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Heatmap: Cluster_154 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-2.86 -7.62 1.19 0.65 0.91 -0.31 1.26 1.26 -2.64 -2.01 0.73 0.09 -2.24 -1.46 -2.33 -0.66
0.28 -1.55 0.96 0.95 -0.63 -0.03 0.78 -0.58 -0.19 -0.89 0.21 -0.57 0.0 -0.39 -0.8 -0.04
- - - - - - - - - - - - - - - -
0.38 -1.18 1.27 1.27 0.05 0.3 1.3 -0.45 -3.04 -2.07 0.84 0.78 -4.8 -5.9 - -4.51
- - 0.53 2.84 -0.98 - 2.25 -2.58 - -1.96 0.16 -1.22 - - - -2.84
-1.66 -2.08 1.11 1.58 -1.44 -1.19 1.92 -0.93 0.57 0.62 -0.16 0.31 - - - -5.99
-0.45 -0.6 0.01 0.35 -0.03 -0.35 0.83 0.93 0.19 0.53 -0.4 -0.56 -0.02 -0.6 -0.77 -0.69
-6.07 -2.51 1.3 1.26 -0.44 0.34 2.18 -2.14 -3.5 -4.22 -0.79 -1.32 0.03 -0.35 -1.8 -0.04
- - 1.58 1.3 -3.74 -2.24 2.37 -4.78 -5.79 - 1.9 0.4 - - - -
- - 0.36 1.28 -0.02 0.49 2.38 -5.62 -4.39 - 1.32 0.85 - -3.15 -2.08 -
-5.74 -2.96 1.85 1.49 0.03 -0.4 1.63 -0.1 -3.5 - 1.17 0.15 - -3.34 - -3.95
-9.78 - 1.76 1.98 -2.26 -1.67 1.91 -3.76 - - 1.38 0.77 - - - -
- - 0.59 2.29 -0.19 -0.04 2.12 0.27 -1.58 0.2 -0.71 -3.4 - - - -
- - -1.68 -3.76 -4.55 -2.44 -1.55 -4.53 - - - -5.12 2.09 -4.87 -2.8 3.4
- - 1.77 1.01 -1.44 -0.78 1.81 1.6 -1.62 -6.26 0.89 -0.16 - - - -
- - 1.01 0.85 - -2.57 1.62 -0.14 0.53 1.41 0.35 1.4 - - - -
- - - - - - 4.0 - - - - - - - - -
-0.84 -1.66 0.01 0.49 -0.68 -0.78 0.26 0.18 -0.04 -0.39 -0.89 -0.91 0.49 1.0 0.49 0.65
- - - - - - -0.42 - - - - - 3.16 2.65 - -
- - 1.18 0.95 -0.75 0.08 3.08 0.32 - - -2.79 -2.9 - -2.65 - -
- - 3.07 - 1.17 1.07 - - - - - 1.69 - - - -
-1.85 - -0.74 1.79 0.24 -0.77 1.02 - - - - 0.3 -0.15 - 2.41 -1.27
-2.98 -4.88 1.23 1.41 -1.2 -0.33 2.29 -1.92 -2.75 -3.09 -1.1 -2.49 -2.08 -2.14 1.49 -1.85
-1.99 -2.1 0.71 1.57 -0.31 0.12 1.96 -0.8 -1.08 -1.85 -0.91 -1.5 -0.41 -0.94 -1.27 0.29
- - 0.27 1.98 -0.07 -0.62 2.25 -2.55 - -3.27 1.28 0.24 - -3.09 -1.02 -
- - 2.52 -1.72 - - 2.55 2.03 - - - - - - - -
0.16 -0.23 0.22 0.23 0.11 -0.3 0.37 0.05 -0.59 -0.41 -0.28 -0.0 0.11 0.0 -0.37 0.46
-0.68 -1.56 1.11 0.37 1.32 -0.5 1.2 0.85 -0.38 -1.41 -0.27 -0.18 -0.61 -1.92 -2.85 -1.39
- - 1.21 1.79 0.98 1.0 2.51 -5.25 - - -1.7 -2.29 -5.27 - - -
-0.01 -0.83 0.61 0.44 0.22 -1.25 0.14 0.09 -0.24 -0.19 -0.99 -0.59 0.62 0.71 -0.43 -0.01
-0.63 0.22 0.53 0.51 0.06 -0.45 0.14 -0.13 0.18 -0.06 -0.01 0.11 -0.04 -0.43 -0.7 0.06
