Heatmap: Cluster_84 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.29 3.83 -2.8 -2.78 -5.0 -2.57 -5.79 -2.33 - - - - - -2.72 - -3.34
-1.7 3.24 -3.78 -3.89 -3.22 -1.9 -2.14 -1.23 -9.14 -10.08 -6.46 -3.62 0.25 0.72 0.01 0.19
-0.3 1.31 - - - - - - - - - - 1.57 1.81 2.04 1.06
-0.67 1.34 -2.99 -5.83 -3.57 -5.19 -1.76 -2.08 - - - -3.59 2.05 2.11 0.19 1.24
0.34 3.88 - - - - - - - - - - - - - -
0.72 2.62 -1.5 -1.04 -0.41 -1.66 -1.75 -1.26 -4.39 -5.91 -2.42 -2.18 0.42 0.72 -0.06 0.21
-0.4 2.24 - - - - - - - - - - - 3.4 - -
-0.22 2.73 - - - - - -0.09 0.13 - - - - 1.97 - 1.35
1.01 3.35 - -4.82 -3.02 -4.19 -6.41 -2.32 -1.78 -1.65 -2.75 -2.72 -0.74 -0.83 -2.26 0.14
0.9 3.25 - - - -1.08 - - - - - - - -1.31 1.35 0.25
-0.38 3.75 - - -1.1 -4.16 - -1.16 -3.55 - - - -1.58 -3.16 - -1.79
-0.61 3.24 -2.75 -2.15 -2.95 -1.41 -0.22 -2.15 - - -2.81 -0.7 -3.16 0.13 0.62 -1.29
1.53 3.2 - 0.35 - - - - -0.39 - - - - - 0.89 -
0.43 3.69 -4.94 -3.16 -4.69 -2.91 -6.07 -9.06 -1.28 -2.0 -2.51 -2.13 -4.49 -4.59 -2.35 -4.61
0.43 3.51 - - -7.53 -1.59 -8.59 0.37 -0.76 -2.96 - -7.69 -1.49 -2.46 -3.19 -2.03
-0.61 3.88 - -1.83 - -3.42 - -7.64 -4.38 -4.32 - - -3.07 - - -
-0.31 1.61 -2.09 -2.23 -2.84 -1.9 -1.92 -1.28 -1.52 -3.35 -2.09 -2.0 -2.06 -0.89 2.98 0.04
0.39 3.88 - - - - - - - - - - - - - -
0.75 3.73 -4.02 -4.07 -3.89 -3.48 -6.78 -4.78 -4.36 -4.3 -5.85 -6.54 -2.73 -3.38 -3.22 -2.15
1.12 3.76 - - - - - - -2.02 - - - - - - -
0.77 2.49 - - - - - - -0.59 - - - 0.76 2.47 - -0.37
-1.39 2.87 -3.52 -4.52 -2.97 -2.73 -4.03 -2.25 -7.37 -7.9 -5.86 -3.92 0.67 0.97 1.12 0.85
0.76 3.72 -1.62 -2.28 -1.51 - - - - - -1.91 - - - - -
0.26 3.89 - - - - - - - - - - - - - -
1.36 2.89 -4.17 -4.25 -3.24 -3.03 -4.26 -4.52 -3.59 - -2.69 -3.6 -1.46 0.96 1.17 -0.48
-0.06 3.88 - - - - - -1.89 - - - - - - - -
1.01 3.33 -2.62 -1.86 -4.15 -4.11 -1.17 -3.1 -6.41 - -3.61 -3.96 -0.82 -0.53 -1.09 -0.1
0.08 3.86 - - -1.68 -2.84 - - - - - - - - - -
- 3.82 -2.83 -1.49 -1.12 -0.54 -3.51 -2.92 - - - - - - - -
0.89 2.81 -2.59 -2.55 -1.01 -0.96 -1.25 -1.7 -2.39 -3.72 -2.43 -1.63 -0.31 0.2 0.24 0.16
1.72 3.36 -0.64 0.15 -2.76 -1.45 -5.42 -8.4 -7.19 -7.13 -3.92 -4.2 - -6.93 - -
-0.94 1.49 -5.87 - -5.16 -3.74 -4.74 -9.52 - -3.92 - -6.32 1.67 2.01 1.26 1.5
-0.0 3.16 -5.75 -5.42 -6.63 -2.62 -2.97 -1.9 -5.17 -5.11 -5.08 -5.19 1.04 -2.77 - 1.65
0.94 3.67 -3.93 -2.86 -3.8 -3.55 -6.19 -8.16 -0.91 -1.99 -4.27 - -4.6 -4.7 -3.63 -
