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Heatmap: Cluster_161 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.58 - 1.11 2.66 -0.51 -0.58 - -4.07 - - -5.56 - -4.35 -4.44 - -
0.4 - - 0.23 - - - - - - - - 3.0 0.9 - 1.87
1.86 -6.41 1.06 2.11 0.24 1.9 -5.49 -8.5 -4.25 -4.49 -5.14 -4.94 - -2.84 -1.08 -2.17
1.22 0.37 0.74 0.25 1.01 1.36 -1.94 -2.95 -2.65 - - -2.66 -0.36 1.24 - 0.1
0.56 -1.35 0.27 -1.06 0.61 0.69 -0.19 -0.48 -0.82 -3.35 -3.31 -3.42 0.74 1.01 0.5 0.81
0.81 -0.2 -0.27 -1.08 -0.04 0.45 -1.44 -0.45 -0.67 -1.03 -1.21 -1.49 0.32 0.69 1.47 0.12
0.93 0.55 -0.64 -1.9 1.31 2.56 -0.58 -0.88 - - -1.56 -1.67 - 0.59 - -
-0.49 -2.48 -0.97 0.04 -3.34 0.34 -2.73 -0.65 - - - -1.89 1.18 1.64 1.29 1.73
0.49 -2.69 -0.6 -1.77 -0.39 0.24 -2.19 -1.22 -1.52 -1.46 -1.01 -1.79 1.92 1.38 -0.22 1.1
- 1.82 0.12 2.46 - 2.09 - - - - - 0.7 - - - -
2.53 - - 2.42 -0.11 0.73 - -0.31 - - - - - 0.58 - -
2.74 - - 3.11 - - -0.5 - - - - - - - - -
1.06 -2.72 0.42 - 0.25 0.11 - -2.03 - - - - 2.18 0.94 0.84 0.74
2.18 -2.53 0.95 1.81 0.72 0.44 -3.53 -5.54 - - -2.15 0.33 - -2.05 0.02 -
1.48 -3.13 -1.0 -1.25 1.55 1.47 -3.26 -2.65 - -0.37 - - 0.33 -0.77 1.3 0.2
0.87 -0.74 0.13 -0.15 -0.34 0.07 -1.47 -1.96 -2.97 -0.91 -1.0 -1.11 0.67 0.75 1.34 0.75
0.69 -4.55 0.35 1.03 0.92 1.21 -0.18 -0.33 -2.9 -2.21 -2.35 -2.98 0.36 -0.27 -0.79 0.83
-0.19 0.26 0.62 0.95 0.52 0.36 -1.31 -0.88 -3.18 -3.13 -0.2 -0.34 0.45 0.06 0.53 0.07
0.73 -1.36 0.13 0.47 -1.12 0.21 -1.92 -2.15 - - - - 2.04 0.7 1.31 0.21
- -3.57 -4.63 -3.89 - -3.45 - -5.16 - - - -5.66 2.6 1.98 1.13 1.78
0.5 -0.42 0.29 -0.83 0.3 0.92 -1.68 -2.52 -1.59 -1.38 -0.76 -0.25 0.17 0.02 1.56 0.27
1.92 -0.8 1.06 1.29 1.4 1.17 -1.59 -3.84 -3.42 -3.36 -4.44 -2.04 -2.5 -3.22 -0.15 -2.78
1.24 -0.43 0.14 1.18 0.99 1.38 -0.56 -2.59 -0.12 -1.22 0.59 -0.16 -2.61 -3.84 -4.64 -3.32
-0.64 -0.77 -0.57 -0.66 -0.97 -0.64 -2.86 -1.9 -5.47 -3.42 -2.21 -2.9 1.94 1.61 1.31 1.05
- 1.71 1.75 1.54 - 2.18 - - - - - - - 0.96 - -
0.7 -0.48 0.24 0.73 -0.06 0.95 -0.89 -1.39 -2.09 -2.09 -0.16 -0.88 0.53 0.11 0.04 0.63
0.21 - - 0.35 - -0.01 -2.68 -3.71 - - - - -0.1 2.12 1.87 1.77
