Heatmap: Cluster_5 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.92 3.69 - - - -3.17 - - - - - - - -0.35 0.72 -
-0.54 3.9 - - -2.41 - -6.21 -3.38 -3.39 - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- -5.35 - - - - - -12.21 - - - - 2.28 2.11 1.01 2.26
-1.42 3.96 -7.22 -5.25 -6.26 -4.81 -6.67 -6.4 - - - - -7.48 -8.57 - -7.6
-1.82 3.97 - - - - - - - - - - - - - -
-0.7 3.88 - - - - - -6.09 - - - - - - -0.53 -
-7.74 3.9 - - - - - -9.6 -1.01 -3.99 - - -2.44 -3.32 - -2.35
-4.56 3.88 -6.93 - -3.99 -5.37 -5.6 -0.37 -2.89 -3.29 -6.26 -5.36 -5.02 - - -
-3.98 3.87 -5.6 -6.27 -3.47 -4.41 -2.63 -1.27 -6.04 -3.81 -3.04 -5.05 -2.1 -5.78 -4.71 -4.47
-4.71 3.83 - - - - - -0.63 -2.77 -1.71 - -4.36 - -4.1 -1.03 -
-3.23 3.92 - - - -4.46 -4.09 - - - - - - - -0.54 -
-2.01 3.98 - - - - - - - - - - - - - -
- 3.95 - - - - - - -1.59 -2.12 - - - - - -
-6.34 3.98 -6.49 - - - -7.17 - -3.58 -3.84 -4.22 - - - - -
-0.97 3.9 -2.59 -4.07 -3.53 -5.02 -4.07 - -2.96 -6.36 - - - -6.17 - -5.2
-1.15 3.88 - -7.59 - - -8.03 -10.62 - - -7.24 -8.34 -2.51 -2.37 -2.25 -2.16
-2.1 3.91 - - - - - -6.15 -2.36 -1.3 - - -2.59 - - -
- 4.0 - - - - - - - - - - - - - -
- 3.96 - - - - - - -1.06 - - - - - - -
- 3.19 - - - - - -1.38 - - - - 0.4 - 2.37 -
-1.5 3.29 - - - - - -8.38 - - - - 1.04 1.21 -0.52 -0.36
- 1.2 - - - - - -3.39 - - - - - - 3.77 -
-3.46 3.9 - - - - - - - - - - - -3.2 -0.13 -
-2.26 3.98 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-4.84 3.98 - -3.71 -3.91 - - - - - - - - - - -
-3.71 3.92 -4.3 - -5.75 - -1.58 -1.43 - - - - - -6.07 - -
-2.68 3.99 - - - - - - - - - - - - - -
-3.35 3.96 - - - -3.98 - - -3.37 -2.89 - - - - - -
-3.28 3.96 - - - - - - - - - - - -1.51 - -
-0.46 3.88 -5.28 - -4.15 -2.73 -5.95 -7.93 - - -4.61 -4.72 -3.0 -4.38 - -
-2.8 3.96 -5.33 - -5.8 -4.62 -5.01 -6.79 -6.31 -5.26 - - -3.01 -6.11 - -
- 4.0 - - - - - - - - - - - - - -
- 3.96 -6.83 -5.76 - - -2.22 -2.15 - - - - - - - -
- 3.7 - - -2.8 - -3.6 -1.79 - - - - -2.02 -0.79 0.54 -2.14
-1.69 3.97 - - - - - - - - - - - - - -
-1.88 3.88 - - - - - - -2.5 - - - - - -0.19 -
-0.92 3.93 - - -5.13 - - - - - - - -4.35 - -3.37 -3.47
-1.88 3.98 - - - - - - - - - - - - - -
- 0.28 - - - - - -3.99 - - - - 1.9 0.06 -0.45 3.21
-1.15 3.95 - - - - -5.16 -3.45 - - - - - - - -
-3.61 3.81 -3.38 -3.14 -3.83 -3.24 -2.69 -1.35 -0.8 -1.98 -5.1 -5.09 - -6.95 - -4.39
-6.79 3.95 -3.97 - - - -6.64 -2.42 - - - - - -5.15 -2.08 -
-2.41 3.88 - - - - - -4.21 -1.92 - - - - -2.71 -0.64 -
