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Heatmap: Cluster_2 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.2 -1.34 -1.6 -1.28 -1.29 -1.29 -0.23 0.34 0.91 1.16 -0.22 -0.54 0.58 0.43 -0.35 0.57
-1.37 -0.6 -0.23 0.06 0.39 0.32 -0.43 -1.05 1.38 1.74 0.33 0.43 -2.43 -2.62 -2.91 -2.0
0.1 0.01 -0.95 -0.89 -1.25 -0.69 -0.4 -0.41 1.46 1.12 0.52 0.19 -0.6 -0.43 -0.58 -0.44
0.01 -0.25 -3.56 -2.74 -5.07 -3.78 -0.58 0.75 1.64 2.1 -0.5 -0.29 -1.15 -1.0 -1.08 0.15
-1.46 -2.57 -2.71 -3.62 -3.11 -1.29 -1.91 -0.56 1.11 1.07 0.26 -0.57 1.06 1.04 -0.27 1.41
0.11 -1.05 -3.13 -5.6 -2.63 -1.8 -0.56 -0.28 1.94 1.61 0.75 0.37 0.15 -0.79 -2.04 -0.82
-1.14 -0.32 -1.26 -0.34 -0.79 -1.9 -0.45 0.16 1.69 2.1 0.17 -0.13 -1.63 -1.68 -1.75 -1.43
-0.79 -2.47 -1.33 -1.35 -0.99 -0.53 -0.12 -0.11 1.54 1.36 0.04 -0.7 0.29 0.19 0.19 -0.37
-0.4 -0.99 -6.57 -5.76 -7.26 -7.22 -7.86 -8.08 1.23 1.29 0.0 -2.69 1.18 1.02 1.42 0.82
-1.17 -1.47 -0.93 -0.55 -0.42 0.02 -0.79 -1.34 1.51 2.1 0.33 0.27 -1.2 -1.72 -1.43 -0.82
-0.76 -0.06 -3.15 -2.39 -1.71 -1.72 -0.69 0.15 1.92 2.15 0.4 -0.13 -1.59 -1.86 -2.23 -0.9
-0.32 -0.35 -5.23 -5.12 -5.74 -4.12 -3.64 1.23 2.03 2.05 0.04 -0.8 -1.24 -0.9 -0.98 -0.89
-0.07 -0.03 -3.53 -3.98 -2.86 -2.1 0.09 0.35 1.36 1.64 0.49 0.05 -0.03 -0.52 -1.35 0.05
- - -2.02 -0.95 -1.89 -0.64 0.04 -6.26 2.53 2.03 0.97 0.55 - - - -
-4.75 -1.97 - - - -5.33 - -3.77 2.27 2.15 1.17 -0.78 -2.06 -1.02 0.68 0.25
-0.73 -1.34 -2.28 -1.6 -1.92 -0.25 -0.27 -0.73 1.3 2.57 0.74 0.04 -2.07 -2.64 -2.84 -1.81
-1.02 -1.65 -1.9 -1.42 -2.08 -2.05 -0.35 0.3 1.78 2.08 0.13 -0.21 -0.47 -1.04 -1.66 -0.13
- -4.45 -1.34 -1.01 - - - -0.77 0.28 3.2 1.43 0.21 - - -2.04 -
-0.49 -1.08 -3.34 -3.59 -5.0 -4.63 -0.6 0.59 1.69 2.22 -0.9 -1.02 -0.24 -0.2 -0.26 -0.08
-0.18 0.13 -1.37 -0.97 -1.79 -0.93 -0.23 -1.19 1.56 1.14 0.51 0.67 -0.56 -0.75 -0.87 0.06
0.02 -0.82 -1.95 -1.54 -0.9 -0.97 0.02 -0.91 1.37 1.48 0.89 0.49 -0.25 -0.49 -1.25 -0.72
