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Heatmap: Cluster_6 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
- - -0.22 1.12 -1.67 1.33 0.11 -1.28 1.09 -0.17 0.45 - - - 2.09 -
0.26 -1.62 -0.25 -0.15 1.08 0.3 0.69 -0.79 -0.54 -0.51 0.57 0.6 -0.5 -0.8 -0.45 -0.34
-0.08 -1.85 - - 1.21 1.32 - -0.74 -0.64 0.41 0.45 -0.66 1.67 -0.42 - 0.55
-0.56 2.0 - - 2.01 2.87 - - - - - - - - - -
-0.09 -1.06 -0.43 -0.76 0.53 0.65 -0.53 0.31 0.77 -0.63 0.42 -0.8 0.54 -0.01 -0.83 0.05
-0.9 1.29 - - 1.09 2.1 -4.47 - -0.22 1.0 -1.13 -3.23 - 0.02 1.09 -
2.3 -3.96 -1.37 -1.31 1.44 -1.02 0.31 0.22 -3.35 -5.46 0.91 0.59 -1.1 -2.11 -3.21 -1.85
0.62 -1.31 -0.94 -0.05 0.04 0.47 -1.2 -0.65 0.36 -0.24 1.18 - - - - 2.23
0.15 0.06 -0.31 0.02 0.42 0.32 -0.11 -0.68 0.08 -0.3 0.71 0.05 0.03 -0.26 -1.61 0.21
- - - - - 2.67 - - - - - - - - 3.27 -
-0.02 -0.53 -0.17 -0.19 0.14 0.55 0.39 -0.13 0.35 -0.39 0.4 -0.07 -0.11 -0.42 -0.94 0.32
-2.69 -0.46 0.21 0.14 0.92 2.1 -0.46 0.7 0.41 -0.12 - - 0.12 - - -0.01
-2.15 -6.31 -0.37 0.06 0.8 0.58 0.2 -2.56 1.41 0.39 0.75 0.91 -1.02 -1.36 -1.01 -1.07
-1.03 -1.96 -2.5 -0.89 -0.86 -0.76 -1.4 -1.19 -1.15 -0.87 -0.64 -1.42 2.25 1.09 -0.84 1.65
-0.1 -1.11 -0.78 -1.12 -0.58 -0.36 -0.42 -0.22 -0.7 -0.07 -0.07 -0.39 1.0 0.8 0.56 1.01
-0.15 -0.54 -0.63 -0.85 0.02 0.62 0.27 0.12 0.08 -0.75 -0.6 -1.62 0.72 0.26 0.38 0.65
2.76 - - - 2.36 - - - - - - - - 2.04 - -
-0.08 - - - - -1.2 - -0.69 - - - - - 2.63 1.7 2.19
0.33 -0.41 -0.84 -0.79 0.48 -0.04 0.33 0.27 0.45 0.54 0.99 -0.17 -0.39 -1.08 -2.25 -0.21
-0.76 -0.68 -0.57 -0.13 1.36 0.6 1.66 0.68 -4.16 -4.78 0.65 1.27 -3.23 -4.91 -3.25 -4.35
0.31 -0.59 -0.57 -0.22 0.35 0.61 0.46 -0.02 -0.28 -0.02 0.28 -0.46 -0.01 -0.58 -0.48 0.34
1.13 -2.39 -3.92 -2.14 0.38 -1.76 -0.87 -0.38 -3.35 - -0.48 -0.08 0.97 -0.73 0.07 2.33
-1.87 -3.05 -0.67 -0.59 -0.17 0.62 -1.1 -0.45 0.94 0.02 -1.26 -2.83 0.85 0.24 1.47 0.53
-0.09 0.27 -3.45 - 2.27 1.24 - - -1.24 -1.77 2.05 0.63 - -2.65 - -
-2.14 -1.59 0.12 0.28 1.4 0.74 -0.1 -0.91 1.2 0.62 0.48 -0.72 -1.93 -1.37 -1.17 -1.2
0.4 -0.04 -0.02 0.23 1.01 0.32 0.34 -0.62 -0.73 -0.73 -0.09 0.36 -0.3 -0.75 -0.59 -0.21
0.51 - -2.61 -0.95 -1.49 0.06 -3.28 -1.77 -1.01 -2.95 -0.59 -0.7 0.62 1.1 2.27 0.76
