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Heatmap: Cluster_339 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.7 0.22 1.93 1.36 0.47 -2.0 - -1.64 - - - - - - - -
-0.29 3.28 - 2.45 - - - - - - - - - - - -
0.78 0.39 0.14 0.57 0.48 0.33 -0.5 -1.11 -0.16 -0.22 -0.14 -0.05 -0.25 -0.92 -0.97 0.09
0.4 0.64 1.17 0.86 0.34 0.23 -2.82 0.36 0.18 -0.63 -1.39 0.07 -0.75 -1.14 -1.43 -0.83
0.92 -0.01 1.47 0.8 0.29 -1.36 0.21 -0.24 -1.66 -2.7 -2.09 -1.17 -0.18 0.18 -0.11 -0.15
0.1 -0.68 0.82 0.17 -0.04 -0.56 0.33 -0.07 -0.66 -0.08 0.4 0.33 0.09 -0.11 -1.29 0.0
0.21 -0.37 -0.33 0.28 -0.28 -0.24 -0.58 -0.87 -0.15 -0.39 -0.55 -0.48 0.61 0.39 0.63 0.78
0.35 -0.91 0.75 0.15 -0.43 -0.38 0.22 -0.63 -1.49 -2.26 -0.24 -0.28 0.52 0.56 0.84 0.18
0.34 -0.95 -0.17 0.37 -0.31 0.16 -0.53 -0.48 0.1 -0.27 -0.2 -1.03 0.9 -0.12 -1.2 1.15
0.62 0.59 0.36 0.7 0.17 -0.1 -2.5 -0.92 -1.97 -0.62 -1.79 -1.38 0.53 0.15 -0.35 1.24
0.41 -0.4 0.06 0.06 -0.49 -0.15 -0.15 -0.91 -1.2 -0.97 -0.7 -0.84 0.76 0.53 0.96 0.67
0.46 0.34 0.87 0.68 0.41 0.51 -0.5 -1.11 -0.08 -0.46 0.02 -0.24 -0.98 -1.23 -1.0 0.07
0.78 -2.97 0.55 0.5 -1.39 -0.45 -1.25 -0.32 -2.65 - -4.56 -2.66 0.77 0.17 -1.34 2.42
1.82 - - 2.12 - 1.76 - 2.24 - - - - - - - -
0.95 0.14 -0.33 -0.87 0.08 0.26 -0.28 -1.89 - - -4.25 -2.13 1.08 1.32 0.84 0.66
0.51 -3.66 0.43 -1.08 -1.21 -0.82 -2.04 -2.02 -7.26 -6.97 -6.79 -4.88 1.46 1.44 1.21 1.74
-0.29 -0.61 -0.01 -0.41 -0.76 -0.79 -1.42 -2.06 -3.17 -4.22 -2.48 -2.65 1.18 1.73 1.79 0.53
1.5 -0.63 0.1 0.73 0.76 0.26 -0.49 -1.56 -3.49 -2.43 0.06 -2.5 -0.04 1.43 -1.05 -2.19
-1.23 - -1.08 -1.02 -1.86 -1.07 -0.99 -1.16 - - -2.53 -3.44 2.03 1.47 1.15 1.82
0.63 0.89 -0.13 0.72 -0.06 0.34 -0.01 -0.56 0.12 0.35 -0.17 -0.24 -0.91 -1.29 -1.81 -0.3
1.69 0.33 0.98 1.32 0.1 0.75 - -5.23 -0.95 -0.3 - -0.64 - 0.07 0.33 -
1.14 1.04 0.84 1.15 0.28 1.33 -1.26 -1.65 -0.66 -0.71 -0.5 -0.45 -3.57 -3.1 -2.04 -3.08
2.09 - 1.98 1.31 0.11 1.27 - -2.09 - - 0.65 - - - - -
1.31 -2.06 -0.15 0.28 -0.49 1.18 -5.14 -0.53 -0.03 0.93 -3.39 -1.59 0.51 -0.48 -0.84 0.55
2.44 - 2.3 1.44 0.94 -1.32 -0.96 -8.47 -8.05 -7.99 -4.95 -4.89 - - - -5.95
1.81 -3.18 0.53 1.32 0.23 1.3 -1.57 -1.32 1.21 -0.13 -1.23 -1.66 - -3.4 - -
-0.57 -1.06 0.64 -0.71 -0.99 -2.74 -1.79 -0.34 - - -3.63 -3.15 1.67 1.53 1.3 1.15
1.93 -1.49 0.54 1.4 -0.4 0.33 -0.54 -2.7 -1.97 0.48 -1.71 -2.4 -1.63 -1.4 0.52 -0.75
