1. Home
  2. Tools
  3. Expression Heatmap
  4. Results

Heatmap: Cluster_238 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

 Transpose table  Download table
Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
-0.51 -0.59 0.55 0.02 0.8 1.09 -1.51 -2.79 -3.21 -2.43 -0.87 -0.66 0.55 0.65 0.76 0.67
-7.33 - 0.76 2.22 1.64 2.33 0.41 -6.4 - - -3.99 -3.65 - - - -
- -3.4 1.17 1.9 1.77 1.83 0.9 -7.11 -3.31 - -1.48 -1.2 - - -2.57 -
-4.73 -3.08 0.67 1.44 0.76 2.87 0.32 -0.42 -4.52 -4.2 -1.98 -2.38 - - - -
-3.38 -6.57 0.4 0.74 1.72 2.14 -4.51 -5.06 -10.43 -7.04 -3.34 -2.64 -0.53 -0.24 1.18 0.12
-3.42 -2.46 0.78 0.83 1.31 2.61 -0.38 -1.2 -7.9 -8.84 0.14 0.41 -6.55 -8.65 - -7.68
- -2.37 0.05 1.31 2.39 2.04 -0.76 -4.48 - -1.2 -1.75 -0.53 -1.5 -1.01 - -
- - 0.95 1.87 2.25 2.5 - - - - - - - - - -
- - 1.33 0.74 1.81 2.73 -0.04 -7.27 - - -2.94 -1.24 - - -2.73 -
-1.46 - 1.02 1.35 1.1 2.2 -2.27 -4.63 -1.73 -0.76 -3.63 -2.74 -2.39 -1.02 1.17 -
-4.02 - 1.3 0.96 1.61 2.22 -0.76 -1.19 - -1.41 -0.79 -2.48 -1.19 -1.28 - -0.31
-2.04 -5.88 0.54 1.55 2.03 2.76 -4.36 -4.4 - -4.22 -4.18 -2.03 -6.31 - - -4.43
-2.27 - 0.45 1.23 0.58 2.48 0.41 -0.36 - - -2.33 0.15 - -0.61 -0.13 -
-2.65 -1.97 0.49 1.3 0.69 2.36 0.85 -0.98 -1.8 -2.87 0.07 -0.69 -2.34 -2.43 -3.47 -3.46
-3.51 - 0.06 1.17 1.78 2.64 - -5.39 - - -1.09 - 0.17 -0.34 - -0.95
- -5.41 1.21 2.08 1.84 1.82 -1.06 -2.48 -2.79 -4.15 -0.34 -0.52 - - - -
- -5.31 0.76 1.72 1.98 1.98 1.34 -3.46 -5.74 -5.68 -2.65 -2.43 - - -3.44 -
-8.65 -1.85 0.98 1.7 1.77 1.84 -0.42 -1.63 -1.23 -2.37 -0.61 -0.24 -3.36 -4.46 -3.39 -3.75
-4.43 -3.67 0.5 -0.4 1.78 2.39 0.3 0.34 - -5.8 -1.6 -1.12 -0.07 -2.45 - -0.74
-2.47 -2.96 -0.3 0.5 0.84 1.33 -4.09 -5.56 - - -2.07 -3.77 0.09 0.4 2.48 -0.3
-2.52 -1.99 0.22 0.39 1.04 2.05 -2.97 -3.24 - - -6.33 -3.04 0.76 0.72 -2.3 1.58
-5.19 -5.56 0.6 0.65 1.34 2.58 0.3 -2.75 - - -2.52 -2.41 0.16 -2.7 -1.37 -0.05
-1.06 -2.04 0.59 1.54 1.18 1.52 0.12 -1.47 -0.77 -0.89 0.43 -0.62 -1.42 -2.12 -2.53 -1.43
-1.95 -1.86 1.32 0.93 1.18 1.99 -2.19 -1.53 -4.36 -4.56 0.11 -0.28 -0.82 -0.64 -1.71 -0.45
-6.17 -5.34 0.86 1.22 2.26 2.5 -1.58 -4.56 -3.47 -5.73 -2.11 -1.99 -4.45 -5.55 -1.89 -4.58
-1.5 -2.93 0.89 0.6 1.82 2.64 0.26 -4.52 - - -1.94 -1.05 -3.28 - -2.31 -3.4
-3.2 -1.87 0.58 0.97 1.49 2.68 -1.27 -1.34 -5.52 -6.04 -2.87 -1.38 -0.95 -1.52 -1.58 -1.51
0.12 -2.63 0.24 0.73 0.65 1.53 -0.69 -0.46 -5.12 -4.06 -1.44 -0.49 -0.19 -0.29 0.52 0.86
-5.4 -5.75 1.1 2.18 1.47 1.89 -2.31 -3.52 -3.43 -3.33 0.34 -0.18 -4.01 -5.33 -4.26 -5.36
-2.18 -5.08 0.62 1.22 1.37 2.23 -0.02 -1.45 -4.2 -4.98 0.39 -0.16 -1.43 -2.3 -2.96 -1.99
-4.05 -3.18 0.62 1.21 1.92 1.62 0.52 -2.25 -1.18 -0.31 0.11 -0.05 -6.08 -6.52 -3.31 -4.46