-1.12 2.03 0.99 0.8 -2.2 1.44 -0.68 1.49 -1.76 - -1.67 - -0.42 - - -
0.08 -0.08 0.05 -0.06 0.36 0.68 -2.53 -1.28 -1.54 -4.66 -1.62 -1.73 1.05 1.17 0.38 0.93
0.2 0.69 1.28 1.01 1.02 1.13 -2.75 -2.22 -2.07 -3.1 -2.52 -1.59 -0.23 -0.03 -0.3 -0.5
-2.1 -1.34 -1.8 -1.15 -3.25 -0.78 -2.36 -1.67 - - -7.54 -3.84 2.41 2.34 -0.51 1.2
-0.61 -1.73 -1.66 -1.93 -1.07 -1.19 -2.05 -1.61 -1.18 -1.68 -2.63 -1.95 1.79 1.63 0.8 1.81
1.38 -4.57 0.95 1.38 1.31 1.51 1.05 -0.34 - - -2.66 -1.28 -6.12 -5.63 -5.14 -
0.88 -0.33 -0.22 0.43 0.13 0.96 -3.48 -0.03 - - -2.15 -1.25 - -0.4 1.67 1.31
1.04 -0.7 1.27 0.91 0.39 1.86 -2.5 -3.37 -0.51 -1.11 0.11 0.46 -4.43 -4.11 -4.45 -4.14
-3.37 -1.99 -1.52 -2.23 -1.43 -1.22 -5.56 -4.55 - - - - 1.78 1.73 1.9 1.9
2.27 - - 3.48 - - - - - - - - - - - -
1.55 -3.15 1.07 1.35 0.65 1.75 -1.45 -2.04 -0.84 -0.78 -0.59 -0.72 -4.15 -3.77 -2.76 -3.86
-0.1 0.31 0.54 0.84 0.85 0.57 -1.34 -2.26 -1.85 -1.73 -1.61 -1.61 0.68 0.63 0.15 0.27
0.94 0.25 -0.54 0.3 0.13 0.3 -1.47 -1.6 - - - - 1.19 1.19 0.77 0.76
-0.31 -0.48 -0.1 0.23 0.02 -0.08 -2.07 -2.65 -6.95 -5.89 -2.47 -2.59 1.66 1.68 0.72 0.71
- 0.9 - 2.18 - 1.82 - - - - - - - 2.6 - -
1.42 -1.49 0.29 0.68 1.03 0.77 -0.17 -0.52 -1.23 -0.93 -0.18 -0.09 -0.85 -0.96 -1.18 -0.91
0.8 -0.66 0.66 0.42 -0.03 0.95 -1.08 -1.93 -4.29 -3.23 -3.2 -2.72 1.3 1.16 -0.39 0.25
1.26 -5.43 1.46 1.2 0.88 1.88 -4.32 -2.46 0.54 -0.65 -1.37 -1.65 - - - -
-1.75 -4.27 -2.33 -2.09 -2.29 -1.4 -2.39 -2.49 - - -8.9 -6.06 1.73 1.94 1.78 1.88
2.06 - - 2.64 - - - - - - - - - - - 2.48
-0.45 0.4 -0.11 1.11 -0.58 0.75 -0.46 -1.63 -3.07 -3.02 -1.98 -0.76 1.53 0.92 - 0.67
0.76 -0.42 0.1 -0.88 0.75 0.96 -0.77 -1.34 -3.55 -1.68 -1.87 -1.24 0.8 0.66 0.78 0.26
0.83 0.11 0.9 -0.22 0.51 1.02 -2.01 -2.13 -4.23 -4.17 -4.1 -1.66 1.03 0.37 0.4 0.45
-0.11 -0.28 0.06 -0.35 0.6 1.36 -1.13 -0.65 -1.81 -2.35 -2.3 -3.41 1.32 1.16 -0.16 -0.26
-0.39 - -1.13 0.13 -1.72 0.09 -1.36 -0.27 - - -3.97 -2.09 1.95 1.71 0.87 0.89
0.8 -0.23 -0.44 0.76 0.24 0.91 -0.34 0.01 -6.8 -7.74 -2.47 -0.52 0.54 0.16 -0.31 0.9
1.37 - - 0.95 - - - - - - - - 3.52 - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.