-0.52 -0.62 -3.03 -2.38 -0.97 -0.7 0.44 0.32 1.62 1.34 0.14 -0.33 0.24 -0.6 -1.82 -0.03
-6.22 - -1.61 -1.07 -1.11 -1.25 -2.12 -2.12 2.04 2.5 1.05 0.95 -4.77 -5.87 - -5.48
-2.15 -2.04 -0.5 -3.38 -3.63 -3.74 -3.04 1.86 2.14 2.59 -5.33 -2.11 -3.16 -4.26 - -
-0.69 -0.6 -1.93 -1.64 -0.21 -0.96 -0.28 -0.32 1.29 1.22 0.57 0.37 0.1 -0.76 -0.32 0.16
-0.36 -1.92 -2.37 -2.41 -1.72 -1.6 0.23 0.09 1.28 1.28 0.0 -0.38 0.23 0.31 0.46 0.38
-2.12 -1.19 -4.66 - -1.07 -0.45 -5.33 - 1.79 2.67 0.86 0.42 - -1.52 -0.77 -2.87
- - -2.08 -1.2 -3.64 -1.49 -4.87 -1.51 1.91 2.38 0.98 0.63 -1.04 -1.1 -2.88 -0.09
-0.56 -0.85 -2.42 -4.09 -1.65 -1.73 -1.66 -0.32 1.47 1.78 -0.81 -0.53 0.7 0.45 -0.33 0.6
- - -2.55 -5.78 -3.45 -1.28 -4.83 0.18 1.91 2.75 0.78 0.86 - -3.02 - -
-1.61 -0.96 -0.58 -0.43 -0.16 -1.54 0.55 0.4 1.57 1.93 0.15 0.06 -2.31 -2.62 -3.06 -1.72
-0.39 -0.8 -1.74 -1.95 -1.44 -0.63 -0.29 -0.18 1.32 1.62 0.84 0.28 -0.21 -0.8 -1.33 -0.04
-0.19 -0.44 -1.18 -2.0 -2.04 -2.16 -2.17 -1.36 1.56 1.06 -0.52 -0.66 0.36 0.25 0.41 1.29
-0.4 -1.45 -1.65 -1.39 -0.58 -0.57 -0.36 0.29 1.28 1.63 -0.01 -0.59 0.2 -0.42 -1.56 0.49
- - -2.21 -2.29 -5.08 - -3.3 - 1.66 2.99 1.79 -0.12 - - - -
-0.05 -1.56 -1.69 -1.28 -0.71 -0.45 0.36 -0.4 1.45 1.44 0.49 0.22 -0.43 -0.81 -1.08 -0.34
-0.06 -1.1 -1.92 -2.0 -1.87 -1.86 -0.32 0.47 1.5 1.69 -0.2 -0.44 -0.08 0.03 -0.28 -0.21
-0.01 -0.37 -1.84 -2.18 -1.75 -1.4 -0.2 0.87 1.49 2.03 0.22 0.25 -1.72 -2.03 -1.94 -1.74
-1.96 -0.81 -1.42 -2.78 -0.35 -0.63 - - 2.43 2.32 0.84 -0.15 - -2.72 - -
-0.18 -1.18 -1.18 -0.94 -0.53 -0.06 -0.06 -0.13 1.15 1.58 0.35 -0.34 -0.12 -0.78 -0.75 -0.32
-2.38 -1.4 -2.01 -1.92 -2.56 -1.36 -1.09 -0.85 1.55 1.93 0.88 0.44 -0.06 -0.07 -1.34 0.13
-1.54 -1.02 -0.83 -0.32 -0.23 0.26 -0.22 -0.16 2.08 1.68 0.6 -0.24 -5.78 -4.96 -3.75 -4.05
0.35 -0.82 -2.99 -2.79 -2.37 -1.85 0.14 0.42 1.41 1.64 -0.2 -0.63 0.13 -0.28 -0.38 -0.0
0.12 0.81 -3.25 -3.19 -2.48 -2.32 -1.39 0.42 2.18 2.05 -0.89 -1.77 -1.09 -1.91 -1.82 -1.5