-0.12 -0.84 -0.43 -1.28 -0.22 0.37 -0.63 -1.35 -0.2 0.02 0.42 -0.55 1.25 0.39 0.16 0.56
0.06 0.54 -0.35 -0.55 0.52 0.87 -0.9 -1.69 -1.24 -0.92 1.02 -0.16 0.42 -0.27 -0.65 0.33
- - 2.05 - - 2.02 2.96 - - - - - - - - -
0.43 - -0.16 -0.81 0.27 2.07 0.58 1.47 0.05 -1.3 0.44 -0.55 - - - -
-1.67 -2.22 -0.11 -0.49 0.57 0.62 -0.6 -0.73 0.59 -0.14 0.5 -0.78 0.78 -0.16 0.12 0.53
-0.75 -2.12 -0.41 -1.26 1.23 0.86 -0.5 -0.7 0.21 0.22 1.11 -0.72 0.58 -1.8 -0.54 -0.05
-3.14 0.04 -3.93 -1.6 0.78 1.32 -4.6 -2.62 2.0 -0.3 1.49 -0.2 -2.02 -3.12 -0.04 -2.14
0.19 -1.14 -1.39 -1.3 0.55 0.45 -0.66 -0.9 0.04 0.06 0.58 -0.76 0.67 -0.19 -1.12 1.34
-0.63 -1.51 -0.02 -0.58 0.31 0.83 -0.7 -3.81 0.45 0.24 0.66 -1.57 1.18 -0.88 0.16 0.33
0.02 -1.46 -1.32 -1.75 -0.4 -0.01 -0.28 -0.67 -0.63 -1.45 0.01 -0.36 1.18 0.92 -0.09 1.5
0.06 -0.11 - - -0.15 0.93 - -0.21 -0.35 -1.88 0.16 -1.36 1.0 1.22 0.39 1.11
0.36 -0.72 -0.18 0.05 1.27 0.43 0.24 -0.69 -0.42 -0.59 0.79 0.7 -1.32 -1.74 -0.68 -0.86
-2.68 -2.73 0.07 0.13 0.38 0.83 -0.53 -0.65 1.18 0.39 0.59 -0.98 0.58 -0.94 -1.17 0.1
- - - - - - - - - - - 4.0 - - - -
0.11 -0.96 -0.01 -0.04 0.11 0.05 0.09 -0.38 0.24 0.09 0.29 0.39 0.13 -0.03 -0.32 -0.26
0.44 -1.15 -0.64 -1.24 -0.38 -0.07 -1.04 -0.3 -0.5 -0.54 0.42 0.0 0.79 0.7 0.09 0.96
-0.06 -3.04 -1.26 -0.42 0.38 -0.3 -1.28 -2.56 -0.69 -0.85 0.18 -0.92 1.3 -0.08 0.4 1.81
- -2.71 -0.19 -0.86 0.27 2.0 -2.86 -1.67 - - - - - - 2.7 1.19
-0.54 - - - -1.72 -2.82 - - - - - - 2.39 0.78 1.63 2.27
0.19 -1.36 -0.89 -1.14 0.33 0.7 0.21 -1.2 -0.51 -0.99 0.61 -0.73 0.57 0.38 -0.46 1.11
2.29 - 1.52 0.6 1.84 -0.76 0.63 -2.76 - - -0.21 - - - - -
-2.24 -0.69 0.27 1.09 0.41 -0.67 0.22 -0.65 -1.49 0.38 1.02 0.01 -0.13 -0.65 -1.74 0.62
0.07 -3.43 -0.36 -0.88 0.13 0.53 0.44 -0.21 -0.27 -0.51 -0.0 -1.26 1.25 0.46 -0.79 0.58
-2.94 -3.55 -0.92 -0.73 -0.1 0.2 -3.12 -2.78 0.35 0.13 -1.25 -2.41 0.04 -0.96 2.77 -0.03
-3.34 -1.77 0.71 0.34 0.57 -0.77 -0.14 -2.68 0.3 0.36 1.13 -0.3 0.34 -0.65 0.88 -1.68
-2.84 0.14 -1.53 - 1.24 1.09 -3.33 -0.87 - - -0.28 -0.4 1.35 -1.74 1.33 1.23
0.32 -0.85 -2.33 -3.99 -0.62 -0.55 -1.2 -2.3 -2.15 -3.68 -1.64 -2.17 1.58 0.73 1.14 2.1

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.