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Heatmap: Cluster_102 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.58 -1.32 -0.72 0.03 -1.07 -0.41 0.22 -0.22 0.3 0.86 0.76 -0.11 0.42 0.02 -0.74 0.53
-4.3 -2.04 -0.09 0.44 -0.11 -0.54 -0.45 -1.18 1.59 -0.07 1.07 -1.61 0.84 -0.18 -1.08 0.11
-1.42 -1.17 -2.86 -3.18 -4.32 - -3.18 -0.94 -0.08 0.75 0.95 0.05 1.47 0.31 0.96 1.44
- -0.88 - - - - -1.99 - 0.26 1.32 0.94 - - -0.5 3.15 -
-1.06 0.76 - - - - - - 2.01 2.06 2.1 0.41 - - - -
-0.35 0.17 -0.11 0.22 -0.52 -0.11 -0.1 -0.85 0.53 0.61 1.04 0.77 -0.86 -1.19 -1.49 -0.3
-0.38 -1.07 -0.21 -0.26 -0.66 -1.06 -0.22 0.38 0.62 0.59 0.33 0.66 0.1 0.03 -0.15 -0.14
-0.03 -0.62 -0.15 0.14 -0.25 -0.12 0.45 0.21 0.58 0.54 0.45 -0.06 -0.16 -0.51 -1.39 -0.28
-0.94 -1.11 -0.41 -0.08 -0.95 -0.52 0.11 -0.11 0.79 1.02 0.75 0.04 0.42 -0.2 -0.81 -0.22
-1.36 -0.08 -1.12 0.18 -1.36 -1.45 -2.63 -1.66 1.88 1.16 1.65 -0.18 -1.68 -1.59 -0.84 -0.5
0.02 -0.41 -0.48 -0.06 -0.33 0.1 0.1 -0.05 0.78 0.68 0.8 0.17 -0.47 -1.03 -1.27 -0.27
1.97 1.59 - - -6.56 - - - 1.74 0.86 1.46 0.08 -5.78 - -4.81 -5.9
-0.12 -0.73 -0.24 0.15 -0.63 0.08 -0.11 -0.47 0.42 0.37 0.74 -0.09 0.23 -0.18 -0.76 0.37
-1.3 -0.92 -1.18 -1.45 -1.68 -1.96 -2.21 -2.85 -0.34 -1.18 -0.27 -2.63 -1.98 -1.12 3.3 -0.79
-0.23 -0.3 -2.36 - - -1.07 -1.03 -2.31 1.67 1.08 2.39 0.52 - - - 0.02
- 0.29 - - - - - - 2.83 1.29 2.38 - - - - -
0.11 0.13 -0.66 -0.07 -1.12 -0.33 0.83 -0.66 0.25 0.96 0.74 0.1 -0.66 -0.95 -1.5 0.25
-0.01 0.27 -1.08 -0.38 -1.28 -0.86 1.3 -0.29 0.83 1.24 1.06 0.5 -2.29 -2.84 -4.12 -1.79
-0.72 -1.8 -1.25 - -1.12 -2.29 -0.92 -0.9 1.91 1.55 1.59 1.12 - -1.43 - -0.46
0.1 -0.89 -0.19 0.16 -0.59 -0.44 0.21 -0.26 0.46 0.69 0.8 -0.15 0.18 -0.4 -1.0 -0.02
-0.74 -1.05 -1.25 -0.48 -3.13 -0.47 -0.17 -0.75 1.36 1.21 1.25 0.17 0.07 -0.41 -1.17 -0.28
-0.2 -0.25 -0.37 0.13 -0.66 -0.65 0.24 -0.03 0.6 0.9 0.59 0.09 -0.26 -0.49 -0.76 -0.16
-0.08 -0.15 -1.66 -1.26 -1.16 -1.26 -1.22 -1.12 0.81 1.23 1.09 0.54 0.27 -0.3 -0.68 0.43
-0.24 -1.29 -0.8 0.02 -1.26 -0.1 0.24 0.03 0.83 0.81 1.02 0.07 -0.01 -0.82 -1.74 0.2
0.75 0.37 -2.24 -1.24 -2.27 -1.58 -1.4 -1.99 1.59 1.31 0.91 0.01 -0.47 -0.69 -1.28 0.11
-0.77 -0.53 0.13 0.39 -0.47 -0.26 0.29 -0.52 0.69 0.54 0.94 1.05 -0.98 -1.62 -1.47 -0.79
- - - - - - - - 1.14 2.2 2.82 1.13 - - - -
0.12 0.14 -0.5 -0.32 -0.52 -0.13 -0.41 -0.58 0.99 0.14 0.71 0.17 -0.38 -0.57 -0.61 0.41
- -3.67 -0.75 -0.66 0.07 0.02 -0.43 0.06 1.14 0.31 0.4 -1.8 0.9 -0.61 -0.54 1.36
-0.56 0.4 -4.07 -2.41 -3.36 -2.94 -4.16 -4.27 2.12 1.18 1.32 1.23 - -2.41 0.61 -2.01
0.46 1.24 -0.16 0.77 -3.04 -3.18 -3.83 - 1.7 0.51 1.14 -0.23 -1.26 - -0.28 -1.38
-2.83 -2.99 -0.93 -0.6 -0.64 -0.41 -4.3 -3.11 1.64 1.62 1.45 1.53 -0.91 -1.49 -2.74 -2.84