-0.06 -1.09 -2.83 -2.44 -1.89 -0.97 -0.18 0.11 1.72 1.69 0.19 -0.75 -0.39 -0.48 -0.57 0.12
-1.12 -1.17 -1.74 -1.54 -2.56 -2.1 -1.57 0.88 1.6 1.89 -0.98 -1.04 -0.02 0.07 -0.04 0.18
-6.49 - -2.0 -0.55 0.07 -0.27 -2.02 -1.43 2.11 2.65 0.35 -0.58 -6.11 - -5.14 -
0.53 -4.24 -3.3 -4.97 -3.0 -3.54 -1.97 -0.54 2.0 2.61 1.25 -0.5 - -4.49 - -
- -3.03 - - - - - -2.76 2.49 2.4 1.8 0.15 - - -2.17 -
-1.06 -0.19 -0.95 -0.51 -0.72 -0.84 -2.19 -0.92 1.17 1.96 0.97 -0.79 0.04 -0.72 -1.68 -0.17
-0.24 -1.41 -0.66 -0.58 -0.57 -0.23 -2.0 0.1 1.78 1.5 -0.81 -0.35 -0.07 -0.51 -0.96 -0.28
- - -3.78 -3.93 -2.75 -1.11 -4.55 -1.47 0.96 0.5 -4.6 -7.03 1.83 1.72 0.48 1.67
-0.11 -0.88 -3.25 -4.1 -2.95 -2.77 -0.58 0.28 1.21 1.32 -0.49 -0.49 0.48 0.92 0.03 0.72
- -5.78 -4.26 -2.61 - - -4.35 -3.27 -0.61 0.06 -0.7 -2.13 2.01 1.53 0.8 2.14
-4.18 -4.14 -3.56 -2.47 -3.29 -2.32 -1.94 -0.49 1.54 2.69 1.58 0.51 -2.25 -3.53 -4.73 -2.17
- -8.63 -4.01 -2.86 -0.88 0.25 -0.77 -0.21 2.15 2.4 0.82 0.14 - -6.28 - -6.31
-0.45 -1.21 -1.33 -0.79 -3.09 -3.26 0.17 -0.61 1.29 1.91 0.65 0.73 -0.4 -0.77 -1.82 -0.34
0.48 0.04 -2.68 -1.82 -1.63 -2.01 0.1 0.35 1.79 1.63 0.07 0.04 -1.38 -1.66 -1.34 -1.04
-0.6 -0.1 -3.23 -2.39 -2.44 -2.33 0.14 -0.33 1.37 1.56 0.12 0.27 -0.1 0.06 -0.08 0.12
0.11 0.32 -2.03 -2.13 -1.36 -0.56 -0.66 0.68 1.49 1.8 -0.76 -1.15 -0.7 -0.54 -1.34 -0.21
-0.6 -3.1 -3.11 -2.89 -2.25 -1.74 -0.16 -0.11 0.13 2.31 -0.27 -1.18 0.65 0.04 -0.47 0.99
-2.74 -1.63 -1.45 -0.99 -0.07 -1.21 0.44 0.03 1.52 1.85 0.18 0.33 -0.54 -1.35 -1.97 -0.52
-7.67 - - - -1.1 -0.61 -2.22 -2.15 1.83 2.2 0.75 -0.84 0.47 -0.48 -2.02 0.76
-0.62 -1.58 -1.49 -1.03 -0.63 -0.42 -1.11 -1.31 1.21 2.24 0.67 -0.29 -0.11 -1.27 -2.0 -0.2
-0.45 -1.33 -2.9 -2.9 -2.45 -2.06 -0.39 0.63 1.48 1.85 0.15 -0.98 0.51 -0.22 -1.1 0.13
-1.07 -0.24 -1.43 -0.45 -0.85 0.13 -0.51 -0.72 1.91 1.6 -0.82 -2.03 -0.22 -0.56 -1.19 0.05
-5.21 - -4.39 -2.06 -1.94 0.51 -0.02 -1.02 2.54 1.99 -2.98 - -0.26 -2.58 -3.09 0.56
