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Heatmap: Cluster_170 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-1.11 -3.65 0.28 -2.44 2.0 1.61 -0.16 -1.82 0.77 -1.74 -0.92 -1.34 -0.72 -0.49 -0.33 -0.31
-2.37 -3.93 1.03 0.74 0.45 1.36 0.53 0.17 -1.75 -0.86 -0.21 -1.25 -0.49 -0.62 -0.53 0.41
-4.36 -6.42 -1.83 -1.89 1.84 0.65 -3.06 -0.61 -2.9 0.56 -0.48 -1.46 1.79 0.66 -0.7 0.16
-7.34 0.21 0.87 2.43 2.32 1.4 - - - - - - - - - -
-1.91 -0.83 -1.75 -2.3 -0.24 -0.58 -2.53 -1.1 -1.8 -2.58 -0.91 -0.94 0.7 2.04 1.78 0.87
-1.62 1.38 -0.1 -0.39 2.59 0.81 -0.36 -2.56 -2.85 -3.2 -1.37 0.58 -3.1 -2.27 -4.76 -2.7
- - 2.2 0.35 2.48 1.19 1.08 - - - - -2.71 - - - -
- - - - 2.85 1.29 -1.95 - - - - - - - 2.61 -
- - 0.69 1.43 2.56 0.89 1.88 -5.26 - - -3.87 -3.98 - - -3.63 -
-7.5 - 1.79 0.23 2.42 -0.42 1.9 -1.27 - - -2.09 -0.24 - -5.86 - -
- 2.64 - - 3.28 - - - - - - - - - - -
-1.44 -0.38 0.77 0.47 1.41 -0.05 0.7 -0.73 0.1 -0.25 -0.04 -0.01 -1.15 -1.37 -3.08 0.12
- - -1.38 - 3.41 -0.42 - - - - 1.87 -0.82 - - - -
-6.14 - 1.41 0.3 1.84 1.04 -5.94 0.97 -0.18 -0.4 -0.45 0.92 - -5.46 -2.39 -
- 0.3 - - 3.17 - - 0.54 - - 1.55 0.44 - - - -
1.22 0.13 1.67 -0.45 1.7 0.18 0.76 -1.53 - - -2.58 0.02 -2.33 -3.42 -1.35 -1.45
- -1.11 1.41 1.16 1.43 0.06 -1.17 - - - - - -0.59 0.9 1.97 -
- - 1.21 1.91 2.12 1.83 - - -0.02 -0.96 -0.93 - - - - -
- - 0.83 -0.86 2.3 0.25 1.28 -0.56 - - 0.06 1.56 -3.44 - -1.47 -
- - -0.93 - 0.2 2.21 - - - 0.3 - - 0.99 2.7 - -
- - - - 4.0 - - - - - - - - - - -
- - - - - 2.18 - - - - 2.89 - - 2.02 - -
- - 2.14 0.82 1.12 2.51 0.81 -2.41 - - - - - - - -
- - - 4.0 - - - - - - - - - - - -
-3.46 - 1.03 1.66 1.05 -0.38 0.91 -3.74 - - - -2.11 1.24 1.15 - 0.12
- - - - - - - - - - - - 1.76 1.25 0.74 3.1
- 0.89 0.36 -0.3 2.11 1.14 1.0 -1.17 - - -0.93 0.77 - -0.26 - -
-2.23 -2.47 -0.32 - 2.26 1.85 0.83 0.65 -0.65 - 0.25 0.34 - - - -
- - 1.24 1.62 2.41 2.12 -2.52 - - - -1.06 - - -1.98 - -
-2.56 -3.48 -0.3 -0.14 1.97 1.0 0.87 0.17 -0.75 -0.88 -4.54 -2.84 -0.48 0.51 -0.31 -0.16
- -6.49 0.62 0.4 2.13 1.34 1.2 -1.85 -2.94 -2.78 0.06 1.11 - -7.01 -2.62 -
- -0.32 - - 1.47 3.23 - 1.6 - - - - - - - -
- -3.31 1.57 1.0 1.9 2.13 1.38 - - - - -2.23 - - - -
- - - - - - - - - - - - - - - -
- - - - - - - - - - - - - - - -
- 0.5 -1.4 -2.07 0.9 1.02 0.63 0.03 - - -0.73 -0.25 -0.49 0.42 0.49 1.39
- - - -0.45 1.93 - 1.54 - - - - - - - 3.1 -
- - -1.62 -1.03 3.01 1.48 -4.61 -1.2 - -3.32 0.04 -1.8 - 0.04 -0.05 -1.15
- - -2.46 -2.13 2.42 1.89 -0.55 - - - 1.53 1.56 - - - -
-2.58 -3.13 -0.31 -0.26 3.43 1.34 -2.98 -3.28 - - -3.98 - -3.72 -4.81 -1.74 -3.84
-1.19 - -0.08 -0.48 1.69 1.26 0.57 1.92 -1.83 -1.18 -1.74 0.16 - -2.58 -0.51 -
- 1.73 -0.21 -0.88 2.1 0.76 -0.29 - - - - 0.35 - - 1.68 -
- -4.48 -1.13 -3.37 2.37 -0.14 1.03 -2.04 0.82 0.55 - -2.1 - -1.92 1.74 -
- - - - 1.86 1.32 0.14 -0.77 -1.05 - -1.96 - -0.75 0.74 1.81 0.72
-1.41 -0.59 - - - 0.23 -2.22 -2.9 - - - - 1.94 2.58 0.33 1.23
- - - 1.37 1.98 -0.99 - -1.61 - - 0.7 1.18 - -0.14 1.93 -
- - -6.74 - -4.3 -5.75 -5.09 -4.91 - - - -5.13 2.44 2.11 1.46 1.74
- -1.04 1.31 1.5 1.75 0.79 - - 0.08 -0.13 -0.41 - - -0.68 0.81 -
-3.47 -5.02 -0.05 0.14 2.28 1.35 1.64 -3.43 - - -0.46 1.14 -3.59 -5.66 -3.62 -3.71
- 2.27 - - - 2.99 - - - 1.68 - - - - - -
- 0.84 - - 0.94 2.69 0.69 - - - 0.57 1.45 - - - -
-1.96 -0.13 1.67 1.19 -0.01 1.15 - 1.01 - - - - - -0.33 1.75 -
- - - - - - - - - - - - - - - -
-9.67 - 0.96 -0.02 2.26 0.92 1.93 -4.22 - - -2.59 1.23 - - - -
- - - 0.24 0.73 1.75 -0.38 -0.51 -1.07 -1.02 -0.97 - - 0.68 - 2.39
- - -0.07 -1.48 -0.68 0.38 -0.16 - -2.81 - - -2.82 - 1.51 3.07 -1.61
-1.37 -2.04 0.23 -1.01 0.82 0.75 -0.8 0.66 -1.74 -1.12 -0.39 -1.37 1.29 0.09 0.3 0.51
- - 1.83 -0.44 2.72 -0.14 2.0 -5.92 - - - - - - -2.7 -
-0.15 - 1.72 1.48 -0.74 0.7 0.05 - - - -0.17 -0.27 - - 2.02 -
-1.19 0.02 - - 1.44 0.14 1.07 1.71 - - 1.2 1.09 - - - -0.07
0.17 -0.93 0.46 -0.36 0.24 0.61 -0.44 -2.1 -1.56 -0.73 -1.08 -1.72 1.11 0.73 0.9 0.15
-1.51 -0.57 -0.95 -1.09 -0.05 -0.64 -1.37 -1.3 -1.04 -1.37 -0.69 -0.43 1.46 0.96 1.26 1.18

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.