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Heatmap: Cluster_237 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.3 0.76 -1.21 -1.41 -0.68 -0.45 -0.35 0.04 0.39 1.05 -0.71 -0.62 0.16 0.03 0.01 0.4
0.07 0.47 -0.77 -0.37 -0.32 -0.96 -0.52 -1.15 1.02 1.52 0.37 0.73 -0.96 -1.56 -1.61 -0.48
-0.32 0.06 - - - -5.49 -2.32 -1.1 0.02 1.06 -0.5 -1.99 1.6 1.49 -0.11 1.4
-2.07 -1.67 -1.19 -3.77 -3.97 -2.33 0.2 -0.44 1.09 0.92 0.2 -0.19 0.84 0.0 0.68 1.23
0.18 0.67 -1.71 -1.23 -0.97 -1.22 -0.44 -0.56 0.93 0.86 0.14 0.15 0.09 -0.25 -0.21 0.56
0.13 0.14 -2.64 -1.95 -2.68 -1.58 -1.09 -1.17 0.44 1.31 -0.32 -0.64 0.89 0.94 -0.17 1.03
0.23 1.0 -0.76 -0.16 -0.99 -0.23 -0.29 -0.03 1.13 1.06 0.44 0.3 -1.9 -1.71 -1.88 -1.01
0.1 0.36 -1.4 -1.24 -0.87 -0.5 0.24 -0.04 0.56 0.79 -0.19 -0.28 0.43 -0.13 -0.07 0.41
0.33 0.71 -1.79 -1.63 -1.36 -0.89 -0.37 -0.42 0.7 1.24 -0.04 -0.66 0.19 0.31 0.1 -0.01
-0.56 0.8 -2.11 -2.02 -1.25 -1.45 0.26 -0.29 1.01 1.34 0.47 -0.02 -0.16 -0.13 -1.16 0.17
0.25 0.26 -1.23 -1.4 -0.56 -0.69 -0.2 0.31 0.93 1.35 0.13 -0.21 -0.61 -0.64 -0.8 0.17
-1.32 -1.77 -1.25 -0.94 -1.82 -3.07 -0.21 -0.35 1.34 0.92 0.45 0.0 0.56 -0.22 0.23 1.0
0.19 0.59 -1.21 -0.74 -0.4 -0.93 -0.18 -0.37 0.97 0.79 0.06 -0.09 0.15 0.17 -0.95 -0.07
0.79 0.87 -2.42 -1.58 -1.53 -0.54 0.36 -0.34 1.29 1.23 0.82 0.51 -2.1 -2.74 -2.94 -1.65
0.53 0.04 -0.85 -1.19 -0.65 -0.18 -0.45 -1.23 0.37 0.73 -0.37 -0.33 0.57 0.24 0.29 0.54
-0.39 0.21 -0.17 -1.05 -0.95 -0.43 0.66 0.06 1.07 1.27 0.45 0.38 -1.46 -1.49 -1.55 -0.81
0.32 0.88 -2.32 -1.58 -2.04 -0.44 -0.02 -0.0 1.19 1.05 0.69 -0.28 -0.49 -0.4 -1.42 -0.36
-3.9 0.78 -2.23 -1.9 -1.41 -1.39 0.74 -0.86 1.79 2.3 0.19 -0.42 - -4.11 -2.04 -2.14
1.31 1.56 -4.44 -3.43 -3.31 -2.19 -2.86 0.07 1.27 1.65 -0.84 -2.13 -0.19 -0.58 -3.14 -0.1
0.77 1.04 -0.91 -2.16 -1.08 -0.77 -0.7 -0.22 0.66 0.91 0.02 -0.22 -0.53 -0.27 -0.39 0.41
0.83 0.22 -1.25 -1.18 -1.98 -1.38 -0.54 -1.19 0.93 1.48 -0.62 -0.56 -0.09 -0.31 -0.1 0.79
0.19 0.65 -1.72 -2.3 -1.91 -1.23 -0.5 0.14 1.5 1.75 0.28 0.09 -1.2 -1.59 -0.76 -1.11
