0.24	0.11
Bradi1g58180.1	-0.56	-0.47	0.47	0.15	-0.28	-0.25	0.05	0.28	0.16	0.11
Bradi1g58230.3	-1.92	-2.16	0.99	-0.0	-0.75	-0.52	0.54	0.26	0.39	0.34
Bradi1g61637.1	-0.33	-0.44	0.87	0.21	-0.43	-0.45	-0.34	0.14	0.03	0.14
Bradi1g61890.4	-1.59	-1.61	0.96	0.31	-0.9	-0.74	0.06	0.44	0.28	0.48
Bradi1g64460.5	-2.01	-2.03	1.02	0.52	-0.46	-0.54	-0.09	0.22	0.34	0.33
Bradi1g67090.1	-0.52	-0.51	0.4	0.34	-0.21	-0.16	-0.04	0.14	0.22	0.03
Bradi1g68300.1	-3.21	-3.34	1.26	-0.19	-0.49	-0.28	-0.11	0.35	0.45	0.5
Bradi1g68510.2	-1.04	-1.08	0.58	0.44	-0.38	-0.59	0.03	0.25	0.37	0.32
Bradi1g72160.6	-0.83	-0.68	0.87	0.01	-0.44	-0.57	-0.13	0.09	0.34	0.4
Bradi1g72490.3	-1.47	-1.51	1.17	0.17	-0.56	-0.4	0.06	0.32	0.22	0.04
Bradi1g75010.1	-0.83	-0.59	0.87	0.33	-0.48	-0.37	0.1	0.09	0.14	-0.05
Bradi1g75390.4	-3.32	-3.01	1.37	0.61	-0.82	-0.74	-0.26	0.33	0.27	0.27
Bradi1g77160.1	-1.73	-1.55	1.17	0.26	-0.64	-0.59	-0.07	0.13	0.34	0.37
Bradi2g00360.1	-1.41	-1.38	0.89	0.39	-0.21	-0.15	0.01	0.05	0.09	0.26
Bradi2g01540.1	-1.77	-1.84	0.92	0.46	-0.49	-0.38	0.29	0.25	0.25	0.1
Bradi2g02531.1	-2.97	-3.13	1.32	0.61	-0.73	-0.38	-0.28	0.18	0.09	0.42
Bradi2g06060.2	-1.34	-1.19	0.94	0.54	-0.61	-0.78	-0.16	0.2	0.24	0.41
Bradi2g12550.1	-1.25	-1.29	0.91	0.3	-0.13	-0.26	-0.17	0.18	0.14	0.24
Bradi2g13580.1	-2.44	-2.24	0.96	0.65	-0.85	-1.02	-0.3	0.3	0.38	0.76
Bradi2g15390.5	-1.03	-0.9	1.02	0.45	-0.58	-0.47	-0.36	0.09	0.21	0.24
Bradi2g17933.1	-1.0	-0.82	1.19	0.21	-0.79	-0.51	-0.42	0.4	0.18	0.02
Bradi2g18767.2	-3.41	-3.46	1.31	0.71	-1.11	-1.02	0.22	0.25	0.23	0.28
Bradi2g19800.1	-1.03	-0.91	0.81	0.42	-0.34	-0.41	0.2	0.08	0.17	0.0
Bradi2g24380.4	-1.17	-1.2	1.21	0.63	-0.52	-0.74	-0.36	0.02	0.16	0.07
Bradi2g24967.2	-1.5	-1.52	1.05	0.45	-0.7	-0.89	0.18	0.19	0.2	0.36
Bradi2g34660.10	-2.5	-2.19	1.05	0.53	-0.87	-0.77	0.08	0.24	0.44	0.44
Bradi2g37191.2	-1.54	-1.41	1.45	0.27	-1.09	-1.14	0.4	0.19	0.23	-0.36
Bradi2g37440.1	-1.47	-1.4	1.0	0.46	-0.88	-0.74	0.28	0.23	0.44	0.0
Bradi2g39160.1	-0.87	-0.49	0.48	0.48	-0.49	-0.36	0.13	0.22	0.14	0.12