0.42 -0.39 -1.65 -1.51 -0.69 -1.12 -1.0 0.35 1.79 2.01 -0.87 -0.27 -1.29 -1.72 -2.0 -0.86
- - - - - - - 0.33 1.11 1.43 - - 2.37 - - 2.24
-0.38 -1.33 -2.94 -2.53 -2.67 -2.56 -0.75 0.56 1.12 1.41 -0.23 -0.76 0.61 0.9 -0.22 0.68
-0.4 -0.68 -0.97 -0.65 -0.45 -0.79 -0.19 -0.62 0.34 0.17 -0.09 0.08 0.89 0.64 0.27 0.7
- - -3.35 -3.76 -2.85 -1.95 -3.1 0.55 2.19 2.38 1.53 0.2 - - -3.79 -
0.41 -2.65 -2.32 -2.32 -5.06 -4.65 -2.04 -1.18 1.82 1.53 -0.71 -1.42 1.06 0.51 -0.43 0.77
-3.22 -1.25 - - -3.06 -5.82 - -2.38 1.42 3.16 0.64 0.8 - - -1.89 -
-1.24 -1.18 -3.12 -3.37 -2.67 -3.25 0.25 -0.33 1.09 1.55 0.57 -0.31 0.96 0.35 -1.01 0.68
-0.02 -0.19 -0.57 -0.28 -0.97 -0.87 -0.03 -0.34 1.54 1.21 0.46 0.07 -0.98 -1.34 -1.47 -0.13
-2.41 -0.33 -2.88 -1.9 -1.12 -1.81 -1.22 0.17 2.04 2.09 -0.03 0.19 -0.6 -2.05 -1.16 -1.11
-0.46 -0.53 -1.32 -1.03 -0.56 -0.58 0.35 0.78 1.52 1.7 -0.06 -0.28 -1.46 -1.71 -1.82 -1.03
-0.01 0.13 -1.12 -0.82 -0.94 -0.4 0.0 -0.19 1.34 0.99 0.49 0.42 -0.86 -0.84 -1.02 -0.2
0.19 -0.96 -0.83 -0.85 -1.74 -0.94 -0.18 -0.37 1.31 1.43 0.75 0.49 -0.67 -0.98 -0.82 -0.35
-0.1 -2.02 -1.97 -1.46 -1.13 -0.49 -0.24 -0.26 1.28 1.31 0.26 -1.08 0.49 0.03 -0.43 0.69
-0.66 0.08 -1.43 -1.34 -0.69 -0.33 -0.07 0.42 1.33 1.33 0.18 0.27 -0.68 -0.67 -0.86 -0.59
-10.73 - -4.15 -4.32 -5.98 1.02 -1.16 0.1 1.98 2.38 0.73 0.63 - - - -
-1.27 -0.16 -7.81 -4.31 -8.68 - -7.49 -5.74 1.5 1.52 0.29 -3.86 1.88 -1.2 -4.93 1.8
- - -5.64 -4.73 0.29 -2.68 -0.1 -1.63 2.09 2.36 1.19 0.53 -4.73 -4.24 -3.76 -4.85
-0.21 -1.17 -2.43 -2.35 -0.96 -0.69 -0.03 0.7 1.33 1.68 0.42 -0.13 -0.37 -0.56 -1.93 -0.18
-4.07 -3.46 -1.85 -1.63 -1.77 -0.22 -2.59 -1.85 1.93 1.96 1.02 -0.4 -0.69 -1.36 0.45 -0.35
-5.3 - -3.17 -3.12 -2.71 -2.41 -2.93 -0.51 2.43 2.63 1.0 -0.0 - -6.88 - -
-4.58 - -3.66 - -3.54 -3.09 -1.54 1.06 2.01 2.63 1.25 -0.6 - - - -
-1.73 -2.55 -1.34 -1.14 -1.65 -1.08 -0.89 -0.16 1.7 1.53 0.31 0.4 -0.16 -0.08 -0.24 0.1
- - - - - - -0.68 0.91 1.13 2.59 0.74 0.16 -0.19 -1.16 -3.61 0.1