0.06 0.98 -2.85 -2.73 -2.08 -3.29 -0.49 -0.47 1.17 1.69 -1.39 -1.13 0.18 0.51 0.04 0.04
-0.08 0.91 -2.1 -1.55 -0.91 -0.23 -0.43 -0.1 0.89 1.62 0.43 0.6 -1.06 -1.67 -1.28 -0.87
0.26 0.49 -2.02 -2.36 -1.62 -1.44 0.07 0.7 1.16 1.61 0.07 -0.18 -0.65 -1.09 -1.49 -0.14
0.19 0.64 -3.03 -4.53 -1.92 -1.99 -0.72 -0.11 0.5 1.54 -1.36 -1.18 0.68 0.06 0.21 1.09
0.69 0.55 -0.9 -1.07 -0.89 -1.33 0.13 -0.83 0.6 1.12 -0.18 -0.5 -0.64 0.08 0.49 -0.11
-2.04 0.56 - - - - -2.82 -0.19 0.74 1.67 0.98 -1.13 0.18 0.08 1.32 0.38
-0.22 0.77 -2.11 -1.48 -1.59 -0.42 -0.41 -0.6 1.37 1.71 1.0 0.79 -2.24 -2.47 -3.16 -1.91
-0.29 0.25 -3.53 -3.25 -3.03 -2.65 0.07 -0.55 0.63 0.39 -0.29 -0.64 0.93 0.87 0.64 1.11
0.62 0.59 -2.8 -2.38 -1.72 -1.22 -0.62 -0.2 1.29 1.4 0.78 0.58 -1.11 -1.03 -1.1 -0.58
-0.13 0.73 -1.32 -0.56 -1.68 -1.57 -0.31 -0.16 1.01 1.71 0.72 0.97 -1.66 -2.3 -2.26 -1.36
0.53 0.56 -1.55 -1.57 -1.42 -0.74 0.19 -0.66 0.84 1.05 0.4 0.02 -0.35 -0.19 -0.38 0.06
-0.28 0.49 -1.47 -1.17 -1.02 -1.06 0.37 -0.23 0.91 1.51 0.39 0.29 -0.66 -0.96 -1.0 -0.07
0.61 0.63 -1.0 -1.54 -0.92 -0.57 0.04 -0.23 0.33 0.74 0.3 -0.41 0.17 -0.29 -0.02 0.2
-1.29 0.31 -2.97 -1.87 -2.12 -1.35 -1.27 -0.2 0.8 1.67 0.35 0.15 0.25 0.08 -0.34 0.76
-1.78 -2.5 -4.34 -6.58 -6.8 -3.04 -4.14 -4.07 -2.08 -1.02 -6.23 -6.34 1.05 2.76 1.91 0.91
-0.37 0.13 -3.65 -2.94 -2.96 -2.37 -1.92 0.14 1.06 1.86 -0.05 -1.12 0.51 0.35 -0.57 0.78
0.18 0.82 -0.7 -0.24 -0.88 -0.29 0.11 -0.09 0.92 1.17 0.44 0.06 -1.02 -1.58 -2.2 -0.58
-1.96 0.64 -1.01 -1.16 -8.69 -8.85 -4.28 -0.63 1.73 2.01 1.29 1.35 -5.32 -4.3 -4.93 -3.45
0.47 0.12 -0.4 -0.47 -0.26 -0.12 -0.06 -0.51 0.2 0.59 0.17 0.07 -0.07 -0.05 -0.15 -0.03
-0.18 0.57 -0.66 -0.25 -0.39 -0.22 0.43 -0.22 1.12 1.33 0.31 -0.19 -1.26 -1.89 -1.88 -0.83
0.08 0.29 -3.06 -2.21 -2.3 -1.84 -0.54 -1.29 0.47 0.97 0.08 -0.08 0.77 0.74 0.53 0.72
0.52 0.65 -2.98 -2.99 -1.63 -1.19 -0.08 -0.45 0.55 1.08 -0.53 -1.06 0.65 -0.02 -0.37 1.15
0.69 1.22 -2.24 -1.96 -1.62 -0.72 -0.28 -0.76 0.81 1.36 0.61 0.47 -0.85 -0.61 -0.94 -1.8