0.93 2.73 - - - - -0.79 - - - - - 2.79 - - -
-0.85 3.81 -2.76 -1.62 -1.3 -1.62 - - - - -2.51 - - - - -
1.43 3.73 - - - - - - - - - - - - - -
0.08 2.98 -1.91 -5.03 -2.66 -3.08 -1.72 -0.89 -2.77 -3.71 -3.68 -2.78 -0.88 0.44 0.97 0.41
1.32 3.25 -0.62 -0.57 -1.0 -1.23 -6.05 - -3.19 -4.72 -0.68 -0.03 - - - -
0.59 3.71 - - - - - - - - 0.5 - - - - -
0.42 2.98 - - -4.45 - - - -1.41 -3.94 - - -0.08 0.82 0.89 0.79
1.15 3.79 - - - - - - - - - - - - - -
1.48 3.65 - - -4.6 - -5.4 - - - - -3.16 -2.82 -1.59 - -
-1.03 1.99 - - - - - - - - - - - 1.48 - 3.13
0.45 3.87 - - - - - - - - - - - - - -
1.4 2.8 -1.72 -0.81 -1.02 -0.29 -1.36 -2.5 -3.76 -3.17 -3.84 -3.62 0.19 -0.45 -0.79 -0.23
1.07 3.65 - - - - - -0.11 - - - - - -1.32 - -
-0.69 3.22 - -3.56 - -2.35 -2.98 -1.51 - - - - 1.82 0.62 - -2.11
1.66 3.68 -9.01 -11.0 - -10.37 - -9.65 -10.77 - -9.67 -10.78 -7.09 -8.51 - -8.54
2.12 3.54 - - - - - - - - - - - - - -
0.89 3.77 -5.52 -5.2 - -4.56 - -3.41 - - - -4.97 -2.61 - -2.63 -
1.22 3.57 - - - - -0.69 - - - - - - - 0.28 -
0.65 3.82 - - - - - - - - - - - -1.63 - -
1.7 3.67 - - - - - - - - - - - - - -
1.4 3.38 -2.62 -0.67 -1.83 -2.08 -0.85 -3.07 -4.87 -4.81 -2.07 -3.56 -2.19 -2.8 -3.54 -3.05
-0.86 3.2 -2.63 -3.76 -2.66 -2.67 -1.25 -1.28 -6.92 - -2.24 -3.35 0.37 -0.02 -0.69 0.76
-0.4 3.74 - - - - - - - - - - -0.59 - - 0.29
-1.41 0.7 - - - - - -2.24 - - - -1.58 1.33 2.82 - 1.95
1.38 3.49 -2.52 -1.18 - -0.97 - -2.61 - - -0.84 - - -1.71 - -
-0.51 2.01 -3.85 -4.39 -2.23 -1.56 -1.89 -2.61 -6.74 - -4.06 -3.05 1.7 1.89 0.04 1.0
0.28 3.89 - - - - - - - - - - - - - -
0.23 3.02 -3.19 -3.44 - - - - - -4.13 -2.1 - 0.59 0.62 1.28 -0.4
-0.99 3.55 -2.18 -3.6 -1.83 -4.97 -0.83 -0.77 -3.31 -1.67 -3.08 -1.68 -1.28 -2.0 -1.56 -2.41
-0.7 2.3 - - - -5.08 - - - - - - 0.24 1.03 2.48 0.67
-0.48 3.84 - - - - - - - -2.76 -2.73 - - - -0.5 -
1.2 3.43 -2.06 -1.72 -0.6 -1.83 -1.2 -3.45 -3.47 -3.57 -1.89 -2.56 -2.67 -3.76 - -3.6
1.23 3.75 - - -7.44 - -7.24 -4.05 - - - - - -8.34 -6.27 -3.28
-0.15 3.91 -6.49 -8.48 -8.17 -9.07 -9.12 -8.89 -4.28 -8.4 -9.36 -7.59 -8.12 -10.8 -8.73 -7.51
1.59 3.22 -3.03 -3.79 -1.81 -1.88 - - -4.76 - - -6.36 -0.12 -0.95 -1.24 0.02
1.63 3.46 - - - - -1.83 -2.81 -1.59 -1.53 - - - - - -0.37
0.18 3.87 -5.75 - - -5.78 - -2.46 -5.73 -5.68 - - - - - -
-1.07 3.6 - - - -0.73 - - - - - - - -0.91 1.16 -
1.46 3.46 -2.65 -1.0 -1.93 -0.37 -4.32 - - - -2.99 -3.1 - - - -1.86
