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Heatmap: Cluster_75 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.47 -0.16 1.3 1.45 0.22 0.68 -0.53 -1.01 -0.93 -1.15 -0.28 -0.36 -0.73 -1.04 -1.54 -0.82
0.33 -0.37 1.1 1.13 0.18 0.2 -2.65 -1.86 -3.95 -5.07 -1.74 -1.58 0.68 0.36 0.41 0.99
-4.87 1.24 1.92 1.68 1.09 0.82 -0.97 -1.99 -1.2 -2.32 -0.77 -0.42 - -6.8 - -
-0.64 0.84 1.44 1.15 0.68 0.19 -0.71 -1.17 -0.64 0.15 -0.58 -0.35 -1.39 -1.61 -1.46 -0.81
-8.28 -0.76 2.19 1.64 0.64 1.99 -0.33 -1.17 -1.81 -5.47 -3.26 -1.01 -7.21 - - -5.8
0.24 -0.04 0.65 1.0 0.58 0.44 0.32 -1.26 -0.46 -0.87 -0.34 -0.23 -0.06 -0.46 -1.1 -0.55
-1.13 -1.36 1.9 1.54 0.79 -0.24 -0.11 -1.49 -4.64 -4.69 0.66 0.41 -1.37 -1.79 -0.8 -1.3
-1.85 1.08 1.59 1.49 0.83 1.05 -0.98 -2.69 -3.71 -3.35 0.51 0.37 -2.41 -5.51 - -2.53
-5.3 1.34 2.51 2.13 0.49 -0.62 -0.8 -2.95 -2.7 -2.73 -2.56 -2.65 - -10.12 - -
-0.62 1.71 2.23 2.06 -5.05 -2.61 -0.69 0.43 -0.77 -1.43 -4.48 -4.0 - - - -
-1.63 0.72 1.61 1.22 0.12 1.2 -1.22 -2.58 -0.97 -3.93 -1.79 -1.47 0.31 -0.82 0.11 -0.82
-0.04 -0.68 1.44 1.61 0.68 0.21 -0.92 -0.83 -0.9 -1.89 -0.74 -0.73 -0.28 -0.51 -0.99 -0.41
-2.61 1.61 2.19 1.96 0.22 0.46 -0.76 -2.98 -1.95 -2.46 -1.7 -1.54 - - - -
-2.05 0.97 1.11 1.12 0.87 0.71 -0.08 -2.88 -1.3 -3.57 0.72 0.36 -2.31 -0.4 - -0.84
1.0 0.32 1.17 1.7 0.9 1.27 -1.25 -0.92 -1.55 -3.05 -0.84 -0.93 -5.4 -2.87 -1.76 -5.1
-5.27 0.39 1.27 1.3 0.17 1.18 -3.17 -2.76 -0.35 -2.03 -2.99 -2.36 0.3 0.41 -0.84 0.72
-1.95 0.55 1.69 1.63 0.07 1.37 -1.15 -1.43 -0.43 -0.6 -0.69 0.1 -3.53 -3.58 - -2.19
-1.91 1.31 1.57 1.25 0.18 1.01 0.77 -0.96 -0.68 -0.42 -0.78 -0.79 -8.57 -8.08 -7.59 -7.69
0.06 1.07 2.14 1.52 1.19 0.92 -1.52 -2.86 -3.1 -5.37 -3.16 -2.27 -4.09 -2.38 -2.53 -4.21
-1.09 0.27 1.57 1.49 0.95 0.68 -1.99 -0.4 -0.3 -0.08 -1.4 -0.04 -2.27 -2.55 -2.23 -1.78
0.84 1.44 2.19 2.07 -2.38 -0.54 - - - - -0.84 - - - 0.37 -
-6.95 -1.98 2.43 1.81 0.04 2.05 -0.01 -3.49 -4.93 -4.07 -2.53 -1.55 - -6.38 - -8.22
-0.38 0.78 1.62 1.04 0.23 -0.71 0.03 -0.38 -1.99 -2.93 -0.93 -0.47 0.14 -0.01 -1.01 -0.78
-2.2 0.75 2.11 1.5 1.05 0.84 -2.6 -1.88 -1.56 -2.41 -1.27 -0.77 -2.03 -1.43 -2.16 -1.8
- 1.42 2.21 1.67 0.06 0.7 -1.25 -0.52 - - 0.15 -1.77 - - - -1.6
0.73 -0.71 0.6 1.41 0.38 0.73 -1.0 -1.09 -5.9 -5.84 -2.9 -1.3 0.1 0.1 0.03 0.91
-0.42 1.01 1.34 1.18 0.31 0.06 -0.58 -1.27 -0.44 -1.2 -0.59 -0.28 -0.48 -0.95 -1.09 -0.51
-2.05 - 1.34 1.41 0.69 0.04 - - - - -1.58 - - - 2.23 1.54
0.29 -1.39 1.84 1.92 0.81 0.65 -3.99 -3.21 -1.78 -2.21 -5.47 -4.99 0.06 -0.77 -1.43 -0.05
