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Heatmap: Cluster_40 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.82 2.47 -1.02 -0.37 -1.37 -1.0 0.02 -0.22 -0.99 -1.46 0.74 -1.59 -0.39 -1.1 -2.12 0.61
- 3.75 - -5.16 -2.55 -3.94 0.31 -0.13 - - - - -2.58 - - -
- 3.16 - -1.25 - 0.7 1.06 - - -0.94 - - 0.32 0.23 - -
-4.91 3.23 -1.33 -0.82 -0.58 0.13 0.57 -1.19 -1.34 -2.82 -0.61 -0.5 -6.58 - - -6.84
- 3.33 -0.52 -0.55 -0.62 0.01 0.76 -0.76 - -4.64 -3.61 -1.39 -3.36 -4.46 - -
-0.5 2.01 - - - - -0.13 - - - - - - 3.37 - -
-1.34 2.64 -1.84 -1.85 -2.01 -2.32 0.55 -0.17 0.04 0.27 -0.4 -0.53 -0.64 -0.71 -1.75 -0.38
-0.62 2.27 -0.89 -0.22 -0.34 -0.43 0.59 -1.76 -2.06 -2.42 -1.65 -2.27 0.18 -1.02 -1.76 1.54
- 3.61 - - - - 1.39 0.25 - - - - - - - -
-1.74 3.22 -1.71 -1.1 -2.32 -0.14 0.91 -5.71 - - -3.33 -1.44 -0.54 -3.22 -0.15 -1.25
-2.52 2.01 - - - -1.74 -0.6 -1.53 - -1.05 - - 2.64 - 1.92 -
-1.53 3.38 -3.56 - -5.01 - 1.08 -0.47 0.43 -0.7 -4.48 -3.0 - -3.33 - -3.46
-2.98 2.94 -1.35 -1.4 -2.22 -0.78 0.4 0.51 0.42 0.26 -1.9 -1.91 -1.61 -2.3 -5.79 -1.86
- 3.58 -3.15 - -3.01 -3.19 -0.5 - - - - -1.01 - - 1.33 -
-0.52 2.93 -1.28 -1.34 -0.82 -0.35 0.6 -2.01 -1.59 -2.03 -0.07 -0.16 -1.3 -1.96 -2.84 -0.97
-0.2 3.01 -3.71 -2.52 -0.61 -1.34 -0.1 -1.11 - -6.54 -2.18 -3.44 -0.13 0.31 -1.47 0.6
-1.25 2.98 -3.23 -3.25 -4.19 -2.85 1.19 -0.9 -0.47 -0.95 -0.09 -0.2 -1.48 -1.68 -1.58 -1.35
-3.46 3.01 - - -0.92 -0.94 0.94 -0.47 -0.5 - -1.38 -0.5 - -1.15 0.92 -
-4.5 3.16 -1.72 -3.94 -0.19 -2.64 1.24 0.94 -6.22 -7.16 -2.86 -0.23 -3.72 -3.74 -3.59 -3.43
-0.3 2.52 -1.35 -2.2 -1.4 -2.35 0.07 -1.34 -2.4 -2.8 -2.18 -2.87 1.07 0.07 0.37 0.77
-1.84 2.82 -2.22 0.0 -0.26 -1.61 0.49 -1.3 -3.45 - -2.04 -0.22 0.05 -1.05 -0.15 -0.24
- 3.83 - - - - 0.83 - - - - - - - - -
-3.95 3.18 -3.15 -2.82 -2.44 -1.38 0.7 0.22 -1.99 -0.2 - -2.0 -2.24 -3.33 -1.26 0.22
- 3.77 -2.37 - -2.24 -2.4 0.28 - -1.8 - - -1.81 - - - -
-5.72 2.67 -1.06 -1.47 -3.25 -3.01 0.29 1.18 - - -0.32 -1.25 -0.24 0.31 0.51 -1.59
- 3.69 -2.83 - -2.22 -2.85 -0.21 -1.56 -4.13 -4.82 -6.36 -4.14 -2.06 -1.55 -1.89 -1.26
-1.32 3.29 - -2.09 -2.31 -0.87 0.98 - - - -1.73 - - - - 1.35
-0.8 2.68 -0.85 -0.7 -0.89 0.32 0.7 -2.59 - -6.06 -4.44 -3.43 -0.49 0.64 0.48 -1.2
0.65 3.37 - - -1.91 - 0.6 -0.99 - - - - - - 0.84 -
-1.88 3.36 -1.03 - - - -0.7 -0.24 - - - - 0.88 - - 0.75
-2.47 3.03 -1.79 -3.77 -2.61 -1.82 0.62 -1.51 - -5.79 0.95 -0.16 -1.14 0.23 -1.55 -3.06
-0.52 2.66 -0.69 -1.8 -1.18 -1.5 0.58 -0.56 -5.94 - -1.96 0.03 0.28 0.49 -2.53 0.02