-4.37 3.67 -1.69 -1.93 -1.73 -3.02 -3.5 -0.5 -2.24 -0.97 -4.01 -1.86 -3.47 -3.92 -3.84 -2.72
- 3.78 - - - - - - -2.43 -2.37 - - - - 0.89 -
-2.15 3.86 - - - - - -0.7 - - - - - -0.55 - -
-3.74 3.95 - - - - -4.57 - - - - - - -2.5 -2.01 -
- 3.99 - - - - - - -2.81 - - - - - - -
-2.73 3.78 - - - - -5.32 -4.52 - - - - -1.74 -0.14 - -0.28
- 3.79 - -1.67 - - -1.86 -0.98 - - - - -2.09 -3.18 -1.11 -2.21
-3.68 3.95 - - - - - -2.58 - - - - - - -1.56 -
-1.53 3.44 - - - - - - - - - - - - 2.26 -
-3.09 3.97 - - - -3.85 - - - - - - - -3.01 - -
-2.65 3.66 - - - - -4.33 -1.41 -2.01 - - - -0.75 -0.26 -0.77 -0.87
-4.45 3.8 -1.59 -2.43 -3.51 -3.68 -2.32 -0.91 - - -2.98 - -1.73 -2.83 - -
-5.54 3.51 - - -7.63 -6.8 -5.11 -3.36 -5.19 - -5.1 -4.88 1.5 -0.92 -4.87 0.01
-8.91 3.98 -6.14 -4.22 - -7.18 -5.49 -8.79 - - -7.48 -6.58 - -7.32 -4.25 -
-2.11 3.81 - - -4.99 -5.55 -5.61 -0.68 -3.51 -3.75 -3.71 -3.2 -2.62 -2.54 -5.23 -1.68
-2.9 3.76 - - - - -3.97 -0.6 -1.13 -1.65 - -4.31 - -0.89 -1.99 -
-1.57 3.8 - - - - - -2.86 - - -2.81 - -1.6 -1.11 -0.63 -
-2.56 3.98 - - - - - - - - - - - - - -
- 3.91 - - - -2.71 -4.46 -1.69 -1.22 - - - - - - -
-1.6 3.68 -5.87 -3.21 - -4.31 -4.96 -1.93 -1.95 -3.22 -4.18 -4.29 -0.79 -0.47 -2.99 -1.09
-1.72 3.95 - - - - - - - - - - - -2.42 - -
-2.46 3.83 -2.62 -3.87 - -4.82 -2.56 -0.24 -1.88 -3.56 - - - - - -
-2.78 3.56 -1.73 -0.83 -2.3 -1.87 -1.78 -1.15 -0.79 -0.78 -2.65 -1.74 -3.5 -3.46 -3.76 -3.34
-1.42 3.97 - - - - - - - - - - - - - -
-3.14 3.15 - - - - - - - - - - -0.35 -1.45 0.62 2.11
- 3.98 - - - - - - -4.52 -4.47 - - - - -3.29 -
-2.4 3.98 - - - - - - - - - - - - - -
-2.87 3.9 - - - - - - -1.21 - - - - -1.05 - -
- 3.91 - - - - - -2.12 - - - - - -2.02 -0.95 -
-2.33 3.97 - - - - - - - - - - - -2.63 - -
-3.57 3.96 - - - - - -5.09 - - - -4.19 - -2.36 - -2.97
-2.16 3.75 - -2.6 - - - - - - -2.26 - - - 0.96 -
-4.48 3.99 -3.59 - - - - - - - - - - - - -
- 3.94 - - - - - -0.74 - - - - - - - -
-4.08 3.94 -4.24 - - - - -0.86 - - - - - - - -
- 3.9 -2.94 - - - - - - - - - - - -0.06 -
- 4.0 - - - - - - - - - - - - - -
-4.56 3.99 - - -3.58 - - - - - - - - - - -
-3.1 3.96 -5.5 -3.6 -4.66 -4.96 -5.26 - -4.27 -6.33 -7.88 -5.29 - - -6.71 -6.22
-6.84 1.09 - - - - - -6.24 -8.67 -7.61 - - 2.69 1.77 -2.64 1.93
-1.5 3.95 - - - - - - - - - - - - -2.11 -
-5.2 3.96 - - - - - -4.05 - - - - -3.48 -4.57 -2.5 -
-6.93 4.0 - - - -8.67 - -11.29 - - - - - - -7.33 -
-1.74 3.88 - - - - - - - - - - - - -0.03 -
-2.97 3.91 - - -4.33 - - - - - - - - -1.32 -1.57 -