0.89 1.46 2.26 1.5 0.94 0.64 -8.41 -6.92 - - -4.51 -3.19 -5.47 -5.46 -3.47 -
-2.11 1.3 1.8 1.02 0.4 1.13 -1.51 -3.01 -1.56 -1.46 -2.54 -1.75 -0.54 -0.65 -0.96 -0.29
-1.0 0.73 1.22 1.66 0.18 0.26 -1.98 -1.46 -0.26 0.32 -0.77 0.9 -1.56 -2.53 -3.43 -1.85
-1.41 -6.83 1.19 1.11 0.69 -1.11 -0.08 -1.1 -3.94 -5.84 -1.87 -0.59 1.03 0.71 -0.19 1.08
-6.16 0.52 1.87 1.22 0.56 -0.95 -1.17 0.13 -2.67 -1.78 -2.05 -2.77 0.04 -0.45 -1.93 1.13
-2.99 1.06 2.06 1.57 1.07 0.77 -7.75 -6.18 -0.33 0.4 -1.53 -1.6 -7.75 -7.27 -5.78 -6.88
0.81 0.42 1.91 2.09 1.25 0.99 -4.27 -6.03 -6.84 -8.1 -1.96 -2.71 - -6.91 -6.83 -7.93
0.38 -0.45 1.71 1.58 0.81 0.5 -1.29 -0.38 -1.7 -1.09 -0.63 -0.47 -1.88 -1.59 -2.23 -1.31
-0.09 0.61 1.23 1.13 0.82 0.79 -1.01 -1.75 -0.37 -1.06 0.21 0.19 -1.62 -1.87 -2.09 -1.6
0.42 0.26 1.75 1.87 1.24 -0.42 -1.61 -1.62 -2.04 -4.74 -3.48 -2.58 -0.54 -0.9 -1.39 -0.85
-8.89 1.35 2.0 1.59 0.4 1.44 -0.03 -1.01 -2.65 -6.49 -1.79 -1.19 -5.2 - - -
- 2.09 2.13 2.19 0.59 -2.78 - - - -1.39 - - -1.54 -3.37 -1.91 -4.08
-1.2 0.29 1.44 1.54 0.71 -0.55 -1.03 -0.68 -1.18 -1.0 -1.2 -1.1 -0.14 -0.35 -0.32 -0.05
-3.9 1.11 1.88 1.58 1.14 0.41 -0.54 -2.32 -0.25 -1.69 -1.11 -0.76 -2.68 -1.92 - -4.12
1.13 -0.89 0.77 1.82 1.56 0.47 -0.38 -4.88 -3.76 -4.7 -1.5 -0.49 -1.41 -0.86 -1.43 -1.21
0.78 -3.5 1.46 1.56 0.8 -0.0 -3.79 -3.38 -2.68 -4.22 -1.85 -3.7 0.63 0.3 -0.87 0.77
-5.93 1.42 2.0 1.1 1.33 -0.64 -3.32 -3.48 -2.09 -2.29 -1.17 -0.29 -0.83 -3.52 0.23 -1.78
-4.22 -2.01 -1.11 -1.71 -2.37 -2.18 -4.43 -4.97 - - -5.91 -4.69 1.13 1.72 2.44 1.79
-1.02 0.29 1.52 1.94 -0.91 -2.13 -1.39 0.59 0.74 0.87 -0.81 -2.85 -1.1 -2.72 - -3.3
-0.16 1.47 2.11 1.92 0.48 1.03 - - -2.05 -3.99 -3.95 -1.25 - - - -
-1.58 0.05 1.77 1.83 0.5 0.2 -2.76 -1.74 -0.92 0.36 -0.09 0.29 -1.17 -2.27 - -
-2.0 1.27 1.77 1.92 -0.26 0.52 -4.26 -0.97 -2.02 -2.23 -0.12 0.31 -3.26 -3.36 -0.97 -
-1.07 1.32 2.1 1.59 1.19 -0.8 -1.14 -1.53 -0.85 -0.27 -1.91 -1.38 - - -4.49 -
- 1.47 2.51 1.71 -0.81 -0.53 -7.03 -4.95 -2.59 -1.81 0.91 -0.64 - - - -
- - 1.35 0.22 -0.76 0.71 - - - - - - 1.76 0.67 0.42 1.9
-1.83 -1.54 2.2 1.86 1.24 -0.41 -1.11 -0.24 -2.94 -3.73 -0.96 -0.25 -1.62 -2.34 -2.08 -1.29
-1.89 -1.94 2.32 2.1 1.21 -0.04 -0.7 -0.8 -1.65 -2.54 -1.35 -1.61 -3.15 -2.64 -2.99 -3.49
-0.04 0.32 1.36 1.71 0.91 0.01 -2.96 -0.87 -5.3 -5.98 -1.89 -1.71 -0.34 0.16 -0.11 -0.12
-0.34 0.62 1.79 1.65 0.49 0.79 -0.52 -1.29 -1.76 -1.92 -1.33 -0.87 -1.55 -1.54 -1.98 -1.34

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.