Bradi2g40500.1	-0.88	-0.98	0.95	0.31	-0.27	-0.1	-0.18	-0.08	-0.06	0.3
Bradi2g41180.1	-1.19	-1.23	0.84	0.41	-0.37	-0.31	0.09	0.27	0.05	0.17
Bradi2g51712.1	-5.01	-5.23	1.78	0.95	-1.26	-1.38	-0.15	0.1	-0.05	-0.26
Bradi2g53990.1	-0.73	-0.51	0.63	0.25	-0.16	-0.25	0.2	0.04	0.06	-0.0
Bradi2g54640.1	-0.65	-0.6	0.79	0.24	-0.57	-0.41	0.13	-0.02	0.2	0.18
Bradi2g58420.1	-0.81	-0.76	0.94	0.44	-0.23	-0.51	-0.21	0.06	-0.03	0.16
Bradi2g61400.2	-1.61	-1.51	1.26	0.49	-0.84	-1.21	-0.18	0.15	0.07	0.57
Bradi2g61640.3	-1.03	-0.97	0.74	0.39	-0.5	-0.55	0.1	0.24	0.24	0.26
Bradi3g02320.1	-0.97	-0.88	0.72	0.23	-0.27	-0.09	0.03	0.19	0.17	0.1
Bradi3g02750.5	-0.66	-0.43	0.57	0.26	-0.28	-0.26	-0.11	0.1	0.16	0.23
Bradi3g05086.1	-2.9	-2.95	1.53	0.42	-1.4	-1.31	0.46	0.15	0.36	-0.08
Bradi3g05340.1	-1.8	-1.78	0.86	0.39	-0.65	-0.58	0.15	0.34	0.5	0.27
Bradi3g05520.3	-1.69	-1.56	0.84	0.02	-0.12	-0.05	0.07	0.34	0.2	0.26
Bradi3g05970.1	-0.85	-0.64	0.94	0.23	-0.78	-0.75	-0.16	0.2	0.35	0.29
Bradi3g06120.1	-3.55	-3.72	1.09	0.23	-0.8	-0.53	0.51	0.59	0.35	0.08
Bradi3g06180.1	-1.11	-0.84	0.66	0.47	-0.12	-0.48	0.2	0.21	0.06	0.04
Bradi3g06210.4	-1.23	-1.12	0.92	0.65	-0.5	-0.52	0.1	0.04	0.2	-0.02
Bradi3g06957.4	-1.05	-0.98	0.99	0.46	-0.8	-0.43	0.05	0.25	0.17	-0.03
Bradi3g10180.4	-1.2	-1.13	0.74	0.66	-0.29	-0.35	-0.07	0.12	0.05	0.23
Bradi3g10320.3	-0.74	-0.45	0.86	0.4	-0.5	-0.39	0.12	0.08	0.01	-0.15
Bradi3g11180.1	-0.89	-0.64	0.8	0.36	-0.23	-0.13	-0.25	-0.01	0.2	0.06
Bradi3g12790.4	-0.46	-0.36	0.76	0.08	-0.76	-0.46	-0.1	0.14	0.26	0.27
Bradi3g14917.1	-2.12	-1.71	1.02	0.69	-0.32	-0.63	-0.04	0.18	0.35	-0.01
Bradi3g15500.3	-1.39	-1.3	0.98	0.39	-0.96	-0.92	-0.22	0.41	0.33	0.52
Bradi3g19690.3	-1.02	-0.89	0.77	0.16	-0.37	-0.13	0.11	0.27	0.1	0.14
Bradi3g20101.14	-2.3	-2.46	1.58	0.84	-1.47	-1.5	0.15	-0.38	0.25	0.06
Bradi3g21520.1	-1.23	-1.28	0.94	0.56	-0.43	-0.27	-0.01	0.11	0.03	0.15
Bradi3g22380.1	-1.15	-1.18	0.87	0.46	-0.28	-0.35	-0.03	0.1	0.18	0.16
Bradi3g25620.1	-1.37	-1.28	0.86	0.67	-0.55	-0.59	0.21	0.15	0.23	-0.01
