Heatmap: Cluster_123 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - - - -0.3 - - -1.08 2.94 2.52 - - - 0.39 - -
-2.22 -0.85 -2.35 -1.81 -1.57 -1.65 -0.73 -0.85 2.58 2.33 -0.21 -0.34 -3.78 -4.08 -3.91 -3.24
-4.54 -3.02 -2.75 -1.91 -3.15 -3.3 -4.28 -2.68 3.11 2.51 -1.53 -3.57 -4.22 - -2.22 -
- -1.29 -2.43 - - - -3.1 -0.67 2.88 2.63 -0.72 -2.83 -1.52 - - -
-5.21 -3.13 -9.56 -9.23 -6.11 -3.22 -4.06 -3.77 3.21 2.62 -3.32 -3.88 -7.65 -7.74 - -
-1.59 -0.78 -3.19 -2.71 -2.35 -1.17 -2.37 -0.22 2.65 2.22 -0.56 -1.28 -1.65 -1.97 -2.83 -1.36
- -12.19 -10.63 -11.3 -8.5 -7.58 -5.34 -0.78 3.21 2.6 -4.69 -6.21 - - - -
-3.65 -3.29 -1.98 -1.24 -4.53 -2.18 -2.86 -1.01 2.69 2.18 0.34 0.78 -4.37 -4.58 -4.87 -2.67
-3.31 -3.01 -7.01 -5.14 -10.34 -8.18 -11.14 -10.8 1.73 1.12 -0.65 -3.53 1.7 1.21 0.56 1.32
-9.88 - -7.73 -7.72 - - -10.73 -1.37 3.35 2.43 - - - - - -
-0.87 -0.98 -0.87 -0.74 -0.49 -0.47 -0.39 -0.4 1.84 1.34 -0.04 0.19 -0.44 -0.66 -0.86 -0.53
-7.88 -5.38 - - - - - -1.12 3.12 2.49 - - -4.19 -1.04 -0.89 -3.31
-2.99 - - - - - - -1.7 3.15 2.27 - - - - 0.88 -
-5.86 - -2.62 -1.79 -3.82 -1.5 -0.33 -1.7 2.69 2.0 -0.06 -1.17 -0.04 -1.81 - -0.16
-0.42 -1.31 -2.21 -1.2 -0.85 -1.11 -2.78 -2.6 2.89 2.37 -2.28 -3.97 - - - -
-3.59 - - -4.52 -7.3 -5.15 -4.1 -0.62 3.07 2.69 -3.07 -2.97 - - - -
-2.07 -4.68 -2.83 -2.92 -2.16 -2.39 -0.6 -1.79 2.85 2.24 0.01 -2.28 -2.07 -2.64 -2.27 -1.56
-2.46 -1.29 -3.31 -2.27 -3.32 -2.13 -1.6 -1.74 2.01 1.43 0.02 -0.07 0.78 0.05 -0.91 1.11
- - - - - - - - 3.36 2.48 -3.76 -3.87 - - - -
- -4.64 - - - - -10.33 -5.19 3.13 2.84 -8.0 - - - - -
- - - - - - - - -1.93 -2.88 - - 2.19 1.68 -0.64 2.85
-1.94 - - - - - - -2.36 3.09 2.7 - - - - - -0.91
- - - - - - - - 3.18 2.71 -2.13 -2.74 - - - -
-0.59 -3.34 - - - - -4.47 -0.48 2.44 1.83 0.18 -1.24 1.11 -0.98 -0.91 -0.43
-0.54 -0.31 -1.35 -1.38 -1.2 -1.38 -0.59 0.56 2.31 1.74 -0.99 -0.72 -1.62 -1.52 -1.44 -1.59
- -3.12 -3.13 - - - -4.13 -0.55 3.14 2.64 - - - - - -
- - - - - - - - 3.4 2.45 - - - - - -
- - - - - -4.56 - - 1.8 1.28 - - 1.49 0.0 -0.63 2.49