-0.39 -1.23 -2.08 -1.78 -1.4 -0.73 -0.14 -0.57 1.19 1.67 0.66 0.15 0.02 -0.3 -1.1 0.35
-0.36 -0.63 -2.02 -2.65 -1.45 -1.26 -0.27 0.17 1.4 1.68 -0.18 -0.4 0.06 0.01 -0.27 0.12
-4.34 - -0.1 -2.23 -1.11 -0.43 -3.23 0.36 1.53 2.68 1.01 -0.19 - - - -
0.27 -0.37 -2.29 -2.28 -1.45 -1.64 -1.0 -0.26 1.64 1.9 0.22 0.08 -0.45 -0.85 -1.28 -0.26
- - - - - - - - 2.23 2.7 0.74 1.64 - - - -
-0.11 -1.44 -4.42 -2.3 -6.09 -3.8 -0.8 0.42 1.82 1.89 1.06 -0.41 -0.79 -0.85 -0.88 -0.52
0.34 -0.29 -0.93 -0.34 -0.53 -0.04 -0.47 0.02 1.08 1.22 0.2 -0.03 -0.31 -0.85 -1.75 -0.04
-0.09 -0.35 -0.89 -0.44 -0.56 -0.27 -0.03 -0.86 1.16 1.16 0.59 0.31 -0.26 -0.76 -1.16 -0.19
-1.42 -1.01 -2.84 -2.99 -2.09 -1.82 0.33 0.34 2.17 2.15 -0.31 -1.31 -1.0 -1.14 -1.47 -1.42
- - - - - 0.86 - -0.14 3.08 2.28 - - - - - -
0.44 -0.86 -2.54 -2.52 -2.14 -1.5 -0.43 0.19 1.76 1.83 -0.42 -1.19 -0.3 -0.31 -0.31 -0.5
-1.29 -1.53 -2.39 -2.25 -1.8 -1.25 0.6 0.45 1.42 1.86 -0.1 -0.99 0.24 -0.48 -1.44 0.29
-0.21 -0.41 -1.2 -1.4 -1.22 -1.11 0.22 0.09 1.4 1.26 0.25 -0.3 -0.09 -0.77 -0.01 -0.18
-2.87 -3.47 -2.29 -1.82 -2.4 -0.53 -3.16 0.42 2.24 2.21 0.44 -0.2 -1.76 -1.76 -1.88 -0.98
0.49 0.0 -2.21 -1.31 -1.96 -1.42 -0.04 -0.42 1.94 1.45 0.67 0.62 -2.24 -2.17 -2.96 -1.48
-0.73 -1.52 -1.55 -1.74 -1.28 -0.48 -0.01 -0.29 0.96 2.26 0.29 -0.72 -0.28 -0.67 -0.81 -0.21
0.47 -2.3 -3.44 -3.3 -3.73 -2.57 -1.99 -0.65 0.82 2.48 -0.49 -1.97 0.28 0.42 0.03 0.3
-0.07 -0.32 -0.43 -0.33 -1.32 -0.62 -0.08 -0.36 0.92 0.92 0.24 0.16 -0.33 -0.16 0.07 0.16
-0.02 -1.78 -2.3 -2.49 -1.49 -0.9 -0.24 0.11 1.55 2.05 0.16 -0.43 -0.36 -0.89 -1.18 -0.27
-2.15 -4.0 -1.88 -1.66 -1.21 -0.07 -0.91 0.59 1.85 2.39 0.45 -1.5 -1.67 -1.55 -3.28 -1.38
0.17 -0.46 -1.52 -0.93 -1.08 -0.32 -0.24 -0.64 1.75 1.63 0.01 -0.64 -0.62 -1.14 -1.47 -0.11
-1.38 -0.57 -1.2 -0.83 -1.04 -0.57 0.06 -0.14 1.2 1.72 0.79 0.68 -1.11 -0.96 -1.39 -0.86
-0.42 0.11 -1.41 -0.67 -1.21 -1.01 0.25 -0.28 1.24 1.57 0.62 0.5 -1.0 -1.27 -1.51 -0.55
