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Heatmap: Cluster_318 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.23 -1.17 -2.84 -3.33 - - -0.76 -1.0 - - - - 1.86 2.25 1.63 1.21
-3.51 -2.56 - - - - -3.84 -2.78 - - - - 2.43 2.25 -1.29 2.31
0.88 1.33 -3.36 -2.03 -1.66 -2.09 0.49 1.27 - - -1.69 - -1.37 0.03 1.66 1.04
0.83 1.35 -0.24 -0.29 -2.05 -2.19 0.88 -1.49 -2.36 -1.51 -1.25 -1.11 0.9 0.42 -0.56 1.02
-0.31 -0.85 -3.33 -3.13 -3.34 -1.91 -1.42 -0.72 -2.63 -5.16 -2.42 -2.77 1.58 1.99 1.42 1.54
0.02 0.63 -2.14 -2.86 -1.6 -1.73 -0.54 0.18 -6.21 -6.56 - -8.22 1.51 1.64 0.94 1.44
-0.37 -0.33 -1.3 -1.7 -0.66 -1.28 -0.74 -0.25 -1.64 -2.11 -1.8 -1.18 1.5 1.35 0.7 1.56
-1.09 -2.46 -4.74 -2.82 -3.8 -3.08 -1.68 -1.44 -3.0 -5.11 -4.08 -2.48 2.15 1.46 0.85 2.29
-1.23 -0.14 -1.53 -2.53 -2.27 -1.52 -0.58 0.02 -1.33 -1.43 -2.6 -2.66 1.53 1.73 1.37 1.02
0.24 -0.28 -1.85 -0.95 -1.33 -1.18 -1.31 0.83 -2.28 -4.27 -6.04 -2.29 1.41 0.63 0.64 1.98
-1.4 1.12 -1.07 0.26 -2.27 -0.26 0.18 2.15 -2.81 - -0.14 -0.83 0.84 -1.58 0.49 -
0.89 0.46 - -4.91 - - 0.4 0.72 - - - - 1.72 0.58 0.46 1.85
-1.73 -0.55 - - - - -1.3 -0.78 - - - - 1.31 2.8 - 2.19
-0.03 - -1.35 -1.24 -4.42 -2.93 -1.7 -0.1 -4.89 -4.84 -4.79 -2.9 2.23 1.4 1.51 1.24
0.27 -0.42 -1.28 -0.64 -1.08 -0.74 0.12 0.03 -0.87 -1.72 -0.87 0.09 0.73 0.86 0.91 1.0
1.75 2.29 - 0.54 - - 2.21 - 0.75 - - - - - - -
0.78 0.16 -1.8 -1.72 -0.78 -3.6 -0.03 1.29 - - - - 1.39 1.03 0.54 1.24
0.29 -0.79 -0.82 -0.61 -6.27 - 0.51 0.66 - - - - 1.64 1.17 0.8 1.51
-0.42 -0.34 -2.43 -1.68 -1.33 -1.52 0.32 0.08 -1.48 -1.43 -0.34 -2.35 1.36 1.19 0.34 1.62
-0.73 -5.3 -2.89 -4.36 -4.57 -4.72 -0.44 -0.7 - - - -3.53 1.89 1.95 0.77 2.14
-4.21 -5.27 -8.43 -6.22 -7.31 -6.14 -8.37 -3.72 - - - - 2.78 1.62 -1.25 2.45
-0.27 0.71 -2.35 -2.68 -1.8 -1.53 -0.61 -0.08 -3.61 -2.98 -1.96 -1.1 1.27 1.3 1.07 1.61
-2.46 - -4.53 -4.45 -6.99 -7.14 -3.62 -3.06 - - -4.42 -5.53 2.0 2.58 1.57 1.32
0.7 0.47 -0.27 0.27 -0.8 -0.93 0.55 0.5 -1.13 -0.86 0.17 -0.4 0.25 -0.14 -0.32 0.26
0.38 -1.09 -0.39 -0.83 -1.33 -1.58 0.16 -0.45 -1.49 -1.75 -0.75 -0.94 1.09 1.12 1.18 1.0
0.9 0.29 -0.55 -0.67 -0.37 -0.08 0.38 0.82 -0.79 -1.06 -0.32 0.17 -0.14 -0.18 -0.06 0.1
0.48 -1.34 -0.75 -0.56 -0.93 -1.01 0.15 0.08 -0.83 -0.82 -0.38 -1.26 1.14 0.91 0.6 0.88
0.29 0.11 -2.62 -2.54 -1.42 -1.29 0.44 0.66 -1.4 -1.66 -0.7 -1.09 1.22 0.91 0.01 1.4