-3.11 -3.88 -3.22 - - - - -3.09 3.17 2.44 - - -0.32 - - -1.44
-4.63 - - -2.99 - - - -4.04 3.0 2.68 0.4 -3.8 - - - -
- - -4.86 - - - - -5.94 2.89 2.85 0.28 -3.29 - - - -
- - - - - - - - 3.4 2.45 - - - - - -
-6.33 -11.06 -4.18 -2.53 -6.16 -4.81 -4.97 -0.76 3.12 2.51 -1.87 -1.21 - - - -6.75
-6.57 -2.93 -3.36 -3.81 -3.16 -1.57 -3.03 -1.02 2.94 2.64 -1.39 -2.06 -4.3 -6.27 - -5.3
-3.74 -1.66 -4.32 -4.09 -2.21 -3.04 -2.41 -3.48 2.88 2.35 -3.77 -4.61 -0.51 -1.47 -0.79 -0.67
-2.6 -3.41 -2.34 -2.06 -1.58 -0.98 -1.95 -0.26 2.57 2.33 -0.13 -0.11 -2.54 -2.85 -3.3 -2.49
-2.17 -1.24 -2.22 -2.97 -1.57 -1.29 -0.78 -1.44 2.91 2.15 -2.54 -4.07 -1.89 -2.37 -1.72 -1.46
-2.13 -2.81 -5.09 -4.34 -3.55 -2.0 - - 2.81 2.47 0.43 0.21 - -5.83 -2.68 -
-2.13 -1.68 - - -2.37 -1.76 -8.12 -0.56 3.06 2.58 - -6.85 - - - -
-7.62 -3.72 -5.53 -4.71 - -6.3 -4.43 -1.66 3.28 2.41 -1.8 -2.59 - -6.03 - -
-3.2 - - - - - - -3.68 3.25 2.55 -3.06 -4.16 - - -1.84 -
- -1.24 - - - - - - 3.33 2.46 - - - - - -
- -0.54 - - - - - -1.74 3.08 2.72 - - - - - -
- - - - -1.96 -2.11 0.41 -1.06 2.69 2.28 -1.38 -1.49 - - - 0.7
-6.0 -1.25 - -7.24 - -8.61 -5.15 -2.44 2.98 2.67 -0.6 -1.56 -5.65 -5.43 -4.09 -5.78
- - - - - - 0.25 -1.75 3.1 2.57 - - - - - -
-2.14 -1.94 -2.99 -4.92 -3.35 -2.29 -1.82 0.0 2.53 2.18 -0.13 -0.81 -1.85 -1.02 -1.22 -0.39
-2.28 -1.7 -2.35 -2.6 - -2.97 -6.19 -1.7 2.91 2.0 -1.06 -1.51 -0.8 -0.31 -1.04 -1.14
-3.74 -4.74 -8.35 -9.02 - -9.38 -10.02 -5.05 2.02 1.45 -0.16 -3.53 0.94 1.38 1.23 0.27
- -5.14 -3.02 -1.69 -2.89 -1.06 - -0.64 2.65 2.53 -0.36 -1.24 -2.69 -1.2 -1.72 -2.82
-3.24 -1.33 -2.92 -2.18 -5.28 -4.31 -7.18 -4.68 2.98 2.39 -0.94 0.41 -8.55 -7.18 -7.57 -4.67
-0.2 -1.8 -2.31 -2.82 -1.3 -1.43 -4.24 -0.69 2.76 2.15 0.03 -1.49 -4.54 -4.0 -2.59 -2.69
-1.26 -1.38 -1.94 -1.73 -1.23 -1.12 -0.28 -0.48 1.97 1.76 -1.52 -0.44 -0.04 -0.43 -0.88 0.64
- - - -3.39 - - - -2.21 3.13 2.71 -2.64 -4.74 - - -2.42 -
- - - -5.09 - - - -2.29 3.29 2.58 - -4.87 - - - -
- - -5.91 - - -5.95 - -1.43 3.05 2.53 -1.92 0.2 - - -3.03 -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.