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Heatmap: Cluster_32 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.29 - -2.66 -1.57 -3.98 -1.49 -1.56 -0.73 - - -3.53 -3.34 1.62 1.42 1.29 2.18
2.27 -0.67 0.16 1.19 1.0 0.27 -0.12 -0.88 -1.0 -1.63 -1.76 -3.28 -2.92 -1.43 -1.21 -1.63
-0.08 -7.2 -1.58 -2.73 -3.19 -2.35 -3.46 -2.4 - - -8.01 -4.95 1.8 1.83 1.53 2.01
1.04 -0.98 -0.94 -0.27 -1.11 -0.39 -0.26 -0.41 -3.52 -3.31 -1.45 -1.75 1.43 1.11 0.42 1.15
0.59 -2.51 -0.69 -0.58 -1.1 -0.66 -0.26 -0.53 -5.73 -5.03 -2.44 -2.37 1.47 1.16 0.78 1.7
2.96 - 0.82 - -0.06 1.38 - - 0.42 - - - - 0.63 - -
2.44 -0.05 1.14 0.56 -0.54 -0.92 -0.63 -1.5 -0.83 -2.84 0.08 -0.98 -0.56 -1.98 -2.91 -1.42
1.19 -1.4 -2.17 -0.82 -1.73 -0.5 -6.16 -7.4 -4.93 -5.45 - -6.52 1.2 1.61 1.96 1.14
1.94 -1.1 -0.88 -0.63 -1.12 -0.26 -1.14 -1.69 -0.46 -1.98 -1.02 -0.98 0.59 1.04 0.83 0.19
2.04 -0.79 -0.76 0.8 0.35 -0.38 -0.73 -3.49 -1.8 - - - 1.61 0.56 0.52 -
2.68 - -0.51 1.17 -2.88 -2.16 -1.03 -1.67 -6.61 - -0.59 -0.18 0.54 0.7 -0.7 -2.07
3.07 -0.91 -2.92 -2.59 1.38 -0.37 - - - - - - - -1.1 1.55 -
0.74 -1.79 -3.01 -2.07 -1.19 -1.93 -2.93 -1.65 -1.68 -1.81 -2.13 -3.23 2.01 1.69 0.22 1.66
3.54 - 2.13 - - - - - - - - - - - - -
1.66 -1.05 -0.62 0.51 -0.24 0.42 -0.67 -0.37 -0.02 -0.37 0.04 -1.21 -0.32 -0.22 -0.32 0.01
0.93 0.02 -0.1 0.28 -0.56 -0.36 -0.13 -0.54 -0.36 -0.38 -0.56 -0.85 0.41 0.21 0.15 0.58
0.99 -0.82 -2.19 -1.86 0.03 -0.17 -1.54 -2.34 -2.04 -2.83 -3.53 -3.22 1.22 1.25 0.81 1.79
1.66 0.61 -1.0 -1.02 -2.49 -1.2 -2.98 0.04 -2.64 -3.0 -2.09 -5.65 1.23 -0.18 1.96 -0.17
1.8 -0.07 -0.94 -1.88 -0.35 -0.35 -0.64 -1.16 -1.79 -2.63 -0.7 -1.26 0.98 0.32 -0.09 1.31
3.24 -4.45 0.27 0.13 0.14 0.46 -1.57 -2.46 - -2.26 -1.23 - -1.99 -3.08 - -2.09
2.4 -2.58 -0.81 -0.31 0.01 0.29 -3.56 - -0.47 -2.08 -1.92 -1.36 -1.31 0.62 1.62 -2.11
1.21 -2.32 -0.75 -1.84 -0.7 -0.59 -1.48 -0.37 -3.52 -4.32 -3.05 -1.85 1.17 1.3 1.49 1.1
2.34 0.07 0.0 0.45 0.41 -0.42 -0.28 -0.58 -0.62 -0.89 -0.59 -1.07 -1.46 -1.65 -1.81 -0.62
1.95 -2.31 0.17 0.28 -0.1 -0.31 -0.95 -1.04 -5.93 -6.6 -1.94 -1.35 0.64 0.42 0.63 0.78
2.21 -1.22 0.01 0.64 0.48 -0.13 -0.79 -1.26 -5.17 -4.74 -0.06 -0.67 -0.3 -0.02 -1.21 0.26