0.95 0.7 -1.02 -0.05 -0.32 -0.27 -0.15 1.64 -2.42 -2.56 -0.76 -0.83 -0.09 -0.39 -0.64 0.57
-2.84 -0.69 -5.63 - -5.5 -5.67 -1.1 -0.17 - - - - 1.74 1.76 -0.05 2.62
0.75 0.91 -0.53 -0.98 -0.3 -1.43 0.34 -2.29 -3.82 -1.97 -1.26 -0.83 0.44 0.74 1.42 0.64
-0.29 -0.87 -1.54 - -2.64 -4.38 0.26 0.08 -3.76 -2.12 -1.34 -0.6 1.88 1.37 1.12 1.02
-0.04 -1.01 - - -2.91 -2.43 -0.35 -0.54 - - - - 1.85 1.14 1.5 2.04
0.07 1.27 - - - - -0.29 0.89 - - - - 1.71 1.84 - 1.59
0.77 1.14 -0.71 -0.75 -0.03 0.46 0.67 -1.04 -1.25 -0.6 -0.04 -1.26 0.5 -0.01 -1.52 0.28
-0.27 -0.17 -0.89 - - -2.92 -0.98 -1.53 -3.89 -3.83 -2.21 -2.9 1.75 1.79 1.41 1.48
-0.16 0.5 -1.65 -2.01 -1.05 -1.27 -0.23 0.1 -2.14 -3.47 -2.26 -1.49 1.13 1.61 0.84 1.26
0.1 0.4 -1.0 -1.09 -1.41 -0.78 0.82 0.63 -0.57 -0.8 -0.06 -1.07 0.6 0.53 -0.19 0.89
-0.9 1.21 -1.23 -2.41 -0.01 -1.55 0.51 1.55 -1.2 -0.39 0.2 0.01 0.34 0.18 -2.45 -0.14
-3.4 1.84 -2.57 - 0.36 -0.44 1.71 2.06 -1.4 -1.93 - -0.19 -1.66 -1.76 - -0.79
0.35 0.22 -0.57 -1.28 -1.37 -2.1 0.08 -0.1 -2.1 -2.04 -2.36 -2.83 1.64 0.99 0.45 1.37
-0.48 -0.77 -1.4 -1.18 -3.46 -6.55 -0.44 0.83 - - - - 2.06 1.14 0.73 1.69
1.58 1.54 0.52 -0.33 0.19 0.08 1.7 -2.94 -3.04 -1.18 -1.14 -0.35 -3.7 - -2.72 -1.82
-0.59 -0.55 -3.45 - -4.31 -3.75 -0.66 -0.26 - - -2.37 -3.15 2.03 1.57 0.44 2.08
-0.28 -1.06 -1.23 -2.19 -2.24 -2.52 -0.34 -0.84 -1.66 -2.53 -1.69 -0.82 1.44 1.64 1.78 0.75
-5.19 -1.25 -3.39 -2.06 -3.26 - -1.61 -0.24 - - -3.72 - 2.8 1.23 0.49 1.64
0.73 0.06 -0.8 -0.25 -0.37 -1.05 0.52 0.23 -0.99 -1.7 -1.44 -2.56 1.0 0.78 0.02 0.95
-1.59 -0.26 -3.91 -4.74 -3.75 -3.12 -1.49 -0.37 -7.3 -6.02 -4.47 -2.9 1.84 2.01 1.17 1.74
0.33 0.95 -3.06 -2.5 -2.29 -2.14 -0.02 -0.02 - -5.02 -2.98 -2.77 1.85 1.2 -0.17 1.59
-0.36 -0.48 -1.73 -2.94 -1.6 -1.35 -0.65 -0.24 -1.75 -1.62 -0.85 -1.11 1.76 1.2 0.87 1.43
0.57 -0.03 -0.71 -0.58 -0.76 -0.43 0.24 -0.36 -1.23 -2.33 -1.87 -1.45 1.21 0.67 0.83 1.03
- 2.08 - - - - 1.4 2.05 -0.13 -0.07 - - - - - 1.64
0.1 0.71 -1.69 -2.23 -1.51 -1.03 0.34 0.57 -4.55 -4.2 -1.17 -1.35 1.41 1.23 0.87 0.49
0.87 0.58 -0.53 -0.92 -2.2 -1.83 -0.1 0.82 -2.45 -2.05 0.0 -3.05 0.9 0.83 0.29 0.87
-0.27 0.37 -2.68 - -2.13 -2.31 -0.24 0.5 -3.71 - -2.03 -3.72 1.82 1.08 0.95 1.61
-0.08 -6.7 -1.76 -2.49 -4.02 -4.6 -0.44 -0.05 -3.99 -4.51 - -3.26 1.26 2.23 0.83 1.89
0.61 -0.41 -0.47 -0.55 -0.88 -0.96 0.57 0.33 -1.2 -1.33 -0.6 -1.13 0.9 0.3 0.33 1.15

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.