1.6 3.35 -1.41 -0.37 -0.34 -2.13 - - - - - - -3.2 -4.3 -2.22 -2.32
1.15 3.78 - - - - - - - - - - - - - -
1.02 2.66 -2.4 -3.65 -1.8 -3.78 -1.04 -2.09 -6.48 -5.1 -4.38 -3.1 0.44 0.57 0.86 0.55
-0.16 1.7 -1.64 -1.79 -1.11 -1.62 -1.71 -1.91 -3.72 -5.15 -4.63 -3.02 1.26 1.5 0.93 1.32
-0.08 3.54 - -5.74 -3.63 -3.1 -4.16 -4.0 -5.48 -4.42 - -5.49 -0.17 -1.18 -0.02 -0.59
1.62 3.66 - - - - - -1.81 - - - - - - - -
1.0 3.74 -5.0 - - -5.04 - - - - - - -2.08 -3.18 -2.11 -
-0.08 3.51 -5.44 - - -4.47 -5.11 -2.75 -3.86 - -4.77 -2.55 -1.21 -0.04 -0.55 0.05
-1.98 3.86 - - - -0.14 -1.79 - - - - - - - - -
-0.29 2.42 -2.09 -2.83 -1.96 -1.78 -1.0 -1.52 -2.11 -2.69 -1.74 -2.12 0.83 0.68 0.32 1.33
1.16 3.68 -4.54 -3.52 -1.2 -2.63 - -6.86 - - - -5.99 - - -2.33 -
1.69 3.63 -1.22 - - - - - - - - - - - - -
0.58 3.71 - - -1.79 - - - -0.93 -1.87 - - - -1.69 - -
1.97 3.33 -4.05 -5.72 -3.59 -3.08 -2.81 -4.24 -1.89 -1.83 -2.58 -3.49 -3.13 -2.06 -2.16 -2.67
-0.37 2.85 - - -2.9 -0.74 -0.53 -1.36 - - - -0.88 0.47 1.11 - 1.08
1.48 3.72 - - - - - - - - - - - - - -
0.05 2.3 -4.13 -4.49 -3.11 -2.81 -3.77 -2.64 -4.95 -4.72 -4.54 -5.15 1.78 1.7 -1.05 1.1
-2.54 -0.23 - -4.63 -6.43 - - -7.64 - - - - 1.92 2.53 1.69 1.09
1.83 3.64 - - - - - - - - - - - - - -
0.74 3.83 - - - - - - - - - - - -3.35 - -
-0.62 2.47 -2.67 -2.33 - - -1.35 -1.79 - - - - 1.74 -0.29 0.2 1.79
0.4 3.31 - - -5.13 - - - - - - - 1.3 0.42 -0.79 -1.47
0.71 3.55 - - - -2.94 -0.79 -4.61 - - - - - - 0.96 -
0.4 3.53 -1.88 -3.54 -2.16 -1.91 -0.02 -0.81 - - -2.2 -1.72 - -2.06 - -
-0.19 2.97 -2.04 -1.46 -1.82 -1.55 -1.1 -0.84 -0.61 -0.89 -2.57 -2.02 -0.54 -0.7 -0.57 0.5
0.37 3.3 - - - - - - - - - - - - 1.72 0.62
1.38 3.1 -2.92 -1.99 -2.8 -3.94 -0.93 -3.6 -3.32 - - - 1.16 -0.3 - -1.14
-1.4 3.79 - - - -0.66 - -2.62 - -2.81 - - -1.52 -1.02 - -
-0.06 3.08 -1.77 -1.54 -1.26 -2.42 -1.15 -0.76 -5.06 - -1.32 -3.26 0.24 -0.86 -0.28 0.29
-0.06 3.8 - - - - - - - - -7.81 -7.91 -1.36 -1.67 -2.28 -2.3
1.71 3.66 - - - - - -4.7 - - - - - -4.03 - -
- 3.9 - - - 0.09 - - - - - - - - - -
1.26 3.77 - - - - - - - - - - - - - -
0.76 3.6 - -1.5 - - - - - - 0.85 - - - - -
-1.57 2.84 -3.83 -3.22 -3.82 -1.59 -3.14 -2.26 -4.73 -2.53 -3.5 -3.15 0.97 1.18 0.56 0.59
-0.02 3.08 -0.89 -1.48 -0.76 -2.14 -1.0 -1.42 -2.36 -1.82 -2.59 -2.38 -0.37 0.18 -0.4 -1.17
1.2 3.06 -4.28 -2.92 -3.17 -2.96 -1.05 -1.93 -0.12 -0.89 -1.55 -2.66 -1.35 -0.48 - 0.18