1.78 -0.94 -0.17 -1.21 -0.4 -0.91 -1.19 -0.45 -5.05 - -4.73 -2.39 1.07 0.64 0.74 1.43
1.47 -0.53 0.01 0.54 -0.3 0.25 0.2 -0.88 -0.75 -0.9 0.69 0.34 -0.69 -1.01 -0.92 -0.45
0.92 -0.84 -0.52 -0.18 -0.1 -0.98 -0.51 -0.25 -1.82 -2.91 -0.53 -1.5 1.06 0.87 0.2 1.31
2.88 -1.98 0.51 0.84 0.85 1.2 -0.88 -2.29 - - -4.69 -2.48 -4.85 -6.14 -6.87 -4.97
1.33 -0.6 -0.98 -1.01 -1.85 -0.33 -2.82 -1.38 -1.18 -0.71 -2.31 -2.26 1.09 1.42 0.65 1.26
2.19 -0.61 0.31 0.73 0.4 0.5 -0.5 -0.29 -6.98 -6.41 -0.61 0.09 -1.05 -0.99 -1.26 -1.04
1.35 -0.55 -0.66 -0.31 -0.26 0.09 -0.66 0.8 -6.23 -6.58 -2.35 -1.21 1.07 0.72 -0.25 0.86
1.6 -2.27 -0.67 -1.77 -0.77 -1.85 -2.9 -2.89 -7.69 -4.63 -1.45 -2.24 1.37 0.9 1.31 1.66
3.59 - 0.8 1.13 - - - - - - - - - - - -
2.5 -3.25 -0.64 -0.53 1.04 0.59 -0.53 -0.31 -0.47 -0.49 -1.42 -2.19 -0.93 -0.94 -3.26 -0.59
1.88 -1.24 -0.16 -0.57 -1.64 -1.97 -1.16 -0.99 -1.64 -3.97 -1.7 -2.45 1.07 1.47 0.41 0.78
1.21 -0.27 -0.23 0.31 -0.97 -0.63 -0.86 -0.07 -3.13 -3.86 -1.41 -1.48 1.28 0.52 0.25 1.09
0.55 -5.55 -1.75 -3.81 -2.06 -1.95 -2.91 -3.49 - -6.06 -4.02 -4.54 1.8 1.8 2.23 0.72
1.16 -0.13 0.35 0.39 0.05 -0.11 0.55 -0.76 -0.32 -0.45 0.38 0.59 -1.06 -1.1 -1.14 -0.95
1.45 0.27 -0.38 -0.15 0.34 -0.09 -0.96 -0.81 -0.13 -1.09 -0.05 -0.14 0.3 -0.38 -0.14 -0.1
1.99 -3.52 0.77 0.83 0.77 0.69 0.63 -0.88 -4.93 -4.48 -0.4 0.54 -2.06 -1.4 -4.47 -3.16
0.05 -1.6 -1.14 -1.11 -1.38 -0.86 -1.25 -0.43 -3.81 -4.99 -1.75 -1.92 1.76 1.28 1.05 1.62
2.22 -3.95 0.8 0.86 0.04 -0.15 0.06 -0.64 -4.02 -5.55 -1.12 -0.49 0.18 -0.24 -3.3 -0.4
3.23 -5.52 1.11 1.4 -4.82 0.14 -1.82 -4.15 - -4.32 - -4.39 - - -2.07 -
1.83 -1.09 -1.05 -0.82 0.51 -0.15 -1.57 -1.35 0.1 -0.45 -1.1 -1.06 0.38 -1.11 0.07 1.19
1.07 -0.6 0.29 0.17 -0.02 0.04 -0.17 -0.25 -0.7 -0.3 -0.06 0.11 0.26 -0.3 -1.3 0.34
1.81 -3.27 -0.32 0.03 0.59 0.01 -1.02 -0.79 -2.76 -2.62 -1.26 -1.73 0.9 0.8 0.17 0.3
0.19 -2.01 -2.1 -2.82 -2.08 -1.57 -1.9 -1.39 -4.21 -3.17 -1.97 -2.81 1.81 1.57 1.19 1.88
0.84 -1.32 -1.05 -1.4 -1.73 -0.99 -2.83 -2.06 -2.93 -3.31 -3.13 -3.57 0.51 1.88 1.88 1.34
2.29 -0.64 -0.23 -0.08 -0.19 0.21 -1.74 -1.72 -3.73 -4.67 -1.31 -2.74 0.4 0.74 -0.44 0.71
2.84 -0.15 0.79 1.1 -0.1 -0.12 -4.22 -2.78 -2.77 -2.92 -4.26 -3.88 -1.76 -1.19 -2.78 -0.42