-2.59 -1.28 1.51 1.25 -0.26 -0.48 1.44 0.68 -1.01 -2.09 0.88 0.33 -3.28 -2.23 -2.53 -6.21
-1.98 -2.62 1.75 -0.54 -0.06 -0.79 1.83 2.03 -1.15 -7.1 -0.24 -0.28 -3.26 -4.58 -5.47 -4.04
-1.19 - 1.22 1.17 1.04 -0.33 1.81 -0.28 0.05 0.07 -0.48 -0.0 - - - -
-3.33 -3.35 0.21 1.02 -3.42 -6.07 0.79 0.45 0.25 -0.09 0.05 -1.22 1.46 -0.18 -1.33 0.83
-6.33 -2.11 0.97 1.32 -2.08 -2.05 1.22 1.01 0.17 1.53 0.94 -1.5 -3.76 -5.4 -5.66 -3.94
0.16 -0.51 0.75 1.06 0.93 -0.02 1.2 -0.99 -2.46 -1.98 -0.55 -1.06 -0.2 -0.25 -1.44 0.05
-3.58 - 1.71 1.44 0.42 -0.73 2.67 -5.97 - - -2.6 0.55 - - - -
-0.99 -1.0 -1.07 -1.3 -1.65 -1.13 0.12 -1.0 -0.61 -0.35 -0.21 -0.6 1.96 0.68 0.03 1.18
- - 0.16 1.92 0.43 -0.23 3.02 -4.11 - - -2.31 -0.83 - - - -
0.27 -2.06 0.3 0.98 -0.39 -0.8 1.06 0.42 -1.38 -1.77 -0.23 -1.23 -0.34 0.03 0.15 0.78
-3.66 -1.02 -2.52 -0.99 -2.0 -1.18 1.52 -4.28 -2.08 -5.6 -3.57 -5.67 1.67 1.41 0.13 1.94
- - 0.37 1.09 2.08 -0.37 2.88 -5.2 -7.6 - -3.16 -3.52 - - -5.86 -
- - 0.37 1.67 -2.41 -3.19 3.48 -4.46 - - -5.01 -7.12 - - - -
- - 1.88 1.21 - -0.16 1.91 -0.08 0.45 - 0.54 - - 0.69 - -
-0.2 -1.04 0.38 0.5 -0.02 -0.79 0.86 0.44 -0.6 -1.22 -0.22 -1.02 0.59 0.07 -0.66 0.64
-3.17 0.74 1.18 1.49 -0.08 -0.76 0.95 -0.28 1.03 -0.01 -0.7 -0.45 -2.84 -2.9 -4.04 -2.94
- - -1.53 - - - -1.21 - - - - - 3.06 -0.55 - 2.63
- - 0.4 2.63 2.14 -1.64 1.87 -4.66 - - - -4.31 - - - -5.04
- - - 1.13 - - 3.39 - - - - 1.73 - - - -
- - 1.72 0.06 - - 0.63 -1.37 - - - 0.3 - - - 3.09
- - - 2.95 1.26 1.12 1.47 -3.54 - - - -0.26 - - - -
- 0.67 - - 0.38 - 2.65 - - - - - - - - 2.77
- -2.77 - - - - -1.39 -4.45 - - - - 2.36 2.43 1.34 1.24
- - 0.08 2.15 2.0 -1.4 2.48 -4.88 - - -2.7 -1.56 - -6.76 - -
-4.27 0.32 0.8 1.5 1.01 0.15 0.96 0.08 -0.33 -0.1 -0.82 -0.88 -1.57 -3.08 -2.6 -0.89
- - 0.29 0.45 - - -0.03 -0.42 - - -0.41 -1.03 1.83 1.45 0.48 1.47
-3.1 - -0.12 0.22 - - 0.04 -0.77 -1.71 -2.65 -0.29 0.09 2.21 1.78 - 0.82
- - 0.76 2.67 0.5 0.18 1.83 -1.56 - - -0.8 -0.12 - - - -
-4.9 -2.97 0.88 1.07 - - 1.6 1.07 - -1.87 - - 1.2 0.45 -1.36 1.29
-1.86 -1.16 0.67 1.45 0.18 0.54 1.13 -0.24 0.16 -0.34 -0.73 -0.92 -0.74 -1.5 -0.46 -0.73
- - -0.31 0.22 - - -2.2 -0.01 0.06 -0.89 - -1.54 1.6 0.02 -0.23 2.58
- - 1.36 1.86 -2.66 -2.83 2.09 -6.44 - - 0.96 1.72 - - - -
- - - - - - 2.53 0.77 - 0.87 1.68 1.79 - - - -