-2.34 -0.94 0.48 0.83 0.61 1.89 -1.66 -2.17 -3.77 -4.29 -2.15 -1.25 -0.38 -0.08 1.46 0.16
-1.04 -3.36 -0.58 -0.03 0.21 1.11 -1.07 -0.26 -3.71 -3.88 -1.98 -1.7 1.25 0.89 1.06 1.09
-3.19 -4.62 0.2 0.12 1.58 2.41 -1.8 -2.05 -4.85 -4.47 -2.43 -1.65 -0.41 -0.27 0.76 -0.13
-4.14 - 1.63 1.31 2.13 2.38 - - - - - - - - -0.4 -
-1.75 -2.72 0.16 1.0 1.98 2.66 -3.06 -3.58 -1.7 -2.82 -0.8 -0.58 -3.68 -4.51 -5.03 -3.13
-6.74 -1.36 0.23 1.04 2.06 2.56 -0.59 -1.3 -1.22 -1.47 -3.07 -3.66 -3.71 - -2.74 -4.84
0.18 -0.6 -0.57 0.73 1.35 2.44 0.11 0.22 -4.51 - -2.02 -1.28 -2.92 -1.29 - -1.28
-1.71 -0.94 0.29 1.4 1.31 1.72 -0.25 -1.91 -2.42 -2.0 -1.2 -1.17 -0.33 -0.18 -1.2 -0.02
-6.88 - 0.82 1.57 1.99 2.73 -3.07 -5.2 - -5.75 -2.82 -2.25 -4.2 -6.27 -4.23 -
-5.87 - -1.15 -0.65 -0.93 -0.01 -3.36 -4.47 -6.3 -4.67 -2.75 -2.23 0.85 1.4 2.83 0.34
-4.82 -9.03 -0.09 1.33 1.69 2.94 0.4 -4.95 - - -4.13 -2.21 - - - -
- - 0.31 1.27 2.47 2.45 -0.96 -3.52 -2.75 -2.69 -2.17 -3.5 - - -2.74 -
-4.86 -3.86 0.68 1.32 1.76 2.06 0.19 -0.38 -2.61 -2.07 -1.31 -0.15 -2.6 -2.87 -2.8 -2.31
-3.13 -3.32 0.29 0.18 1.57 1.92 -2.42 -4.06 -5.16 -5.3 -2.51 -3.59 0.38 0.71 1.02 0.18
-2.51 - 1.14 2.25 1.63 2.39 - -4.34 - - - -1.09 - - - -
-2.44 -3.08 -0.88 -1.07 -0.39 0.49 -2.13 -1.44 -6.41 -6.87 -2.24 -1.18 1.35 1.35 1.83 1.37
-3.12 -4.73 -0.18 0.38 1.39 2.1 -0.36 -0.5 -3.76 -2.9 -2.21 -1.53 1.23 -0.32 -0.69 -0.42
-1.14 -0.2 0.18 0.06 1.01 1.01 -1.37 -0.01 -0.97 -0.9 -1.59 -1.56 0.53 0.71 -0.43 0.64
-1.97 -1.74 -0.7 -0.97 -0.04 0.65 -2.02 -3.0 -3.51 -4.73 -2.26 -2.36 1.07 1.9 1.85 0.54
-2.92 0.55 1.4 0.82 1.99 2.31 -6.86 -7.9 - - -4.45 -4.56 -2.29 -1.58 - -1.24
-3.62 - -0.12 0.97 0.74 2.36 -1.06 -1.35 - - - - 0.2 -0.9 - 1.88
-1.9 -1.31 -0.31 -0.38 0.44 0.88 -2.37 -2.12 -3.38 -3.43 -2.52 -1.8 1.31 0.93 1.19 1.5
-4.05 - 1.82 -2.33 2.25 2.51 -3.54 -4.53 - - -2.13 -2.25 0.23 - - -
- - 1.1 1.5 2.0 2.82 - - - - - - - - - -
-6.78 -9.53 0.48 2.08 1.97 2.14 -0.8 -5.5 -6.72 -5.79 -3.29 -2.86 -4.18 -4.06 -0.04 -3.89
-3.39 -3.46 -1.76 -1.08 0.51 0.12 -3.14 -1.95 - - - - 1.74 1.33 1.42 1.86
-1.32 - 0.12 0.24 1.23 1.97 -0.03 0.08 - - -5.96 -2.48 0.49 -1.29 1.01 0.02
-2.18 -4.93 0.16 0.55 0.5 1.33 -3.11 -2.35 -4.41 -4.57 -1.11 -0.4 0.92 0.72 1.38 0.57
-1.68 -5.72 0.74 1.13 1.54 2.42 -1.2 -1.33 -4.33 -4.09 -0.86 -0.85 -1.2 -1.98 -1.64 -1.03
-1.38 - 1.12 0.62 1.52 2.51 -0.14 0.34 -1.43 -1.38 -1.34 - - - - -
-7.38 -6.13 -1.15 -1.48 0.28 0.89 -3.13 -4.12 - - -6.93 -3.45 1.59 1.74 1.49 1.43
-2.82 -5.91 0.2 1.19 1.98 2.49 -0.87 -1.86 -5.03 -6.18 -0.94 -1.32 -2.02 -2.52 -1.33 -2.07

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.