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Heatmap: Cluster_285 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.07 -0.54 0.73 1.24 0.52 0.49 -0.15 -0.35 0.45 0.43 0.15 -0.01 -1.86 -2.41 -2.6 -1.41
-7.41 - 1.1 2.37 0.91 0.62 0.18 -2.67 -0.49 -3.4 0.78 0.25 -4.7 -4.21 -3.73 -3.24
-2.12 -1.48 1.63 1.94 1.06 0.67 -0.62 -1.27 -0.83 0.65 -0.45 -0.54 -4.07 -6.3 -6.5 -3.25
-1.54 -1.01 1.79 2.24 0.3 0.61 -1.33 -0.8 -2.78 -2.55 -0.32 -0.47 -1.43 -1.76 -1.59 -1.27
-2.6 -1.73 1.59 1.68 1.05 -0.2 0.51 -2.05 0.01 -0.26 0.33 0.61 -4.79 -5.57 -4.82 -
-0.22 -0.64 1.04 1.27 0.34 0.36 -0.22 -0.53 0.17 -0.02 0.07 0.15 -1.1 -1.62 -1.42 -1.03
-1.74 -1.26 1.07 1.31 0.79 0.23 0.4 -0.36 -0.17 0.29 0.6 0.11 -1.39 -2.7 -3.04 -1.54
-0.92 -1.22 1.3 1.55 0.92 0.58 0.09 -0.57 -1.58 -0.93 0.31 -0.16 -1.47 -1.87 -2.08 -0.62
-5.22 -7.58 1.78 2.0 1.31 -1.16 -1.75 -1.55 -2.24 -1.78 -1.45 -0.95 -1.03 -1.25 1.25 -1.79
-0.61 -0.89 1.39 1.76 0.23 0.61 -0.78 -0.82 0.31 0.29 -0.6 -0.49 -2.07 -1.99 -2.07 -1.35
-0.54 -1.06 1.36 1.91 0.49 0.63 -0.6 -0.9 -4.04 -3.18 0.34 0.03 -1.03 -1.22 -1.02 -0.98
-1.02 -0.65 1.24 1.51 0.79 -0.01 -0.86 -1.34 0.05 -0.21 0.05 0.24 -0.87 -1.07 -1.68 -0.84
-4.15 - 1.79 2.12 0.61 -1.18 -0.13 0.11 -1.39 0.48 0.29 0.25 - - - -
-7.53 -2.38 1.3 2.63 -0.48 0.96 0.88 -0.46 -1.68 -4.08 -0.72 -1.03 -2.48 -3.09 -3.83 -3.93
- - 2.03 2.5 1.17 0.78 -1.31 0.21 - - -0.42 - - - - -
-2.21 -2.24 1.45 1.66 0.84 -0.41 -0.77 -0.35 0.38 0.11 0.07 0.0 -1.49 -1.78 -1.89 -1.23
-5.78 -5.81 1.68 2.62 0.98 0.25 -2.5 -4.01 -1.31 -0.12 0.11 -0.38 -6.16 -6.26 - -7.29
-0.53 -0.33 1.46 1.71 0.8 0.1 -0.26 -0.98 -0.44 0.18 0.12 -0.45 -2.41 -2.8 -3.4 -2.13
-0.91 -2.99 1.83 2.62 0.77 -0.06 -1.25 -5.97 -4.76 -3.7 -0.44 -0.22 -2.29 -2.04 -2.21 -2.65
- -0.83 2.14 2.85 0.69 0.9 - - - - -1.56 - - - - -
- - 1.96 2.53 - 1.36 -0.3 - - - - 1.56 - - - -
-0.49 -0.38 1.14 1.62 0.21 0.38 -0.6 -1.34 0.22 -0.06 0.13 0.04 -1.36 -1.5 -2.1 -1.0
-5.88 - 2.13 2.5 0.97 0.77 0.09 -1.86 - -1.87 -3.84 -0.89 -4.18 - - -4.3
- - 1.93 2.74 1.42 0.67 - - - 0.08 -2.21 - - - - -
- -4.63 1.76 2.1 1.57 1.0 -4.69 - -1.1 1.22 -2.33 -1.85 - - - -
-3.37 -1.57 1.22 1.12 0.91 -4.71 -2.12 -3.05 -2.1 -2.78 - -5.43 -1.64 -0.36 2.75 -0.83
- -4.37 1.38 1.7 -0.75 0.69 -0.58 -1.03 -0.58 -3.19 0.22 0.29 -0.69 0.41 -2.52 0.55
-0.86 -0.62 0.88 1.49 0.25 0.78 -0.03 -1.23 -0.88 -0.42 0.83 0.1 -1.48 -1.66 -1.53 -0.55
-2.95 -2.56 1.42 1.84 0.68 0.34 0.37 -2.03 -0.72 -0.02 0.12 0.26 -1.87 -2.02 -3.27 -0.94
-6.41 -7.16 2.17 1.72 -1.01 0.76 -4.16 -1.87 -0.31 -0.56 0.5 1.4 - - -2.73 -
-1.69 -0.38 1.39 1.86 0.65 0.74 0.25 -0.49 -3.21 -1.71 -0.12 -0.64 -0.96 -1.67 -2.02 -1.05
-1.86 -0.6 1.29 1.18 0.67 0.31 0.56 -1.41 0.28 0.28 0.3 0.46 -2.79 -2.77 -3.01 -2.13