-0.75 -2.21 1.67 1.35 -0.93 -0.78 1.41 -1.23 -1.78 -3.1 0.38 0.46 -0.49 -0.51 -2.93 -0.68
-4.24 - 1.12 2.02 0.43 -0.46 2.11 -0.74 - - -4.04 -1.68 0.27 -1.74 - -0.24
- - - - - - - -2.84 - - - - - 1.52 3.7 -
-3.51 0.39 1.6 1.27 - -4.65 2.77 -1.2 -4.02 - - - -0.4 -3.82 - -0.04
-2.79 -3.53 -0.14 0.25 -4.19 -4.6 0.56 -0.62 -0.71 -1.95 -2.61 -4.52 2.2 0.9 0.02 1.53
- - 0.33 0.68 - - - 0.97 0.95 - - - - - 3.21 -
- - - - - - 2.99 - - - 1.33 - - 2.48 - -
-1.1 -1.3 0.3 0.71 -0.93 -0.63 1.2 0.85 -0.53 -0.96 -0.59 -0.54 0.22 0.11 -0.28 0.44
- - 0.85 0.86 1.79 -0.74 2.74 -3.05 - - -0.72 -0.09 - - - -
- - 0.55 1.02 - 0.56 3.11 -4.08 - -0.38 - -1.83 - - 0.34 -
- -0.44 1.91 2.16 0.87 0.18 1.12 0.49 -4.61 -3.55 -2.19 -2.62 - - - -
-0.43 -1.03 -0.98 -1.37 -0.19 -1.32 0.34 -2.42 -1.68 -1.63 -2.59 -1.11 1.77 -0.18 -0.43 2.28
-2.95 -2.85 0.36 1.16 -2.8 -3.3 1.12 0.22 0.09 0.19 0.02 -0.78 0.62 0.09 -0.93 0.76
-4.9 -6.4 1.26 0.6 1.78 -0.68 0.57 0.7 -1.22 -1.19 -0.63 -0.63 0.2 -0.43 -3.52 -0.45
-0.3 -3.4 0.76 0.98 -0.53 -1.3 0.53 0.53 0.81 -0.61 0.6 0.49 -0.8 -2.25 -3.05 0.28
-0.37 -1.17 0.22 0.03 -0.91 -1.66 0.47 0.3 -3.32 -2.77 -0.46 0.02 1.06 0.34 -0.15 1.53
- - 4.0 - - - - - - - - - - - - -
- - 2.39 2.17 -1.93 - 2.51 -1.9 - - - - - - - -
- -4.61 1.19 2.36 0.93 1.12 1.81 -3.17 -5.13 -3.07 -1.75 -1.59 - -5.87 -3.8 -
-3.71 - 1.17 0.6 0.67 -0.49 2.12 -1.52 -0.33 -0.7 -0.01 0.24 - -1.25 -0.15 -1.9
0.35 - 1.48 1.09 0.91 0.3 1.6 -2.08 -0.87 -1.29 -0.93 -2.71 0.69 -2.44 - -
- -5.09 0.03 2.21 -5.05 -6.22 2.93 -4.18 - - 0.95 -0.73 - -4.36 - -
0.12 -3.55 0.36 1.09 1.1 -1.37 1.26 -1.72 -1.37 -0.02 0.63 -0.19 -0.78 -1.59 -1.29 0.08
- - 1.54 0.96 -2.34 1.26 2.25 0.74 -4.7 - -0.15 -0.01 - - -2.39 -
-6.64 0.26 0.78 1.09 -0.41 -1.13 1.35 1.16 0.76 0.51 -0.17 -0.35 -4.08 -5.37 -6.1 -3.88
0.51 -0.55 0.78 0.71 0.2 -0.42 0.66 0.17 -0.77 -0.61 -0.7 -0.39 -0.15 -0.43 -1.9 0.49
-2.42 - 2.46 - - - 2.23 -1.96 - - - - - -0.81 2.26 -
-0.46 - 1.07 0.9 0.76 -1.13 2.63 -1.77 -1.98 -2.92 -0.43 0.26 - -3.0 - -2.24
- - - - - - - - - - - - - - - -
- - 0.82 - - 0.8 3.61 -1.85 - - - - - - - -
- -7.84 0.46 1.25 -0.87 -0.94 1.97 1.56 0.03 0.79 -1.32 -0.02 -4.26 -3.52 - -5.53
-1.83 -2.72 0.6 0.97 0.3 -0.6 1.33 0.05 -0.84 -1.36 -0.23 -1.07 0.55 0.38 -0.74 -0.01

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.