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Heatmap: Cluster_219 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.51 -2.0 0.43 0.04 1.67 0.52 0.26 -2.39 -2.12 -1.12 -0.62 -0.17 0.1 1.12 0.19 -0.79
-7.44 -2.88 -0.65 0.6 2.55 1.15 -7.29 -3.56 -0.06 -0.07 0.38 0.06 -2.71 -4.22 0.07 -4.84
-4.78 -2.54 0.87 -1.2 3.03 0.18 1.82 -5.64 - - - - -2.08 - -2.1 -2.2
-1.67 -9.39 0.93 1.17 2.21 0.8 0.84 -0.34 -5.42 -5.17 -3.55 -0.87 -2.51 -1.02 0.08 -2.63
- - -0.46 -0.08 3.66 0.55 -4.0 -6.03 -4.13 -5.2 -4.45 -5.03 - - - -
- - 1.8 1.16 2.91 0.18 0.66 -9.73 - - - -3.91 - - - -
-2.29 -0.18 0.94 1.05 1.92 0.86 0.07 -0.51 -1.57 -1.37 -0.35 0.42 -2.73 -2.66 -2.0 -2.71
- - 1.47 0.84 2.51 0.76 0.85 -5.32 - - -2.86 1.04 - - -4.89 -
-2.85 -4.17 1.48 -0.13 2.61 1.2 1.06 -4.07 -2.82 -3.88 -1.15 -3.11 -3.47 -3.36 -1.57 -1.93
- - 1.25 0.12 3.35 0.61 -0.37 - - - - -4.03 - - - -
-7.83 -7.59 0.65 0.89 2.74 0.84 1.51 -4.15 -2.55 -3.73 -1.49 -1.07 - -6.16 -3.09 -7.51
-3.48 -1.67 1.43 0.68 2.73 0.21 0.23 -2.28 -1.26 -1.21 -1.91 -0.43 - -3.38 - -2.41
-3.89 -3.03 -1.3 -1.13 2.32 -1.11 -2.47 -4.39 -3.49 -4.01 -0.86 -0.89 2.6 -0.2 -0.23 -2.03
-0.25 -2.04 1.31 1.27 2.14 0.46 -0.97 -2.45 -1.77 -1.21 0.37 -0.32 -2.25 -3.04 -3.59 -1.6
-0.74 -0.63 1.52 0.42 2.81 0.13 -1.75 -3.35 -3.96 -4.16 -0.33 -0.2 -4.2 -3.13 -4.23 -4.74
-1.38 -1.77 1.02 1.0 2.57 0.97 -2.59 -3.17 -3.21 -2.15 -0.31 -0.41 -1.46 -3.56 -0.9 -2.0
- - -0.27 -0.03 2.82 1.24 1.12 -6.17 - - 0.51 0.23 - - - -
-3.25 -1.78 0.73 0.09 2.99 1.19 0.11 -7.38 -3.93 -3.57 0.24 -2.78 -3.96 -5.05 -5.3 -
-4.43 -0.45 0.38 1.29 2.36 0.17 1.37 -2.44 -4.9 -5.84 -4.8 -4.33 -1.23 -1.65 -0.99 0.08
- -4.63 -0.12 1.02 2.61 1.34 1.57 -3.11 -6.12 -4.48 -0.82 -1.23 - -4.29 -3.8 -3.31
- - 0.7 1.45 3.2 -1.84 -3.48 - - - -1.65 0.83 - - - -
-10.92 -6.42 -0.91 0.67 3.57 0.04 -0.14 -8.32 - - -5.22 -4.44 - - - -
-5.98 - 0.06 0.05 2.78 1.39 0.71 -0.26 - - -4.53 -0.93 -1.28 -1.05 -1.3 -3.4
- - 0.92 -0.17 3.22 0.67 0.89 -3.38 - - -5.93 -3.58 -3.36 -6.78 -3.71 -3.81
- - 0.7 0.18 2.65 1.48 -0.09 0.03 -3.97 -1.59 -0.71 0.24 - - - -
-0.05 -2.09 0.91 0.99 2.26 1.13 -2.31 -2.7 -1.5 -2.57 -1.63 -2.32 -0.76 -1.57 -0.98 0.18
-5.89 - 1.37 -0.02 2.55 0.72 1.06 - - - -1.63 -0.84 -3.19 -1.7 0.59 -
-2.49 - 1.15 1.52 2.6 -0.77 1.3 0.02 - -5.08 -4.05 -3.34 - -2.57 -2.23 -