-6.01 2.8 -0.94 -0.34 -1.19 -1.14 1.28 0.58 0.21 -2.95 -0.58 -0.31 - -7.75 -3.31 -5.19
- 3.28 -0.43 -2.81 -0.54 -2.17 0.62 -4.78 -3.57 -1.51 -0.48 -2.0 - -0.14 -1.24 -2.34
- 3.13 - - -1.17 - 1.68 - -1.68 1.55 -1.58 - - - - -
- 3.34 - - - - 1.01 - - - - - 1.95 - - -
- 3.2 - - -0.2 -1.37 1.32 - -0.76 - 0.34 0.23 - - - -
-0.63 1.73 -0.45 -0.86 -0.57 -0.08 -0.31 -1.2 -1.0 -1.25 -0.98 -0.9 0.63 0.6 0.19 0.78
-0.58 1.96 -1.81 -1.43 -1.6 -1.5 0.44 -0.24 -0.83 -1.26 -0.48 -1.84 0.56 0.79 0.57 0.3
-4.37 3.39 -0.4 -0.01 0.11 -0.61 0.55 -6.77 - - -3.41 - - - -1.22 -
-0.45 3.03 -3.8 - -2.1 -2.83 0.22 0.62 - - -0.29 0.38 -0.32 -2.0 -0.93 -2.02
0.81 3.26 -2.74 -2.15 -1.92 -1.75 0.46 -0.98 -3.46 -3.94 -1.04 -3.08 -1.39 -1.71 -2.54 -2.24
-0.09 2.75 -0.21 -2.25 -0.96 -1.72 1.12 -1.01 -1.28 -2.22 -1.92 -1.35 -1.28 -0.08 -0.45 -1.3
- 3.3 -3.48 -1.82 -0.52 -4.25 1.14 0.98 -5.23 - -1.96 -1.28 -3.08 - - -4.01
-4.82 1.86 -2.68 -3.56 -3.38 -1.92 -0.21 -0.44 -3.88 - - -4.89 1.22 1.31 0.85 1.78
-0.61 2.01 - - -1.62 -0.76 0.17 -4.42 - -1.08 -1.04 - 0.17 -0.93 2.73 -
- 0.83 - -2.52 -2.73 -1.89 -1.55 -0.82 - - - - 0.07 1.48 2.0 2.28
0.72 2.87 -0.63 -0.43 -0.58 -1.07 0.18 -0.11 -0.39 -0.62 -1.47 -1.18 -4.37 -4.46 -3.98 -3.75
-3.74 3.46 -2.95 -3.73 -1.76 -2.77 1.05 -1.65 -5.07 -2.69 0.15 -0.95 - -4.24 - -
- 3.62 -4.12 - -0.66 -2.15 1.44 - - - - -3.56 - - - -
0.19 2.28 -1.91 -1.42 -1.04 -1.17 0.55 -1.03 -0.47 0.06 -0.06 -0.38 -0.53 -0.5 -0.64 -0.05
-0.68 2.24 -0.29 -0.06 -0.73 -0.43 0.52 -1.2 -1.55 -1.87 -0.35 -0.62 -0.04 -0.6 0.26 -0.4
- 2.59 -2.94 -1.02 -1.22 - 0.2 -0.95 - - - -2.37 0.56 - 1.54 1.44
-2.2 3.4 - - - - 0.12 -3.0 -1.3 - 0.79 -1.31 - - -0.03 -1.12
-5.38 2.48 -0.13 -1.09 -3.46 -0.72 0.1 0.24 -4.02 -1.64 -2.93 -1.71 1.23 0.04 - 0.9
-0.69 2.1 -2.82 -1.3 -2.54 -1.08 0.6 -2.33 -2.88 -1.98 -5.1 - 1.29 0.37 0.64 1.31
-0.01 1.78 -0.91 -0.71 -0.87 -0.83 0.6 -0.19 -0.15 0.14 -0.06 -0.74 0.02 -0.37 -0.88 0.07
-0.62 2.68 -1.32 -2.63 -1.8 -3.3 -0.12 -3.36 -3.58 -2.52 -2.2 -3.81 -3.47 -1.11 2.55 -5.18
-2.2 3.08 -4.1 -4.74 - -1.52 0.28 -0.47 0.12 0.87 -0.28 -1.48 -0.88 -3.3 - -2.33
-1.34 2.32 -1.43 -2.46 -0.79 -1.03 -0.11 -0.61 -2.55 - -2.56 -1.95 0.22 1.49 0.92 -0.09
-7.14 3.11 -0.6 -0.05 -0.86 0.45 0.88 -4.32 -2.16 -5.74 -0.85 -0.55 -3.46 -2.47 -4.48 -3.0
-3.09 1.2 -2.81 -2.11 -2.83 -2.48 -1.94 -3.44 -5.65 - -2.56 -2.86 1.57 2.18 0.86 1.53
-4.79 3.74 - -2.65 -1.85 -2.02 0.07 -2.26 -1.82 -1.35 - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.