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Heatmap: Cluster_166 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.52 2.59 1.97 - - -0.03 - - - - - - 1.86 - - -
- - 2.86 - - - - 3.13 - - - - - - - -
-1.41 2.08 2.2 - -1.33 0.82 -0.34 - - - - 0.03 - - - 1.5
- 2.99 2.52 - - - - 1.2 - - - - - - - -
-0.69 1.87 1.71 - - 0.1 1.46 -0.95 - - - - 2.04 - - -
- 2.59 3.32 - - - - - - - - - - - - -
- 1.47 -1.1 - - - - -0.18 - - - - 0.81 - 2.79 1.69
-1.96 2.77 1.57 -1.45 -0.54 1.78 -4.71 -3.87 - - - -4.35 -1.94 -1.72 -0.38 -
- 3.04 1.34 - - - - -0.33 - - - - - 2.15 - -
- 2.95 0.27 0.34 -1.19 -1.35 0.38 1.75 - - - -1.75 - - - -
- 0.02 0.66 - - - - 0.79 - - - - - - 3.54 -
- 3.02 2.27 -1.96 0.95 -4.4 -3.62 -4.19 -1.63 -2.83 -7.6 -2.7 - - -4.38 -
- - 0.6 - - - - 1.25 - - - - - 0.41 2.48 2.38
-0.84 2.09 1.59 0.35 -0.87 2.15 - - - - - - 0.92 - - -
- 1.67 0.62 - - - - - - - - - - - 3.5 -
- 2.87 1.82 - - - - - - - - 2.37 - - - -
- 2.95 3.05 - - - - - - - - - - - - -
- 2.14 2.68 - - - - 1.03 - - - 1.65 - - - -
- 1.52 2.21 1.57 -1.01 -1.12 -1.8 0.24 - - - -0.49 - 1.27 - -
- - 2.5 - - - 0.24 3.19 - - - - - - - -
- 2.99 2.22 - - 0.37 - - - - 1.07 - - - - -
- 1.91 0.9 - - - - -1.17 - - - 0.47 - 0.72 2.79 -
1.02 1.75 3.38 - -2.33 - - - - - - - - - - -
-5.39 3.0 1.77 -0.02 0.05 -1.64 - 0.91 -4.03 - -4.94 -2.23 - -4.78 - -
- 3.08 2.18 - - 1.58 - - - - - - - - - -
- 2.06 2.2 1.95 - - -0.05 - - 1.25 - - - - - -
- 3.11 1.61 - 0.73 - - - - - - - - - - 1.39
-1.31 2.72 1.32 -0.75 0.43 -1.39 0.32 -2.34 -1.22 -1.45 -1.41 -0.28 -2.45 -1.49 -3.18 -3.28
-1.85 2.25 0.99 -3.05 -0.62 -4.56 -0.98 0.84 - - -6.18 -5.28 0.02 0.37 0.95 0.67
-3.17 3.09 1.17 -0.03 0.85 -1.0 -2.95 -3.66 -4.13 -3.48 -0.86 -1.33 - -3.93 -1.27 -3.95
0.11 1.44 0.67 -0.29 -0.66 -1.44 -2.88 - -2.22 -2.16 -0.81 0.35 0.35 0.48 1.68 -1.0
0.79 1.04 2.36 1.38 -1.48 - -5.45 -4.18 -2.22 - -4.12 -1.91 -0.04 -0.42 -1.1 0.4
-2.03 0.21 - - - -1.22 - -1.86 - - - - 1.72 1.62 - 2.91
- 2.64 3.29 - - - - - - - - - - - - -
- -2.66 0.76 -0.46 - - -0.93 -0.86 -1.19 - - - - 1.77 - 3.08
1.6 2.81 2.58 - - - - - - - - - - - - -
- 0.91 0.96 -0.13 0.68 0.51 -2.71 -1.51 - - -0.38 -0.49 - - 2.44 -0.25
- 2.04 - - -0.9 -1.04 0.63 2.49 - - - - 1.89 - - -
- -1.54 -2.04 - - - -2.62 -1.64 - - - - - 1.78 3.41 -0.25
- 2.38 2.93 1.67 - - - - - - - - - - - -
- - 0.89 - - - -1.36 1.47 - - - 0.86 - - 3.2 -
- 3.49 1.51 - - 0.25 -0.39 - - - - - - - - -
- 3.17 2.8 - - - - - - - - - - - - -
- 1.04 -0.77 - - -1.81 -1.44 -1.09 - - - -1.21 1.73 1.05 2.12 1.03
-0.03 2.38 3.13 0.14 - - - - - - - - - - - -
1.34 3.17 2.15 - - - - - - - - - - - - -
-1.98 0.8 0.85 -0.28 -2.86 -0.38 0.52 -0.99 - - - - 0.93 1.01 1.91 -0.19
- 2.16 2.31 0.06 - 1.7 0.06 - - - - 0.3 - - - -
- 3.17 2.8 - - - - - - - - - - - - -
- -1.15 - - - - - -2.58 - - - - 2.54 1.79 1.4 1.8
-2.73 0.79 -0.92 - - -2.33 -0.94 -1.38 - - - - 2.21 1.32 1.93 0.64
-0.12 2.64 0.56 -0.43 -0.64 2.16 - -5.42 -2.18 - - - - 0.37 - -
- 1.91 1.24 -0.86 -0.8 1.36 0.27 -1.31 0.23 -0.3 -0.52 -0.63 - - -0.63 -0.73
- -0.06 - - - - -1.7 -0.89 - - - - 1.88 2.78 1.86 -
-0.71 2.94 1.67 0.75 0.5 -2.18 -0.85 -3.12 - - -3.05 -1.45 -3.83 - - -
- 2.83 1.44 - - - - - - - - 1.87 - 1.34 - -
-2.63 -0.07 0.76 - - - -0.91 -0.09 - - -1.15 - 1.09 1.99 2.06 -0.03

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.