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Heatmap: Cluster_92 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -1.5 -0.58 -1.96 -0.95 3.25 -1.07 - - 1.04 1.12 - - - -
- - - -3.06 -1.67 - 2.45 -6.03 - - 0.27 -0.02 1.11 1.02 -0.5 1.58
-2.02 - -2.2 -1.85 0.14 0.06 3.17 -2.53 - -2.11 -0.74 -0.27 0.29 -1.98 -0.91 -2.01
-4.25 -2.8 -1.33 -3.77 -4.0 -3.59 3.54 -1.16 -2.67 -4.62 -1.09 0.47 -1.31 -1.08 - -2.43
- - -0.2 -2.01 -1.31 0.39 3.23 -5.23 - - -0.96 1.7 - - - -
- - -4.7 -2.78 0.64 -0.74 3.67 -2.89 - - -2.04 -0.82 - - - -
- - -0.21 0.12 -2.89 0.63 3.5 -3.87 - - -2.35 -0.28 - - - -
0.01 -3.16 -1.63 -4.1 0.53 -0.19 3.36 -2.59 -3.87 - -3.77 -2.56 -1.94 -1.62 - -0.19
-2.74 -0.92 -1.88 - -1.76 0.42 3.4 - - - - 1.51 - - - -
- - -2.22 -1.89 1.16 - 3.63 -3.88 - - - - - - -0.33 -
-3.44 -4.18 -3.49 -4.19 -1.01 -2.76 3.55 -1.74 -6.16 -7.84 0.62 -0.59 -1.92 -2.41 -3.35 -1.67
-0.91 -0.82 -1.41 -1.14 -1.12 -1.08 2.16 -0.13 -5.02 -4.59 -0.27 -0.42 0.85 0.73 0.2 0.59
- - -0.32 -0.39 - -0.41 3.12 -4.44 - - -0.02 1.68 - - -0.45 -
-0.99 - 0.05 -2.78 -0.99 0.76 3.5 -1.89 - - -0.84 - - - - -
0.55 -0.95 -1.19 -1.17 0.13 -1.42 2.75 -2.57 -2.96 -2.48 -0.54 -2.03 0.41 -0.3 -1.91 0.16
- - -0.98 -1.44 0.13 0.75 3.34 -3.53 - - -2.1 0.95 - - - -
-4.15 - -3.38 -0.8 -0.04 -0.13 3.36 -2.57 - -4.76 -0.55 1.15 - -4.56 - -
- - -1.51 -1.1 -4.34 -1.83 3.75 -2.55 - - -1.92 0.01 - - - -
- -3.62 -2.0 -1.08 -2.88 0.77 3.04 -0.12 -2.41 - -0.73 0.9 - -0.61 -0.12 -
-3.51 - -0.53 0.25 -0.44 -0.87 3.1 -1.57 - - -1.03 1.22 -2.2 -1.71 -2.81 -1.59
-0.22 - -3.04 -2.38 -0.28 -0.21 2.89 0.55 -4.43 - 0.42 -0.2 -1.55 -0.78 -2.16 -0.26
-1.58 -1.3 -3.22 -1.83 -1.14 -0.76 1.6 -0.64 -2.25 -2.25 -0.78 -0.43 1.27 0.91 0.81 1.24
- - - - - - 2.51 - - - 0.25 - 0.5 - 2.95 -
- - -2.5 -2.14 - - 1.89 -1.25 - - -0.19 -1.88 1.71 1.48 0.35 1.58
- - - -1.11 0.66 -0.48 3.12 -0.68 - - 0.25 1.46 - - - -
-5.83 -2.99 -0.75 -0.83 -1.13 -1.02 3.23 -0.6 - - 0.49 1.1 - -4.25 - -3.28
- - 0.24 -0.9 -1.22 0.41 3.33 -2.07 - - -1.2 0.66 -3.14 -3.24 - -
- - -1.52 -1.49 -2.73 -3.85 3.56 -2.46 -1.21 -3.16 0.06 0.48 - -3.04 - -
-6.36 - -1.22 -0.21 -1.42 -0.72 3.27 -2.04 - - 1.28 0.31 - - -2.66 -
-1.65 - -0.8 -0.03 -0.33 -0.54 2.69 -0.22 -1.33 -1.46 0.29 0.75 -1.39 -0.48 - -0.77
- - -3.14 -1.44 -0.42 -0.43 3.63 -3.75 -7.35 -8.29 -0.27 -0.5 - - - -
-5.72 -2.57 -2.4 -2.89 -1.18 -0.28 2.81 -3.09 -4.35 -2.38 -3.45 -3.04 -0.01 1.24 0.77 0.65