-0.16 3.86 - - - - - - - - - - - - -0.84 -
1.03 3.8 - - - - - - - - - - - - - -
-0.45 3.38 - - - - - -2.73 - - - - - - 2.23 -
-0.68 3.81 - - - - - - - - - - - - 0.41 -
-0.91 3.01 - - - - - - - - - - - - 2.89 -
-0.45 2.87 - - -3.53 - -3.84 -1.74 - - - -4.07 1.38 0.59 0.27 1.08
0.32 3.78 - - -4.93 -2.51 - -2.57 -4.5 -4.44 - - - -4.24 -1.17 -
- 3.45 - - - -0.36 - - - - - - 0.59 - - 1.47
-1.36 -0.08 -3.1 -4.56 -4.79 -3.34 -3.12 -4.35 -3.71 -5.24 - -2.99 2.37 2.02 1.06 1.43
0.37 3.85 - - - - -3.41 - - - - -2.18 - - - -
0.1 3.43 -5.22 - -4.68 - - -5.22 - - - -6.24 0.19 0.26 -0.75 0.15
-0.99 3.76 -3.02 -1.68 -0.88 -3.05 -3.69 -2.14 - - -3.35 - - - -1.13 -
-0.03 3.29 -8.13 -5.47 -5.19 -6.16 -6.8 -3.62 -7.56 - - -7.57 0.15 -0.3 0.16 1.03
1.0 2.39 -0.59 -0.68 -0.48 -0.72 -0.46 -0.77 -0.91 -1.1 -0.68 0.38 -0.6 -1.54 -1.51 -0.83
0.92 2.41 -4.68 -4.33 -3.56 -3.11 -2.65 -2.13 -3.07 -1.43 -1.97 -2.27 1.13 1.04 0.52 0.56
1.51 3.64 - -1.39 - - - -3.83 - - - - - -1.92 - -
0.06 3.41 - - -1.34 - - - - - - - - - 1.42 0.32
-0.08 3.66 -4.9 -2.57 -3.77 -4.94 -3.99 -6.54 -1.64 -3.28 -2.66 -4.35 -1.66 -2.27 - -0.2
-0.13 3.77 -3.25 - -2.12 - -3.92 -0.95 -2.68 -2.62 - - - -2.43 - -
-0.7 2.35 - - - - - -2.6 - - -3.96 - 1.52 1.18 1.83 0.47
0.98 3.81 - - - - - - - - - - - - - -
0.97 3.81 - - - - - - - - - - - - - -
0.8 3.6 -6.44 -6.1 - - -8.11 -2.0 - - -7.77 - -0.97 -0.46 - -0.76
-1.37 2.66 - - - - - - - - - - 0.43 - 2.99 -
-4.07 3.87 -0.64 - - -0.67 - - - - - - - - - -
-4.13 -0.76 -6.52 -7.51 -5.14 -6.35 -6.93 -6.7 - - -9.17 -8.28 1.71 2.4 2.01 1.44
1.81 3.55 -6.71 -5.92 -9.04 - -5.75 -5.31 -6.77 -5.61 -3.99 -5.68 -2.28 -3.03 -3.7 -2.1
1.34 3.42 -4.48 -2.41 -4.94 -4.52 -3.04 -4.91 -1.69 -3.43 -0.81 -2.7 -2.57 -2.44 -0.37 -4.28
1.84 3.64 - - - - - - - - - - - - - -
-0.75 3.77 - - - -1.5 - -5.43 -1.63 -0.84 - - - - -0.89 -
1.02 3.64 -6.12 -5.78 -7.57 -7.15 -8.37 -2.24 -4.32 -4.9 - -6.14 -1.7 -1.54 -2.35 -1.87
-0.41 3.92 - - -2.66 - - - - - - - - - - -
1.52 3.71 - - - - - - - - -4.27 - - - - -
-1.76 0.75 - - - - - - - - - - 2.27 1.17 2.24 1.15
1.91 3.61 - - - - - - - - - - - - - -
0.13 3.9 - - - - - - - - - - - - - -
-0.99 1.77 - - - - - - - - - - 3.44 0.34 - -
1.31 2.84 - - - -5.07 -3.39 -1.67 -0.58 -0.48 -1.65 -3.87 -0.43 0.36 0.01 0.14
1.71 3.67 - - - - - -5.35 - - - - - - - -
0.63 3.85 - - - - - - - - - - - - - -