-6.63 -1.72 0.78 0.91 2.31 1.09 0.62 0.03 -0.29 -2.27 -0.68 -0.48 -5.36 -5.23 - -5.48
- - 1.7 1.2 2.58 0.63 0.78 -6.51 - - -0.74 -0.72 - - - -
- - 0.81 1.33 3.19 0.59 -0.67 -3.24 - -2.76 -4.72 -2.83 - - - -
- - -0.35 1.39 3.22 1.3 -0.45 - - - - -4.07 - - - -
- -4.6 1.19 1.24 2.63 0.85 -0.2 -4.98 - - 0.33 0.14 - - -4.21 -
-3.71 - 1.27 0.59 2.73 1.32 0.12 -0.56 -4.85 -6.11 -3.72 -0.26 -4.23 -4.91 -3.84 -5.94
-3.39 -5.79 -1.86 -1.87 2.74 -0.46 -7.08 -6.62 -10.08 -7.7 -3.76 -3.15 1.35 -1.25 2.12 -1.33
-3.47 -0.49 0.05 -0.57 2.86 0.54 -1.9 -4.16 -2.58 -1.19 -0.44 0.05 -1.69 0.34 -1.34 -3.58
-6.84 -5.05 0.42 0.62 3.04 1.33 -0.94 -3.72 -2.69 -3.92 -0.29 -0.59 -5.98 -7.49 -8.0 -6.1
-4.5 -5.47 1.58 1.1 2.62 0.61 -6.34 -4.61 -0.47 -0.33 -2.57 -1.21 -3.87 -1.42 -1.11 -3.95
-4.17 -2.06 0.57 -0.5 2.89 0.81 -1.89 -4.27 - -4.27 0.76 0.74 -2.01 -3.11 - -2.14
-1.65 -3.18 1.2 0.86 2.23 0.99 -0.13 -0.96 -8.81 -4.43 -0.31 0.1 -1.68 -1.73 -1.96 -0.86
-0.45 -0.34 0.54 0.62 1.34 -0.07 -1.21 -1.33 -0.98 -0.69 -0.4 -0.54 0.35 -0.09 0.15 0.36
-4.86 -1.92 0.47 -0.83 2.52 1.66 1.24 -5.14 -4.49 -4.43 0.19 0.3 - - - -
- - -1.03 - 3.33 - - -2.72 - - - - - - 1.85 0.75
- - -0.53 0.59 3.73 -1.04 -5.81 -11.66 - - -5.39 -6.48 - - - -
- - -1.85 -0.23 3.83 -1.5 -2.72 -9.4 - - -3.49 -3.41 - - - -
- -1.14 -0.24 -0.54 3.5 -1.39 -2.06 - - - -1.97 -0.5 - - 0.17 -
-3.47 -5.87 1.84 0.58 2.73 0.56 -0.15 -4.62 -3.15 -5.23 -1.19 -0.26 -5.17 -3.65 -2.41 -3.81
-1.65 -4.34 0.83 0.59 2.19 0.87 0.9 -1.48 -3.26 -2.62 -0.42 0.28 -1.49 -1.76 -2.65 -0.46
- -4.87 -3.05 -2.23 3.58 0.55 - -5.42 -4.81 - -4.72 -2.01 - -2.7 0.76 -
-4.94 - 1.33 0.32 2.45 -0.32 -1.06 - - - - - 1.09 0.67 -0.26 -0.18
- -6.08 - -3.85 3.66 0.89 - -6.85 -0.47 -0.59 - - - - - -
- - 1.7 - 3.54 0.21 - - - - - - - - - -
-0.47 - 0.75 -0.92 2.58 -1.29 1.08 -2.91 - - - - - 2.15 - -
-2.2 - 0.18 -0.08 3.04 0.88 -2.08 - - - -0.74 - - - 1.48 -
- - -2.35 1.9 3.34 -2.86 - - - - 0.07 -0.32 - - - -
-1.75 0.1 0.43 0.96 2.07 0.53 1.56 -2.64 -2.18 -3.21 0.08 0.09 -4.5 -5.78 -5.17 -3.81
- -6.67 2.13 0.46 3.06 0.64 -2.73 -4.08 - - -4.79 -3.89 - - - -
- - 1.54 0.94 3.17 -0.08 -0.0 -6.51 - - - -2.28 - - - -
-6.8 -2.72 -1.64 -0.41 2.43 -0.15 - -6.43 -5.14 - -5.01 -3.55 -1.52 -0.29 2.63 -0.05
- - -0.74 1.12 3.29 0.54 0.54 -6.63 - - -2.82 -1.41 - - - -
-5.41 - -0.09 0.24 3.32 1.54 - - - - -2.36 -2.47 - - -0.73 -