0.13 -0.01 -0.26 0.22 -0.22 -0.1 0.26 -0.55 0.58 0.72 0.78 0.28 -0.66 -1.28 -1.43 -0.42
0.16 0.43 -0.49 0.26 -0.13 -0.32 0.44 -0.28 0.5 0.71 0.92 0.38 -1.17 -1.78 -2.21 -0.88
0.05 -0.62 -0.23 0.23 -0.26 -0.01 -0.08 -0.71 0.82 1.01 0.86 0.33 -0.48 -1.35 -1.82 -0.61
1.64 1.19 - -5.47 -4.14 -4.83 -6.51 - 2.09 0.92 1.62 0.25 - -4.03 - -
-1.21 -4.91 -2.11 -1.91 -3.81 -1.9 -4.1 -1.07 0.46 1.8 2.3 -0.04 0.23 -0.73 -0.49 -0.13
0.77 -0.07 -1.92 -1.88 - - - -3.07 2.37 1.35 1.78 0.63 - - - -
-0.36 -0.67 -0.02 -0.16 -1.65 -0.89 0.16 0.07 0.62 0.91 1.21 0.7 -0.76 -1.36 -1.53 0.02
-2.33 -2.98 -2.72 -2.38 -4.91 -2.61 -2.54 0.6 2.15 1.43 1.43 1.09 -1.54 -0.99 -1.96 -1.41
0.11 0.57 -2.33 -2.44 -1.3 -1.32 -3.74 -3.53 1.56 1.8 1.53 0.56 -1.32 -2.83 -1.02 -1.86
-0.15 -0.11 -0.17 0.43 -0.26 -0.0 -0.18 -0.78 0.66 0.84 0.85 0.71 -0.95 -1.34 -1.5 -0.83
-0.38 0.26 -3.16 -2.83 -4.42 -1.73 -4.36 -2.65 2.01 1.85 1.78 0.94 -3.28 -4.6 -4.21 -4.58
0.25 0.2 -1.59 -1.47 -1.04 -0.86 -0.56 -1.06 1.22 1.01 0.95 0.66 -0.93 -0.54 -0.54 0.04
0.15 -0.23 0.05 0.27 0.1 -0.1 -0.03 -0.54 0.5 0.66 0.46 0.13 -0.48 -0.83 -1.27 -0.04
-1.05 0.34 -0.58 -0.25 - - -2.25 -2.65 1.31 0.86 0.08 - -0.67 -0.18 2.3 -0.79
-5.69 -5.11 -0.29 -0.22 -3.49 -3.61 -1.83 1.26 1.15 1.22 1.7 1.37 -2.22 -1.77 -1.06 -4.19
-0.28 -1.28 -0.16 0.15 -0.49 -0.71 0.11 0.39 0.85 0.33 0.2 0.1 -0.38 -0.24 0.72 -0.94
-0.17 -1.68 - - - - -6.05 -2.74 -0.71 -1.37 -1.01 -2.49 1.91 1.61 1.8 1.41
0.26 -0.02 -0.26 0.35 -0.51 -0.0 -0.24 -0.48 0.6 0.39 0.22 -0.19 0.09 -0.42 -0.77 0.23
-0.25 0.01 -0.57 0.02 -0.59 -0.69 0.02 -1.21 0.67 0.76 1.09 0.8 -0.48 -0.77 -1.69 -0.06
-1.57 -2.28 -0.36 -0.07 -0.01 -0.03 0.27 -0.67 1.26 0.76 0.6 -0.78 0.6 -0.75 -1.45 0.32
0.04 -0.33 -0.28 0.19 -0.34 -0.26 0.02 -0.48 0.59 0.71 0.76 0.13 -0.08 -0.62 -1.11 -0.21
-0.75 -1.29 -0.51 -0.12 -0.07 -0.0 0.36 -0.07 0.64 0.8 0.87 -0.65 0.45 -0.62 -1.15 -0.06
0.31 -0.05 -2.74 -3.67 -1.33 -2.55 -2.74 -1.28 1.24 2.09 2.12 0.34 -4.4 -3.5 - -3.53
-1.01 -1.82 0.04 0.32 0.21 -0.17 0.7 0.35 1.26 1.01 0.44 -0.46 -1.17 -1.4 -1.97 -1.27
0.17 0.02 -6.03 -1.69 -1.14 -2.48 -2.24 -1.39 1.09 0.93 0.83 0.03 0.82 0.28 -0.65 0.89
-0.18 -0.36 -0.07 0.31 -0.05 -0.61 0.38 0.55 0.74 0.6 0.36 -0.32 -0.26 -0.9 -1.54 -0.37
-0.23 -0.31 -1.33 -0.35 -1.24 -0.95 -2.24 -2.82 0.5 -0.03 -0.05 -1.4 -3.01 -1.73 2.88 -1.52
-4.29 -3.1 -3.11 -3.08 -2.89 -5.56 -2.25 -1.54 2.07 1.78 1.85 1.65 - -2.96 -1.9 -2.99
1.02 -0.9 -1.37 -0.96 -4.22 - - -9.8 1.75 1.24 2.4 0.57 - - - -
-0.03 - 0.96 -0.01 -2.27 - - - 0.65 1.27 2.25 1.65 - - - -
-0.15 -0.18 -2.12 -2.11 -3.43 -2.72 -0.81 -1.12 1.67 1.04 1.29 0.37 0.0 -0.6 - 0.88

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.