Bradi3g28250.8	-1.56	-1.51	0.95	0.39	-0.24	-0.15	0.22	0.01	0.21	-0.01
Bradi3g33431.1	-1.88	-1.84	1.11	-0.13	-0.62	-0.62	0.31	0.37	0.33	0.36
Bradi3g36630.1	-1.25	-1.19	0.93	-0.15	-0.17	-0.29	0.33	0.26	0.15	0.09
Bradi3g40920.1	-1.9	-1.58	1.09	0.2	-0.42	-0.2	0.12	-0.04	0.27	0.3
Bradi3g41760.1	-1.78	-1.88	0.98	0.11	-0.28	-0.3	-0.09	0.23	0.33	0.47
Bradi3g46170.1	-0.85	-0.66	0.85	0.51	-0.86	-0.6	0.11	0.07	0.2	0.13
Bradi3g46960.1	-0.65	-0.16	0.62	0.05	-0.6	-0.22	-0.04	0.22	0.22	0.11
Bradi3g47270.4	-1.03	-1.04	0.87	0.39	-0.45	-0.56	-0.17	0.04	0.27	0.43
Bradi3g47413.1	-2.18	-2.13	1.4	0.46	-1.76	-2.02	0.64	0.07	0.27	0.23
Bradi3g48130.1	-1.27	-1.05	0.79	0.53	-0.32	-0.38	-0.12	0.19	0.14	0.26
Bradi3g49386.1	-5.44	-4.64	1.5	0.69	-2.72	-2.51	0.58	0.39	0.34	0.14
Bradi3g53107.5	-1.08	-0.85	0.8	0.41	-0.84	-0.56	0.37	0.33	0.26	-0.13
Bradi3g53956.1	-1.84	-1.58	1.45	0.3	-2.68	-3.14	-1.06	0.51	0.36	0.97
Bradi3g54120.1	-1.12	-1.14	1.21	0.04	-1.24	-0.78	-0.43	0.35	0.3	0.57
Bradi3g55570.1	-0.95	-1.2	0.77	0.01	-0.49	-0.38	0.06	0.27	0.32	0.44
Bradi3g59510.1	-1.56	-1.51	1.28	0.63	-0.64	-0.74	-0.09	0.15	0.17	-0.14
Bradi3g60570.1	-1.8	-1.52	1.34	-0.19	-0.58	-0.5	-0.33	0.26	0.58	0.11
Bradi4g00703.1	-2.96	-3.7	1.64	0.26	-1.59	-1.53	-0.18	0.04	0.48	0.59
Bradi4g03867.1	-1.14	-0.96	0.8	0.72	-0.35	-0.59	-0.07	0.12	0.04	0.17
Bradi4g05100.2	-4.05	-2.78	1.39	1.01	-1.19	-1.51	-0.16	0.36	0.19	0.08
Bradi4g05157.1	-0.93	-0.82	0.86	0.19	-0.15	-0.35	0.04	0.04	0.27	0.02
Bradi4g07267.1	-4.69	-4.37	1.43	0.68	-0.54	-0.83	-0.27	0.18	0.4	0.11
Bradi4g07450.1	-2.52	-2.39	1.45	0.11	-0.51	-0.48	0.08	0.25	0.05	0.17
Bradi4g07990.1	-0.98	-0.92	0.66	0.66	-0.29	-0.44	-0.07	0.2	0.03	0.17
Bradi4g09557.1	-	-	1.84	-0.54	-2.76	-3.87	0.04	0.68	0.67	0.38
Bradi4g09872.1	-	-	1.57	0.93	-4.62	-5.14	0.72	0.27	0.44	-0.26
Bradi4g10655.2	-7.79	-6.87	1.59	0.76	-1.87	-1.53	0.44	0.27	0.14	0.0
Bradi4g12800.1	-	-	1.64	0.93	-1.47	-1.64	0.15	0.28	-0.02	-0.01
Bradi4g12920.2	-1.39	-1.43	1.4	0.2	-0.8	-0.87	-0.09	0.13	0.26	0.15