-6.81 -7.23 1.05 0.63 2.81 1.7 0.96 -7.05 -5.17 -7.11 -5.49 -3.09 - - - -
-3.67 -4.7 -0.51 0.45 3.58 -0.23 -3.26 -3.2 -4.8 -4.16 -2.25 -5.81 -2.17 -3.59 -3.52 -3.61
- -6.99 1.47 -0.61 3.03 1.2 1.06 -6.76 - - -7.75 -6.85 - - - -
- - 0.71 -0.13 2.83 -0.37 1.95 -5.6 - - -3.24 0.11 - - -1.05 -
- - -0.86 0.22 3.56 -0.89 0.79 -2.2 - - - - - - - -
-3.7 - -0.26 0.81 3.54 -0.29 -0.35 -3.52 - - - - - - - -
- - -2.87 -4.67 3.97 -4.04 -7.0 - - - - - - - -4.44 -
-1.76 - 0.63 0.96 3.06 1.33 -1.63 - - - -1.29 - - - -0.66 -
0.01 -0.33 1.42 1.15 1.96 0.45 -0.44 -2.39 -3.72 -4.6 -1.09 -1.36 -0.71 -0.69 -1.48 -0.8
-3.8 0.87 0.13 1.31 3.17 -0.29 -2.68 -1.84 -4.13 -6.21 -4.15 -3.27 -5.28 -9.96 -7.89 -6.18
-2.35 - 0.94 1.17 2.66 1.64 0.86 -7.89 - -6.21 -1.93 -3.47 - - - -
-0.89 -2.05 -0.42 -1.09 0.81 -1.09 -0.42 -1.2 -1.98 -5.38 -2.17 -1.86 1.62 1.18 0.8 1.46
-4.25 -1.27 1.09 -0.13 1.95 -0.12 -1.98 0.22 -2.55 -2.22 -1.88 -1.45 -0.02 0.46 1.01 -0.18
- - 0.16 0.58 2.48 -0.26 1.37 -1.16 -0.13 0.93 -1.18 -0.74 - - -3.54 -
-3.77 -3.71 0.03 0.54 2.82 -0.07 -5.87 -6.18 -4.14 -5.13 -0.65 -0.07 0.25 -1.48 0.88 -1.98
-6.84 -4.58 0.31 0.53 1.8 0.48 1.05 -1.92 -4.5 - -2.6 -2.19 0.85 0.24 0.73 -0.03
- - -1.34 -0.26 3.67 -1.95 0.1 -1.91 - - - - - -1.12 - -
-5.87 -4.39 0.57 -1.22 2.91 1.55 1.67 -2.94 -4.54 -4.67 -4.55 -3.3 - -8.39 -6.32 -6.42
-3.29 -8.92 -0.08 -0.29 2.63 0.12 -2.66 -0.44 -1.91 -1.13 0.21 0.1 -1.19 -0.01 -0.34 -0.37
-2.05 -1.99 -0.22 0.27 2.44 -0.94 -2.7 -4.45 -4.43 -4.18 0.24 0.78 0.86 -0.38 0.26 -0.97
-9.95 -9.71 -1.87 -0.96 2.94 0.06 -9.84 - -6.27 -6.53 -1.48 -0.96 1.71 -0.15 0.41 -3.13
-6.43 - 0.07 1.32 3.04 1.44 0.49 -4.59 - - -4.98 -5.08 - - - -
-1.35 - 0.37 0.04 3.25 -1.62 -8.81 -6.53 - -8.48 -3.74 -0.36 -4.31 - 0.9 -0.67
-1.93 - 0.66 0.9 2.53 0.95 -0.1 0.42 - - - -4.79 0.04 -0.82 -2.45 -0.96
-4.16 - 1.4 -0.12 2.96 1.83 -0.78 -3.97 -7.81 - -3.13 -2.26 -5.46 -5.24 -5.49 -6.59
-3.72 -2.94 0.25 1.3 2.54 -0.05 1.82 -2.77 -3.7 -2.98 -1.68 -2.12 -1.55 -3.23 -1.92 -2.32
- - -0.25 1.59 2.94 -0.3 -1.88 -0.45 -2.39 -1.7 -0.17 0.36 - - - -
- - -0.15 1.75 3.0 0.74 0.77 -7.36 - - -2.81 -2.08 - - - -
- - 0.1 1.51 2.73 -0.29 1.9 -6.3 - - -1.62 -0.82 - - - -
-0.52 -0.59 0.77 0.46 1.67 0.83 -0.35 0.11 -0.55 -0.92 0.21 -0.04 -1.52 -1.64 -1.76 -1.14

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.