0.99 3.23 -0.89 -0.16 -1.09 -0.89 -2.6 -3.41 -3.08 -3.13 -3.08 -2.16 -2.14 -1.09 -1.04 -2.53
2.02 3.58 - - - - - - - - - - - - - -
0.39 1.83 -2.83 -4.5 -2.38 -3.0 -2.57 -1.85 -3.04 -3.45 -3.16 -1.54 1.24 0.99 1.45 1.29
0.68 2.31 - - -2.49 - - - - -2.98 - -3.05 1.29 1.0 0.26 1.75
0.09 3.86 -5.24 -4.9 - -5.27 - - -4.66 - - - -2.32 - - -3.45
0.56 3.79 - -5.05 - - - -7.7 - - - - -1.66 -3.1 -2.17 -
0.49 2.74 -2.4 -3.16 -3.86 -3.83 -1.3 -0.95 -5.71 -5.24 -4.03 -3.06 0.81 0.44 0.12 1.1
0.79 3.76 - - - - - - - - - - - - -0.53 -
0.43 3.08 -3.27 -2.35 - -1.72 -1.35 -1.27 -3.71 -3.64 - - 0.82 -0.28 0.21 -0.15
1.51 3.22 - - -5.58 - - -7.36 - - - - 0.01 -0.03 -0.82 0.33
0.06 3.28 -2.64 -1.92 -1.32 -1.44 -1.47 -1.77 -4.88 -7.63 -2.98 -1.18 -0.35 -1.27 -0.81 0.03
-0.59 3.42 - - - -1.38 - - - - - - - -0.53 1.54 -0.56
1.64 3.68 - - -4.58 - - - - - - - - - - -
0.94 2.86 - - - - - -3.51 - - - - - 0.43 0.5 1.98
-0.27 3.84 - - -4.29 -2.87 - - -2.84 -2.78 - - - - -1.53 -
1.66 3.29 - - - - - - -1.09 - - -1.1 - 0.11 - 0.09
-1.97 3.72 - - -2.65 -0.24 -3.46 -1.34 - - - - - - 0.1 -
-0.52 3.94 - - - - - - - - - - - - - -
0.06 1.42 -1.99 -2.27 -1.93 -1.97 -1.31 -2.06 -2.7 -2.51 -2.29 -1.87 1.31 1.58 1.37 0.85
1.41 3.69 -4.43 - -3.3 -4.46 -5.42 -3.07 - - -6.07 -4.59 - - - -4.96
0.79 3.14 -2.98 -2.45 -2.21 -2.82 -4.47 -2.35 -2.86 -4.13 -3.51 -5.2 0.57 -0.03 -0.91 0.31
1.77 3.41 - - - - -4.0 -2.99 - - - - -1.42 - -0.44 -0.54
0.04 3.9 -5.39 - - -8.01 - - - - - - - - - -
0.54 3.35 - - - - - - - - - - - - 2.11 -
1.69 3.67 - - - - - - - - - - - - - -
1.27 3.33 -0.66 -2.15 0.32 -2.98 -2.03 -0.66 -4.36 -2.98 -2.95 -3.37 - - - -
-2.51 1.26 - - - - - - - - - - - - 3.75 -
-2.8 0.36 - - - - - -4.68 - - - - - 1.47 3.55 -
-0.1 3.91 -5.55 -5.06 -9.46 -6.23 - - - -6.04 - -8.98 - - - -
0.72 3.74 -4.19 -3.28 -3.25 -4.65 -3.06 -5.38 -4.04 - -3.21 -4.64 -4.28 -3.05 -3.31 -3.4
0.92 3.82 - - - - - - - - - - - - - -
-1.39 2.09 - - -1.5 -3.27 - - - - - - 2.28 1.68 - 1.51
-1.59 3.77 - - - -3.33 - -4.4 -1.12 -1.06 - -2.71 - - -0.42 -
1.27 3.76 - - - - - - - - - - - - - -
1.01 3.11 -1.62 -2.15 -0.64 -2.24 -1.75 -2.4 -4.37 - -5.27 -2.79 -0.79 -0.72 0.3 -0.24
1.82 3.62 -5.54 -5.36 -7.07 -4.72 -10.19 -12.5 -7.8 -8.88 -5.81 -6.75 - - -6.96 -5.3
0.37 3.88 - - - - - - - - - - - - - -
1.85 3.47 - -4.85 - - - -5.84 -3.02 0.04 - - - -4.37 - -3.4

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.