- - -2.73 -4.98 1.01 -1.72 3.7 -4.0 - - -2.64 -2.52 - - -3.01 -
- - -1.26 -0.55 -0.73 -1.01 3.52 -3.8 - - 0.39 -0.03 - - - -
-4.0 -1.74 -1.23 -1.32 -1.51 -0.27 3.13 -0.23 -2.67 -1.61 -0.25 0.13 - - 0.66 -
-3.06 -4.86 -2.73 -2.09 0.2 -0.53 3.2 -1.15 -0.77 -1.21 0.3 0.37 -3.21 -2.83 -4.24 -2.99
- - -2.47 - -0.12 0.12 3.41 -1.85 - - -0.14 1.0 - - - -
- - -4.68 - -0.84 0.61 3.78 -4.01 - - - -4.12 - - - -
- - - - 0.44 -0.84 3.78 -4.8 - - -2.83 -2.61 - - - -
- -3.46 -3.24 -3.91 0.06 -0.96 3.37 -1.49 - -3.03 0.87 0.57 - - - -4.45
-3.17 -0.9 -0.64 -1.34 -0.18 -0.12 2.62 -0.03 -0.66 -0.19 0.48 0.42 -1.85 -1.44 -2.31 -1.76
- - - - - -2.37 3.67 - - - 1.34 -0.77 - - - -
- -3.51 -2.75 -3.64 0.46 -2.42 3.43 -4.21 -3.4 - -2.89 -2.19 0.06 -0.74 -0.67 -0.77
- - -1.58 -2.24 1.03 0.25 3.43 -4.44 - - -1.59 0.01 - - -4.39 -
- - -0.42 - - - 3.67 -1.67 - - -0.11 0.37 - - - -
- - -1.47 -0.55 - 0.95 3.26 -0.55 - - -0.21 0.9 - - - -
- - -1.86 -2.52 0.44 -0.08 3.52 -2.35 - - -1.18 -2.28 - -0.05 - -
- - -0.92 -3.65 -0.62 -2.39 3.37 -2.38 -1.67 - 0.01 1.44 - - - -
- - -0.04 - -2.23 - 3.33 -1.02 - - - -0.78 - - 1.88 -
- - -0.88 -0.65 -0.46 -0.2 3.39 -2.3 -3.27 -2.4 -0.22 0.33 - - -2.95 -
-6.27 -2.87 -5.45 -4.14 0.77 -3.14 3.74 -4.23 - - -1.76 -2.89 - - - -3.69
- - -2.17 -2.51 1.21 -2.62 3.62 -5.24 - - -1.17 -1.6 - - - -
-1.01 -3.64 -2.74 -2.78 -1.74 -0.89 2.07 -0.14 -3.04 -1.71 0.22 -1.08 0.95 1.38 -0.14 0.72
-6.39 - -3.03 -2.65 -1.49 -1.21 3.43 -2.09 -4.99 -4.34 1.61 -0.68 - - -2.68 -
- - -2.17 -4.16 0.33 - 3.78 -4.36 - - -0.99 -2.91 - - - -
- - -1.7 -2.5 -0.18 -1.72 3.67 -4.9 - - -1.31 -3.0 - -4.35 0.04 -
- - -0.54 - 1.15 -2.56 3.69 -5.03 - - - - - - - -
- - -2.1 -1.77 0.45 -2.55 3.71 -4.77 - - -0.65 -2.68 - - - -
-5.85 -3.64 -1.15 -0.46 -0.06 -0.73 2.97 0.49 -0.76 -0.55 0.8 -0.22 -6.85 -6.36 -8.2 -5.97
- -1.11 -1.87 - -0.77 - 2.72 -0.7 - - -1.14 0.33 1.02 -0.08 - 1.48
-4.18 -4.77 -3.13 -3.45 0.03 -0.45 3.7 -0.42 - -4.96 -2.61 -5.03 - - - -
-1.28 -2.16 -0.83 -0.72 -1.7 -0.39 2.71 -1.24 -3.61 -1.96 0.66 -0.27 0.92 -0.53 -2.52 -0.68
-0.49 -2.81 -0.26 -0.79 -1.28 -1.74 2.12 -0.71 -0.79 - -1.01 0.41 0.18 0.09 0.16 1.23
- - -0.57 -1.49 -1.7 -0.37 3.53 -1.32 -4.19 -3.81 -0.67 -0.12 - -4.38 -2.9 -3.41
- - -0.21 -2.3 -0.22 -0.28 3.19 -4.39 - - -2.77 1.97 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.