Bradi4g15060.3	-1.38	-1.2	0.78	0.59	-0.46	-0.61	0.16	0.37	0.34	-0.16
Bradi4g16840.1	-0.83	-0.72	0.75	0.44	-0.11	-0.2	0.09	0.04	0.02	-0.17
Bradi4g25870.1	-1.27	-1.23	0.89	0.44	-0.79	-0.7	0.29	0.28	0.4	-0.01
Bradi4g26210.1	-1.01	-1.0	0.73	0.51	-0.49	-0.54	-0.02	0.23	0.22	0.26
Bradi4g26610.1	-1.46	-1.49	0.87	0.77	-0.23	-0.44	-0.07	0.01	-0.02	0.28
Bradi4g27920.1	-0.83	-0.71	0.62	0.09	-0.37	-0.25	0.3	0.29	0.27	-0.08
Bradi4g28010.1	-0.98	-0.93	0.81	0.19	-0.08	-0.38	0.1	0.16	0.15	0.07
Bradi4g28188.2	-5.12	-4.96	1.87	0.9	-2.43	-2.33	-0.27	0.17	0.28	-0.23
Bradi4g35080.1	-1.24	-1.47	0.95	0.43	-0.68	-0.76	0.12	0.11	0.33	0.39
Bradi4g37147.2	-3.65	-3.66	1.57	-0.17	-1.38	-1.85	-0.43	0.36	0.34	1.03
Bradi4g38060.1	-1.87	-2.23	1.49	-0.08	-0.66	-0.48	-0.4	0.31	0.37	0.17
Bradi4g39080.4	-3.58	-3.63	1.32	0.17	-0.92	-0.56	-0.09	0.28	0.22	0.75
Bradi4g39210.2	-1.27	-1.25	0.71	0.2	-0.55	-0.66	0.01	0.47	0.35	0.48
Bradi4g39680.1	-0.8	-0.57	0.66	0.46	-0.22	-0.21	-0.12	0.01	0.19	-0.0
Bradi5g01462.9	-0.67	-0.77	1.24	0.21	-0.6	-0.84	-0.33	-0.06	0.03	0.35
Bradi5g10770.1	-4.62	-5.21	1.85	-0.33	-1.8	-1.32	-0.07	0.41	0.31	0.39
Bradi5g13070.6	-0.72	-0.24	0.7	0.28	-0.67	-0.76	0.08	0.14	0.2	0.24
Bradi5g16660.1	-7.4	-8.56	1.48	0.14	-0.55	-1.03	-0.13	0.89	0.15	0.08
Bradi5g16817.4	-3.95	-3.58	1.26	-0.01	-1.19	-0.9	0.21	0.7	0.48	0.4
Bradi5g17900.6	-5.85	-6.6	1.3	-0.1	-1.16	-0.84	-0.04	0.53	0.58	0.73
Bradi5g19030.8	-1.16	-0.99	0.89	0.19	-0.43	-0.37	0.1	0.04	0.38	0.18
Bradi5g21740.1	-2.05	-2.59	1.45	0.21	-0.38	-0.68	-0.54	-0.35	0.46	0.55
Bradi5g22187.1	-0.45	-0.55	0.85	0.31	-0.43	-0.53	-0.1	0.03	0.19	0.02
Bradi5g23230.3	-0.6	-0.7	0.71	0.35	-0.33	-0.35	-0.09	0.04	0.16	0.2
Bradi5g23700.2	-1.41	-1.39	0.88	0.55	-0.31	-0.34	-0.17	0.14	0.13	0.34
Bradi5g24387.3	-1.35	-1.19	0.68	0.54	-0.49	-0.41	0.28	0.38	0.09	0.09
Bradi5g25800.1	-1.2	-1.12	0.95	0.19	-0.3	-0.42	-0.26	0.08	0.21	0.5
Bradi5g26907.2	-2.29	-2.09	1.82	-0.01	-2.35	-2.28	0.2	-0.44	0.27	0.63

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.