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Heatmap: Cluster_163 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-5.15 1.3 0.25 -0.06 -0.95 0.82 0.14 -0.81 0.45 -1.43 1.26 1.5 -2.42 -3.68 - -2.47
-1.71 0.97 -0.59 0.47 -0.88 0.64 -0.5 -0.99 0.77 -0.1 0.85 0.23 -0.44 -1.03 -1.58 0.25
-0.74 0.95 0.06 0.66 0.44 0.49 0.03 -0.81 0.55 0.33 0.37 0.24 -1.33 -1.95 -2.55 -1.02
- 2.03 0.56 -0.41 0.35 1.4 1.02 - - -1.08 0.55 0.85 - - - -
- 1.67 -1.23 2.11 1.9 0.74 - - - - 1.03 -0.66 - - - -
-0.94 1.51 -0.34 -0.2 0.08 0.34 -4.17 -1.78 -0.22 1.82 -0.55 -1.44 -0.19 -0.1 -0.9 -0.94
-0.23 -0.42 -0.75 -0.92 0.6 0.11 0.15 -1.35 1.43 1.28 0.08 -0.15 -0.65 -0.53 -1.35 -1.45
-3.38 1.96 -0.29 0.71 -1.14 -0.38 -0.76 -4.61 -1.83 1.57 0.67 1.52 -7.52 -8.61 - -
-1.04 0.84 0.21 0.49 0.24 0.43 -0.17 -1.59 0.72 1.15 0.05 0.49 -2.0 -1.89 -2.79 -1.24
-1.31 0.6 0.29 0.62 0.42 0.39 -1.21 -0.68 0.78 0.38 0.7 0.56 -1.3 -2.64 -1.74 -0.67
-6.13 0.77 0.5 0.41 0.11 0.78 -0.68 0.05 0.48 0.34 1.14 1.09 -7.55 -7.07 -5.58 -4.51
-2.32 0.38 - - -2.82 0.76 -0.61 -1.84 1.61 0.34 -0.62 - 1.29 0.19 -0.06 1.16
-0.24 1.17 0.58 0.41 0.74 0.78 -1.56 -0.48 0.1 0.34 0.12 0.21 -2.14 -1.9 -2.21 -1.52
-8.16 -4.79 -7.35 -6.28 -6.48 -5.16 -8.61 -12.59 -6.55 -6.3 -6.68 -6.05 2.08 1.77 1.89 2.17
-3.71 0.59 0.16 0.89 -0.81 1.32 -1.39 -2.05 0.66 0.79 1.7 0.05 -4.43 -4.53 -5.11 -4.27
-0.64 0.93 0.44 0.47 0.52 0.9 -0.47 -1.68 0.46 0.64 0.47 0.14 -1.79 -2.17 -2.47 -1.85
-0.4 0.01 -1.0 -0.47 0.16 0.16 0.63 -0.17 0.72 0.75 -0.1 -0.58 0.39 -0.44 -1.4 -0.02
- 1.32 0.23 - - 0.19 -0.44 - - - - 0.78 - - 3.12 -
-1.28 1.55 -1.33 -1.53 1.25 1.99 -0.06 -1.28 -0.74 -0.95 0.34 -0.32 -2.98 -2.3 -1.48 -1.69
-0.35 0.78 -1.61 -1.32 0.73 -0.09 0.78 -2.24 1.11 1.54 -0.04 0.04 -1.67 -1.4 -2.28 -1.76
-2.79 1.1 0.62 1.76 1.07 0.91 -1.64 -1.92 - -1.32 1.41 0.19 - - - -
-0.64 0.7 -0.28 -0.35 0.09 0.18 -0.05 -1.03 0.49 0.81 -0.06 -0.01 -0.14 -0.37 -0.31 -0.21
-0.05 0.42 0.31 0.6 -0.13 0.07 0.23 -0.4 0.83 0.06 0.48 0.59 -1.44 -1.84 -1.95 -1.28
-0.13 0.91 -0.08 0.22 0.57 0.99 -0.75 0.6 -0.19 -0.7 0.74 0.53 -2.28 -2.75 -2.18 -1.56
-0.82 0.61 -1.02 -0.32 0.52 0.89 -0.38 -0.13 -0.95 -1.51 -0.51 -0.4 0.09 0.53 0.38 0.59
-3.83 1.27 -1.54 0.66 -2.17 -1.55 -1.96 -1.71 1.35 -0.6 1.25 0.75 0.36 -0.48 -0.99 -0.51
-2.27 2.56 - - 0.28 3.12 - - - - - - - - - -
-4.21 0.73 0.05 1.5 -0.96 0.25 -1.09 -0.43 2.07 -0.78 0.84 -1.27 -1.5 -2.6 - -
-4.01 0.49 0.72 -0.4 -0.73 1.43 0.57 0.68 0.24 -0.28 1.11 0.51 -3.73 -7.63 -3.98 -5.66
- - -0.94 1.72 - -0.97 0.39 1.64 - - 1.75 1.96 - - - -
-4.32 1.41 -1.16 -1.19 1.2 2.18 0.81 1.07 -3.63 -5.16 -0.8 -0.32 -3.16 -5.57 - -3.02
- - -0.96 -0.18 1.19 1.03 -0.72 -2.47 - 1.01 0.25 1.51 0.21 - 1.19 -