-3.7 -4.3 1.49 2.44 0.79 0.18 0.52 -1.0 -6.34 -4.69 -1.44 0.5 -4.24 -2.74 -0.51 -3.33
- -0.66 2.03 1.06 0.3 0.7 -0.42 -2.87 -2.35 - 0.84 0.81 -2.01 - 0.55 -
-8.43 -2.04 1.64 2.42 0.11 0.85 -0.92 -1.52 - - 0.93 0.6 -4.6 - -4.63 -
-2.54 -2.63 1.17 1.65 0.78 0.78 -0.63 -0.84 0.55 0.44 -0.17 0.07 -1.88 -2.33 -2.26 -2.34
-5.55 -0.92 2.04 2.19 1.14 -0.35 -2.72 -6.64 -7.0 -4.36 -2.74 -2.37 -1.57 0.32 0.07 -0.83
-0.87 -3.09 1.48 2.04 0.54 0.62 -0.57 -1.15 -1.27 -1.13 0.82 0.31 -3.17 -3.19 -3.01 -3.15
- - 1.8 3.18 -0.6 0.69 -0.63 -8.63 - - -4.32 - - - -1.5 -3.19
-0.14 -0.53 0.52 1.06 0.06 0.77 -0.51 -0.83 -0.37 -0.11 0.48 0.13 -0.54 -0.71 -1.24 -0.06
- - 2.05 2.81 0.51 1.18 -2.94 - - - -0.69 -1.53 - - -3.97 -
-3.3 -4.27 1.41 2.11 0.65 0.25 -0.08 -1.44 -0.56 0.69 0.12 -0.21 -2.58 -3.3 -3.21 -2.6
-5.34 - 2.0 2.4 0.56 0.7 -4.96 - -5.16 -1.43 0.97 0.18 - -4.72 -5.65 -6.75
- - 2.47 2.37 -0.36 0.84 - -1.38 - - - - - -2.0 1.07 -
-1.56 -1.12 2.12 2.19 1.43 -0.19 -0.45 -1.16 -4.78 -4.84 -3.41 -2.56 -1.43 -1.82 -2.34 -1.47
-4.28 -3.24 1.92 1.52 1.93 0.52 0.31 -2.31 -0.76 -2.28 -1.02 -0.18 - - -1.61 -
-0.95 -0.18 1.01 1.57 0.28 0.91 -0.47 -0.94 -0.27 -0.27 0.49 0.53 -2.36 -2.53 -2.79 -1.97
-1.42 -1.53 0.3 -0.06 0.3 -0.86 -0.43 -0.66 -1.09 -1.19 -1.23 -0.51 1.18 0.91 0.94 0.87
-2.01 -0.86 1.05 1.72 0.49 1.12 0.29 -0.92 0.66 0.01 -0.06 -0.21 -5.44 -5.8 -5.05 -4.56
-4.1 - 1.88 2.28 -0.45 0.43 -1.52 -4.18 -6.23 -6.17 -3.14 -3.44 -1.01 -2.42 1.91 -2.09
-1.59 -1.47 1.18 1.34 0.23 0.19 0.13 -0.99 -5.01 -3.22 -0.68 -0.47 0.35 0.32 0.04 0.64
-3.02 -3.38 1.22 1.93 0.83 0.25 0.63 -1.0 -0.31 -0.33 0.43 0.01 -2.06 -3.56 -3.3 -2.01
- - 1.41 2.2 0.63 -1.9 -0.7 -1.11 - - -0.01 -0.73 0.29 -0.73 -1.14 0.99
- - 1.92 2.57 0.22 1.04 0.09 -6.98 -5.36 -4.78 0.06 -0.22 - - -7.55 -
- -6.85 2.17 2.34 1.2 -0.1 -1.62 -6.14 - -5.66 0.34 0.53 - - -3.41 -
-0.75 -0.75 1.63 2.11 0.71 0.39 -0.2 -1.56 -0.9 -1.09 -0.31 -0.69 -1.85 -2.4 -3.48 -2.05
-2.53 -2.83 1.69 2.57 -0.11 -1.26 - -2.91 -3.07 -4.01 -0.86 0.95 -0.72 -1.08 -0.74 -0.52
- -5.27 2.03 2.45 0.77 0.05 0.31 -1.56 -0.76 -3.44 -0.82 -0.25 - -6.25 - -
-0.89 -0.86 1.16 1.7 0.94 0.06 -0.78 -1.08 -1.21 -1.17 0.41 -0.28 -0.65 -0.77 -1.44 -0.34
-6.1 -7.17 1.84 2.03 0.68 1.25 -1.0 -3.45 0.31 0.9 -1.92 -1.97 -4.91 -6.51 -6.49 -4.87
-0.46 -1.05 1.31 1.85 0.63 0.49 -0.13 -0.75 -0.43 -0.22 0.01 -0.8 -1.88 -2.15 -1.93 -1.76
-0.81 -1.15 1.2 1.14 0.64 -0.44 -1.12 0.4 -0.7 0.17 -0.57 0.1 -0.32 -1.53 -0.07 -0.3
-3.4 -1.31 2.06 2.38 0.32 0.39 -2.07 -0.45 -3.52 -3.46 -1.91 -1.82 -0.39 -2.16 -2.42 -0.51
-1.78 -2.13 1.86 2.42 0.36 1.17 -2.21 -2.51 -4.48 -2.89 0.18 0.29 -6.13 -5.23 - -6.26
- - 1.87 2.82 1.35 -2.77 - -10.03 - - -1.9 1.22 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.