2.08 1.12 0.07 0.96 0.9 -1.22 -2.53 -1.75 1.2 -0.22 -3.51 -2.62 -1.27 - - -
-0.62 -1.78 -0.5 -0.24 -1.52 -0.73 -0.82 -0.31 -2.44 -2.19 -2.84 -2.68 1.61 1.79 0.87 1.1
1.86 -2.26 1.91 2.17 1.07 0.84 - - - - - - - - - -
0.63 -1.31 0.32 0.32 -0.53 0.96 -2.98 -0.62 0.76 -0.93 -0.75 -2.19 0.61 -0.38 -0.61 1.11
-0.77 0.31 0.51 0.01 -0.27 -0.0 -0.52 -0.15 -6.86 -5.8 -4.77 -1.83 0.76 0.45 0.15 1.92
0.39 -7.52 0.86 0.18 -0.38 0.1 0.16 -0.96 -2.29 -1.89 -0.98 -1.34 0.77 0.85 0.12 1.21
1.27 -0.06 1.71 1.32 1.04 0.05 -0.78 -1.73 0.18 -0.23 -2.43 -2.1 -3.42 -2.51 -4.03 -2.8
-1.88 -0.65 -0.81 0.53 -0.52 -0.67 - -3.03 -0.88 -1.57 -3.12 - 2.42 1.0 0.07 1.17
1.34 -2.51 1.31 1.05 0.39 -0.66 -3.11 -2.56 -1.87 -3.01 -0.72 -2.29 1.03 0.32 -2.64 0.88
1.83 -2.83 2.13 1.77 1.37 -0.23 -7.44 -6.53 -4.37 -4.79 -1.41 -0.74 - - - -
0.65 0.49 0.27 0.7 0.33 0.15 -0.24 -0.48 -0.0 0.13 -0.45 -0.41 -0.48 -0.76 -0.72 -0.38
- 2.45 -0.94 2.21 - 0.62 -0.62 0.53 - - -0.23 - - -0.14 - -
2.45 - 0.1 1.85 1.79 -0.9 0.69 -7.64 - - -3.33 -4.44 - - -3.1 -
2.16 0.28 -0.7 -0.36 -0.57 -1.31 0.22 -3.95 -0.11 -1.63 -1.6 -0.7 -0.37 -0.47 0.6 0.5
0.85 1.15 0.65 0.64 -0.01 1.01 -1.95 0.09 -2.03 -3.97 -2.35 -4.04 0.48 -0.79 - 0.99
-0.54 -0.13 -1.18 -1.52 -1.44 -1.14 -2.33 -1.51 -2.97 -3.93 -2.27 -2.39 1.39 2.22 1.36 0.85
1.0 0.29 0.34 0.4 0.26 0.48 0.01 -0.58 -0.52 -1.32 -0.73 -0.29 -0.23 -0.38 -0.19 -0.11
0.93 -0.14 0.09 0.61 0.17 0.06 0.38 -0.2 -0.14 -0.53 -0.18 -0.47 0.09 -0.98 -1.02 -0.01
0.05 0.11 0.52 0.46 0.15 -0.3 -1.2 -1.41 -0.97 -1.1 -0.6 -1.24 0.72 0.76 0.46 0.66
1.05 1.28 0.93 1.42 -0.12 0.73 -1.92 -1.46 -1.64 - - - - -1.43 0.64 0.54
-0.06 0.84 1.04 1.69 0.77 0.68 -0.57 -1.31 0.06 -1.16 -0.2 -1.3 -1.88 -2.63 -3.93 -1.69
0.52 0.62 0.03 0.48 0.63 0.27 -0.49 -2.55 0.08 0.31 -1.28 -2.39 0.09 0.05 0.37 -0.56
1.23 - 1.55 2.48 - 1.53 - - 1.17 - - - - - - -
0.34 0.09 0.15 1.08 -0.24 0.71 - -2.26 - -1.51 - - 0.74 0.45 1.3 0.93
1.59 -1.99 0.51 1.08 0.31 0.94 -0.83 -0.96 -5.21 -4.2 -2.64 -2.55 0.47 -0.06 0.06 0.22
0.56 0.46 0.26 0.44 0.35 0.36 0.03 -0.51 -0.31 -0.15 0.11 0.07 -0.69 -0.97 -0.83 -0.33
0.49 0.63 0.61 0.75 -0.23 -0.13 0.95 -0.01 - - - -7.41 0.65 0.21 -0.55 0.78
0.74 -2.68 0.53 0.08 -0.78 0.42 -3.39 - -3.14 - -1.05 -2.15 -0.8 -1.31 2.87 -0.93
-0.79 -2.24 -0.86 -1.03 -0.82 -1.89 -4.7 -2.75 - - -3.61 -3.75 1.86 2.37 1.22 0.9

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.