-3.35 0.17 0.24 -0.82 1.15 1.01 -0.24 -1.64 0.31 0.64 0.5 -0.14 -0.24 -0.53 -1.27 -0.84
-3.37 -6.28 -0.33 -0.65 -1.09 -1.07 -0.53 -0.07 -4.23 -3.58 -0.55 0.28 1.34 1.48 1.56 0.65
-1.24 -5.64 -1.38 -1.29 -0.56 -0.31 -0.54 -0.84 -0.7 -0.36 -0.95 0.29 1.96 1.38 -0.19 0.61
-1.52 0.91 0.08 0.71 -1.18 0.36 -1.68 -0.14 1.54 -0.19 0.02 0.51 -0.88 -1.45 -1.87 -0.45
- 1.9 0.5 -0.73 -1.97 1.71 -0.76 - - - - 1.85 - - 0.79 -0.31
-0.57 0.65 0.66 1.38 -0.45 -0.39 -1.06 -1.19 0.69 0.55 0.78 0.95 -3.57 -3.06 -2.95 -3.19
1.29 2.54 - 1.84 - 2.06 - - - - - - - - - -
- - - - - - - 2.25 - - - 3.49 - - - -
-1.21 1.94 -0.45 -0.7 0.77 2.61 -0.29 -5.26 - -0.99 -0.96 -0.48 - - - -
-1.37 0.57 0.31 0.57 0.45 0.0 -0.1 -0.2 0.77 0.46 0.56 0.54 -1.77 -1.76 -1.94 -1.4
- -0.35 - - -0.13 0.08 -2.54 -0.96 - - - - 1.89 1.31 0.06 2.42
- 1.61 -0.56 1.19 -1.01 1.15 -0.23 -1.48 - - - - 0.77 1.0 - 1.23
-0.39 0.56 0.28 0.21 0.27 0.03 -0.08 -0.69 0.34 0.28 0.49 0.59 -0.81 -1.0 -1.19 -0.51
-6.61 2.04 0.26 0.06 0.19 1.93 -1.37 - 0.47 -0.55 -0.58 0.22 - - -1.35 -
-0.81 0.47 0.12 0.5 0.04 0.08 -0.25 -0.22 0.49 0.4 1.02 0.34 -1.16 -1.13 -1.83 -0.86
-2.04 0.93 0.66 0.41 0.08 0.63 -0.85 -0.17 0.32 0.34 0.09 -0.33 0.16 -1.61 -2.99 -0.09
0.4 -0.36 0.22 2.14 - 0.19 - - 1.8 - 1.89 - - - - -
-0.7 0.77 -0.07 0.37 0.03 0.21 -0.27 -1.18 0.79 0.63 0.55 -0.03 -0.8 -1.25 -1.33 -0.19
-1.61 -0.65 -0.24 0.81 0.84 -0.43 0.15 -0.68 0.25 0.68 1.17 0.85 -1.33 -2.18 -2.94 -0.82
-1.45 0.44 -2.14 -3.95 1.49 0.05 0.17 -1.45 1.86 2.16 -3.6 -2.3 -4.55 -6.65 -3.0 -3.36
-2.38 -0.02 0.26 0.92 0.94 -1.74 0.29 -0.28 0.77 0.83 0.96 0.95 - -3.35 - -
-0.92 0.41 -0.67 -0.45 0.35 -0.16 -1.58 -0.48 0.74 0.51 1.66 0.95 -1.46 - - 0.06
-1.12 1.79 -1.42 1.92 0.19 1.14 -0.51 -0.92 0.55 0.23 -1.06 - - - - -1.96
0.19 0.86 -0.03 0.51 -0.04 -0.21 -0.75 -0.46 -0.13 0.45 0.34 0.49 -0.49 -0.92 -0.88 -0.43
-1.04 1.23 -0.47 -0.52 -0.28 0.73 -1.21 -0.73 1.37 1.07 0.41 0.37 -2.34 -2.62 -2.0 -1.59
-0.01 0.64 0.26 0.35 0.09 0.1 -0.31 -0.89 0.17 0.59 0.51 0.41 -0.88 -0.96 -1.36 -0.58
-3.86 0.93 0.19 0.28 0.68 1.1 -0.08 0.47 -0.17 -0.71 1.1 0.62 -2.62 -4.12 -3.89 -2.85
- 0.42 -0.61 -1.27 1.52 1.54 0.04 -2.26 - 0.03 1.06 -1.04 0.31 0.8 - -
- 2.77 - - 0.84 2.89 - - - - - - - - - -
-0.36 -0.18 -0.32 -0.04 -0.1 -0.18 -0.27 -0.41 -0.14 -0.24 -0.48 -0.25 0.68 0.56 0.5 0.45
-5.82 1.49 0.33 0.95 0.6 1.04 -1.73 0.14 0.04 -0.86 1.41 -0.41 -7.27 -9.37 - -6.07
-2.12 1.59 -0.6 -1.29 0.3 2.04 -0.05 -0.91 -4.9 -3.84 0.48 -0.35 -0.05 -1.21 -3.6 0.11
-1.09 0.36 -0.24 0.01 -0.25 -0.01 -0.3 -0.73 -0.7 -0.78 -0.15 -0.31 0.24 0.68 1.19 0.24
-1.44 0.27 0.23 0.55 0.54 1.28 -0.5 0.19 0.09 -0.7 0.99 0.62 -1.98 -2.94 -2.32 -1.76
- 1.28 - 0.15 1.27 1.96 - - -0.61 -0.55 - - - 0.64 1.71 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.