- 3.88 - - - - - - - - - - - - 0.41 -
- 4.0 - - - - - - - - - - - - - -
- 3.98 - - - - - -4.72 -3.68 -3.62 - - - - - -
- 3.99 - - - -5.25 - - -3.64 - -4.54 - - - - -
-3.21 3.87 - -5.81 - - -3.35 -2.37 -3.23 -3.18 -3.88 - -2.42 -2.42 -4.26 -2.18
- 4.0 - - - - - - - - - - - - - -
- 3.75 - - - - - - -1.18 - - - - - 1.05 -
- 3.97 - - - - - - - - - - - - -1.47 -
-9.33 3.97 - - -8.42 - - -4.99 -2.82 -2.84 - - - - - -
- 3.91 - - - - - - - - - - - -0.12 - -
-4.63 3.94 -8.17 -7.8 -7.93 -7.07 -5.59 -1.9 -3.66 -5.08 -5.65 -6.07 -4.33 -4.55 -5.27 -4.19
-1.7 3.86 - - -3.62 -3.77 -1.83 -3.06 -4.15 -4.09 - -5.16 -2.84 -3.93 - -1.96
- 3.99 -3.95 - - - -4.62 - - - - - - - - -
- 4.0 - - - - - - - - - - - - - -
-0.53 3.83 - - -3.78 - - -3.4 - - - - - - -1.02 -1.12
- 3.99 - - - - - - -3.73 - - - - -3.51 - -
-0.98 3.55 - - - - - -5.22 - - - - - -0.66 - 1.64
- 4.0 - - - - - - - - - - - - - -
- 3.92 - - - - - -0.3 - - - - - - - -
- 3.95 - - - - - - -0.8 - - - - - - -
-2.67 3.57 - - - - - - - - - - - 2.0 - -
-0.7 3.94 - - - - - - - - - - - -7.54 -4.47 -
-0.89 3.89 -5.16 -7.81 -5.21 -8.06 -12.52 -4.8 -4.64 -1.86 -2.56 -4.17 -8.61 -8.33 -9.96 -7.74
-1.85 3.95 - - - - -2.14 - - - - - - - - -
-2.17 3.65 -6.18 -5.74 -9.76 -7.91 -10.56 -2.68 -7.29 -9.24 - - -0.23 -0.4 -1.0 -0.18
- 2.22 - - - - - -1.96 - - - - 0.03 1.74 1.01 2.23
-1.35 3.96 - - - - - - - - - - - - - -
-4.78 3.69 - - - -4.04 - -2.13 - - - - -2.09 -0.38 -0.11 -0.21
-0.92 3.92 - - - - -4.18 -5.36 - -3.3 - - - - -2.63 -
-2.78 3.97 - - - -5.32 - - - - - -5.69 -4.4 - - -3.52
- 3.96 -4.48 -2.37 -5.68 - - -2.52 - - - -6.21 - - - -
-9.09 3.99 -6.68 -7.12 -10.14 -7.97 -9.93 -4.26 -5.03 -7.3 - - -6.35 - -6.38 -
- 3.32 - - - - - -0.78 - - - - - - 2.45 -
- 4.0 - - - - - - - - - - - - - -
-3.73 3.99 -3.9 - - - - - - - - - - - - -
-5.53 3.92 -6.9 -6.94 -3.97 -7.34 -9.76 -6.47 -1.93 -2.48 -8.46 -3.2 -7.2 -8.29 -2.91 -6.24
-0.99 3.79 - - - - -1.87 -5.44 - - - - - -1.97 0.1 -
- 4.0 - - - - - - - - - - - - - -
-6.43 3.97 -5.23 -4.64 -7.78 -4.92 -8.41 -2.51 - - -8.65 -8.02 -7.41 -6.65 -7.02 -
-4.1 3.97 - - - - - -3.37 - -2.67 - - - - - -
-0.82 3.86 - - - -3.33 - -3.65 - - - - - - -0.42 -
-3.29 3.95 - - - - - -6.1 - - - -4.42 -1.52 - - -
-2.02 3.86 -3.93 -4.18 -5.8 -4.38 -3.38 -1.31 -3.23 -3.06 -4.51 -5.36 - -3.53 -3.04 -4.73
-1.04 3.74 - - - - - - - - - - - -1.3 0.77 -
- 3.96 - - -6.91 - - -7.69 -1.35 - - -6.49 - - -4.16 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.