0.27 0.69 -0.67 -0.31 -2.3 -2.25 -0.14 -0.94 0.92 1.08 0.81 0.32 -0.38 -0.61 -1.93 0.25
-1.47 0.29 -0.54 -1.19 -0.5 -1.01 -0.39 0.13 0.83 1.47 0.18 0.8 -0.84 -0.68 -0.81 0.07
0.53 1.27 -4.95 -3.15 -3.05 -1.53 -0.34 -0.55 1.42 1.38 0.74 -0.02 -0.6 -2.43 -3.06 0.2
0.57 1.19 -2.6 -1.42 -1.77 0.26 -0.92 -0.68 1.13 0.94 0.04 -0.46 -0.47 -1.27 -0.45 0.41
0.25 0.59 -2.83 -2.83 -2.2 -1.26 -0.63 0.16 1.25 1.96 -0.03 -0.2 -1.09 -0.96 -0.72 -0.13
-0.47 1.15 -1.14 -1.95 -1.78 -2.08 0.51 -0.52 1.54 1.73 0.72 -0.52 -1.98 -1.54 -2.55 -1.43
0.1 0.77 -1.36 -1.56 -0.97 -1.54 0.36 0.56 0.9 1.46 -0.57 -0.27 -0.45 -1.18 -1.31 0.22
0.29 0.41 -1.95 -1.79 -1.68 -0.85 0.08 -0.37 0.6 0.53 0.02 -0.23 0.42 0.43 -0.21 0.87
0.51 0.5 -1.12 -0.83 -0.7 -0.05 -0.21 -0.24 0.92 1.25 0.24 0.34 -0.93 -0.99 -1.63 -0.38
-0.35 0.28 -1.96 -1.62 -1.51 -0.38 0.16 -0.31 0.78 1.02 0.48 0.13 0.48 -0.39 -0.57 0.4
0.27 0.53 -1.21 -0.67 -0.71 -0.6 0.18 -0.2 0.82 0.8 -0.24 -0.3 -0.1 0.18 -0.1 -0.23
0.12 0.37 -0.49 -0.25 -0.52 -0.38 0.05 -0.34 0.42 0.43 0.21 0.03 -0.13 -0.39 -0.53 0.63
0.35 0.88 -3.57 -3.05 -0.62 -0.97 0.02 -0.41 1.13 1.51 1.22 0.73 -2.35 -1.94 -2.89 -2.9
0.42 0.67 -1.99 -1.94 -1.26 -1.13 0.22 -0.02 0.89 0.99 0.14 0.28 -0.42 -0.07 -0.55 -0.01
0.78 0.66 -1.27 -0.92 -1.2 -0.95 -0.37 -0.66 0.77 1.46 0.09 0.05 -0.35 -0.77 -1.43 0.14
0.85 1.41 -1.1 -1.12 -0.73 -1.21 -0.78 -0.46 0.74 1.37 -0.44 -0.55 -0.66 -0.73 -0.83 -0.31
-0.91 0.49 -1.28 -0.98 -0.79 -0.58 0.09 -0.03 0.92 1.1 0.84 0.36 -0.37 -0.57 -0.98 -0.37
0.41 0.58 -0.84 -0.67 -0.43 -0.03 0.36 -0.65 0.75 1.18 0.25 0.35 -1.12 -0.93 -1.36 -0.85
0.03 0.33 -0.57 -0.78 -0.36 -0.83 0.41 -0.27 0.97 1.2 0.64 0.28 -0.79 -0.96 -1.89 -0.8
-0.38 0.71 -1.23 -1.34 -3.78 - -0.98 -0.81 0.83 1.71 0.76 0.37 0.1 -0.58 -1.02 0.43
0.25 0.43 -3.33 -2.72 -1.77 -1.15 0.52 -0.47 0.67 1.6 -0.11 -0.39 0.02 -0.34 -0.88 0.73
0.42 0.61 -1.09 -0.95 -1.05 -0.69 0.06 -0.1 1.03 0.74 0.61 0.12 -0.33 -0.62 -1.0 -0.34
0.15 0.66 -2.12 -1.72 -2.04 -1.23 -0.41 -0.41 0.99 1.56 0.58 0.12 -0.15 -0.68 -1.48 0.26

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.