-0.29 -0.32 -2.34 -2.28 -1.88 -1.6 -0.52 0.26 1.79 1.77 0.51 0.58 -0.92 -1.34 -2.24 -0.87
0.11 -0.25 -2.83 -2.36 -1.41 -1.84 -0.49 0.78 1.7 1.84 0.43 -0.37 -0.75 -1.51 -2.32 -0.83
-1.06 -1.33 -1.94 -2.49 -1.97 -2.06 0.08 0.74 1.41 1.73 0.07 -0.49 0.14 -0.4 -0.51 0.24
-0.13 -0.47 -1.48 -1.98 -0.73 -0.77 -0.41 0.24 1.12 1.24 -0.3 -0.72 0.4 -0.04 -0.26 0.62
-0.88 -2.62 -2.55 -3.22 -2.14 -2.39 0.51 0.0 1.14 1.57 0.24 -0.71 0.26 0.46 -0.15 0.79
-0.08 0.07 -1.22 -0.93 -0.69 -1.46 -0.02 -0.16 1.13 1.25 0.1 -0.21 0.38 -0.74 -1.26 0.45
0.15 0.19 -2.74 -2.56 -0.93 -1.11 -1.08 0.62 1.92 2.14 -0.73 -1.31 -1.79 -1.89 -2.48 -1.0
-3.57 -0.88 -1.45 -1.42 -1.0 -0.01 -0.18 -0.22 2.26 1.76 0.12 0.16 -1.62 -1.61 -3.01 -1.99
0.1 -1.11 -2.23 -2.53 -2.08 -1.5 -0.96 0.63 1.33 1.46 -0.36 -0.98 0.49 0.23 -0.22 0.51
-4.66 - -2.31 - -4.76 -1.62 - -0.76 1.97 2.59 1.37 1.15 - -4.08 - -
-1.04 -1.29 -1.19 -0.9 -0.92 -0.29 -0.74 1.05 1.6 2.02 -0.18 -1.14 -1.11 -2.25 -1.21 -0.75
-0.53 -1.71 -1.97 -1.55 -1.7 -1.03 0.19 -0.05 1.46 1.75 -0.37 -0.97 0.43 -0.19 -0.52 0.25
-1.24 -3.09 -0.96 -0.61 -3.24 -2.41 -0.5 -0.1 1.49 1.98 0.44 0.79 -0.62 -1.43 -1.44 0.17
-0.16 -1.43 -1.48 -1.1 -1.28 -1.25 -1.13 0.03 2.1 2.19 -0.2 -0.24 -1.86 -2.25 -2.64 -1.28
0.09 -0.02 -0.66 -0.29 -0.41 -0.66 0.12 0.45 1.27 1.13 -0.22 -0.73 -0.69 -0.93 -1.16 0.02
-0.43 -0.53 -1.88 -1.94 -1.65 -1.56 -0.34 -0.2 0.82 1.13 0.2 -0.41 0.77 0.47 -0.23 0.94
-0.28 -1.23 -2.45 -2.58 -1.1 -0.84 -0.74 -0.12 0.81 0.95 -0.26 -0.63 0.91 0.61 0.22 1.09
0.47 -0.52 -1.09 -0.8 -2.07 -1.22 -0.93 0.11 1.96 1.93 -0.73 -0.89 -1.31 -1.01 -1.42 -1.07
-0.0 0.17 -1.26 -1.88 -1.24 -1.12 -0.53 -0.21 1.55 1.57 -0.64 -0.18 -0.23 -0.57 -0.46 0.11
-0.04 -0.33 -2.41 -1.99 -1.01 -1.06 -0.75 -0.06 1.64 1.95 -0.1 -0.0 -0.54 -0.94 -1.25 -0.46
0.74 -2.58 -0.86 -1.27 -1.27 -1.32 -1.39 -0.7 1.5 1.52 -0.77 -0.28 0.01 -0.26 -0.81 0.91
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Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.