2.24 1.53 -1.19 0.73 -0.46 0.41 -0.5 -2.07 - - -4.97 -3.07 0.17 -0.62 -1.44 -0.0
2.89 1.17 -0.35 0.62 -0.31 1.26 -4.36 -4.47 -3.71 -5.65 -4.62 -2.91 - -2.46 -2.39 -3.49
1.42 -1.79 - -0.0 -0.53 -0.31 - -1.69 -1.24 -3.23 - - 1.92 -0.05 1.04 1.54
2.59 0.25 -1.5 -1.1 -0.32 0.41 -2.44 -2.66 -0.22 -0.09 -4.44 -3.4 -0.28 -1.41 -0.46 0.73
2.87 -0.86 -1.45 -3.92 -0.8 -0.59 -2.92 -2.73 -1.69 - -1.27 -1.7 -0.75 -0.43 0.96 0.92
0.86 -0.4 -0.11 0.23 -0.23 -0.33 -0.08 -0.22 -0.13 -0.6 -0.28 -0.27 0.49 -0.2 -0.18 0.57
3.14 0.45 0.27 0.09 0.4 0.24 -0.2 -3.9 - - - -3.48 - - - -
1.32 -1.91 -0.32 -0.12 0.07 -0.81 0.31 -1.26 - - -2.04 -1.21 0.9 0.99 0.9 0.89
2.44 -1.84 0.43 0.76 -1.1 1.25 -0.57 -4.12 -1.7 -3.04 0.64 -0.57 -2.07 -1.91 -1.61 -2.48
3.47 -0.25 0.42 1.31 - - - -4.59 -3.26 - - -3.28 - - - -
2.3 -2.71 1.0 0.52 -0.47 -0.63 -1.16 1.51 -2.13 -2.13 -0.8 -1.2 -1.49 -1.38 -3.06 -0.95
4.0 - - - - - - - - - - - - - - -
1.42 -0.02 -0.52 -0.26 -0.03 -0.21 -0.25 -0.81 -0.25 -0.19 -0.33 -0.56 0.33 -0.25 -0.51 0.65
0.68 -1.99 -0.88 -0.75 -1.03 -0.71 -1.29 -0.3 -4.62 -6.48 -1.16 -1.92 1.54 1.08 0.43 1.83
3.17 -6.99 -0.69 1.24 0.63 0.47 -2.08 -6.75 -6.91 - -3.25 -4.51 -1.51 -2.99 -7.17 -2.46
3.15 - 0.48 1.3 -0.78 0.58 - - - - - - - -1.42 -0.35 -
3.29 -0.66 0.24 0.45 -0.63 0.14 -3.14 -4.41 -1.59 -2.16 -2.4 -2.89 -4.39 -3.72 -5.73 -3.25
0.93 -1.28 -0.85 -1.2 -0.78 -0.48 -0.79 -0.68 -4.78 -3.1 -1.35 -2.01 1.5 0.93 0.28 1.79
4.0 - - - - - - - - - - - - - - -
1.78 -1.74 -0.94 -1.87 -4.39 -0.97 -2.61 -0.93 -3.95 -2.89 - -2.96 1.48 1.5 -0.05 1.73
1.3 -1.63 -5.08 -3.17 -1.95 -0.66 -2.75 -0.94 - - - -3.52 1.42 1.57 1.51 1.57
0.82 -0.28 -1.1 -0.5 -0.57 -0.62 -0.79 -1.64 -1.07 -0.6 -1.41 -2.67 1.1 1.34 1.1 0.61
0.95 -0.97 -0.66 -1.37 -0.44 -0.94 -1.23 -0.82 -2.14 -2.73 -1.42 -0.93 1.28 1.49 0.7 1.1
1.28 -0.47 -0.63 0.11 0.15 0.04 0.33 -0.22 -1.33 -1.72 -0.13 -0.84 0.42 -0.18 0.03 0.52
3.27 -1.19 -2.16 0.52 1.38 0.22 -2.72 -7.13 -6.23 - - - -4.89 -3.4 -2.91 -5.01
1.73 -0.77 0.44 0.47 -0.34 -0.39 -0.76 -0.89 -1.57 -2.61 -1.86 -1.65 0.48 0.53 0.35 0.56
2.53 -0.34 0.63 - -1.24 -1.4 -1.04 0.68 - - -0.7 - 2.13 - - -
-0.17 -3.73 -2.59 -3.63 -2.48 -1.97 -2.89 -2.28 - - -6.45 -3.9 1.74 2.1 1.8 1.5

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.