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Heatmap: Cluster_264 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
2.85 1.85 -5.44 -5.11 - -2.9 -5.11 -2.77 -3.29 -4.82 -4.78 - 0.93 -0.1 0.03 -0.33
3.36 2.23 - - - -1.77 - - - - - - - - -0.44 -
1.8 0.62 -2.92 -3.81 -2.86 -3.79 -0.92 -0.84 -2.46 -2.18 -0.99 -0.91 1.08 1.39 1.09 0.22
3.45 2.22 -3.64 -6.31 -4.18 -2.87 - -5.12 -4.07 -6.01 -5.98 -6.08 - - - -
3.18 2.76 - -6.28 -6.22 -8.97 -7.6 - -6.36 - -8.26 -6.05 - - -3.72 -7.14
1.68 0.73 - -1.91 - -2.28 -1.6 -0.39 -2.08 - -3.57 -2.67 1.91 1.31 0.97 -0.13
1.74 1.08 -1.08 -0.48 -0.9 -0.81 0.1 -0.96 -1.57 -1.94 -0.6 -0.75 0.45 -0.24 -3.05 1.31
2.64 2.01 -0.74 -0.77 -0.33 -0.02 -2.28 -3.92 - - - - -2.21 -0.57 0.35 -1.59
2.15 1.51 -2.59 -2.95 -2.12 -3.44 -1.47 -0.42 -1.17 -1.57 -1.47 -0.84 0.77 0.31 -0.21 0.56
3.5 2.15 - - -2.56 - - -3.35 - - - - - - - -
1.34 0.16 -1.85 -2.61 -1.18 -0.98 -1.43 -1.64 -3.3 -2.5 -2.24 -1.94 1.23 1.49 0.96 1.27
3.43 2.11 - - - - - -0.1 - - - - - - - -
2.86 2.82 -3.96 -2.13 -0.11 -2.58 -2.82 -6.2 - - - - -4.63 - -3.66 -
2.5 1.52 -1.45 -0.65 -2.01 -0.52 0.4 -2.21 -2.95 - -5.17 -2.69 -0.75 -0.09 -0.01 0.22
3.4 2.18 -1.33 -0.99 - - - - - - - - - - - -
1.84 0.8 -0.3 -0.7 -0.64 -0.51 0.38 -0.79 -2.8 -2.26 -0.96 -0.19 -0.15 0.2 0.55 -0.38
3.29 2.27 - -3.32 - - - - -3.09 - - - - - 0.24 -
3.38 2.36 - - - - - - -3.58 - -2.49 -3.59 - -3.37 - -
2.71 2.05 -0.56 -0.9 -3.44 -1.42 -2.91 -1.25 -2.97 -2.33 -2.29 -1.98 0.16 -2.75 -1.68 -0.45
-0.85 -1.7 -6.49 - - - - - - - - - 1.93 1.9 1.57 2.2
3.1 1.37 -0.59 -0.67 - -1.04 - -0.57 - - - - - - 0.29 0.19
3.43 2.37 - - - - - - - - - - - - - -
1.45 1.16 -4.09 -4.35 - - -3.54 -1.58 -1.53 -0.96 - -5.12 1.2 0.57 0.22 2.23
3.4 2.33 -5.18 -4.84 -6.12 -4.43 -8.66 -9.08 -2.49 -4.11 - - - -7.27 -5.11 -5.23
-1.91 -2.67 - - - - - -5.97 - - - - 1.26 2.19 2.9 0.21
2.37 2.11 - - - - -1.43 -1.61 -0.17 - - - 1.15 -0.94 1.13 -
1.01 0.18 -1.48 -3.03 -1.17 -1.3 -2.08 -2.55 -3.52 -4.47 -4.43 -3.31 1.29 1.53 1.72 1.14
2.22 1.02 -4.05 - -3.97 -2.46 - -6.83 -1.85 -0.59 - - 2.07 0.19 -0.2 0.87
0.78 0.58 -2.16 -3.15 -1.97 -2.11 -1.46 -1.41 -1.77 -2.17 -2.74 -2.42 1.25 1.47 1.29 1.48
2.49 1.58 -0.71 -0.94 -0.36 -0.27 -0.2 -0.41 -1.52 -1.5 -1.02 -0.49 -2.0 -2.85 -0.7 -3.02
3.15 2.83 - - - - - - - - - - - - - -
0.97 0.67 -3.4 -4.89 -3.75 -2.73 -3.64 -2.61 - - -6.55 -5.07 1.5 1.5 0.88 2.11
1.16 0.79 -3.0 -3.76 -2.79 -1.84 -1.29 -1.26 -2.13 -2.37 -1.0 -1.01 1.44 1.11 0.6 1.48
3.55 2.1 - - - - - - - - - - - - - -
3.36 2.46 - -6.28 -6.5 - - -4.22 - - - -6.03 - -3.0 - -
1.87 1.14 -1.23 -4.22 0.22 -0.83 -0.64 -1.54 - -4.92 -4.88 -2.4 0.16 1.31 0.65 0.63
2.43 1.5 - - - - - - - - - - - - 2.96 -
0.8 0.57 -3.76 -3.62 - - -8.34 -0.87 -2.88 -1.86 -3.25 -3.89 1.14 1.53 1.52 1.82
3.43 2.36 - -4.07 - - -5.07 - - - - - - - - -
2.65 1.72 -2.84 -2.63 -2.87 -2.0 -0.79 -1.39 -3.09 -2.88 -2.32 -1.92 0.27 0.21 -0.78 0.17
-0.59 -1.48 -6.3 -7.8 -7.6 -6.89 -7.11 -7.49 -6.74 -8.27 -7.87 -5.65 2.32 2.25 1.37 1.35
3.0 2.98 - - - - - -7.09 - - - - - - -3.12 -
3.39 2.46 - - - - - - - - - - - - - -
3.09 2.33 -4.02 -6.49 -6.7 -5.86 - -7.5 - - - -6.25 -1.75 -0.23 -0.24 -1.46
3.03 2.23 -1.68 -1.94 -0.88 -1.35 -4.39 -8.42 -5.09 -3.45 -4.99 - -3.79 -1.14 -0.8 -1.65
1.57 1.24 -7.22 -5.3 -3.39 -4.67 -4.43 -2.51 -2.47 -1.12 -3.74 -2.48 1.31 1.35 0.92 1.3
1.24 0.23 -2.05 -3.37 -2.51 -2.72 -1.05 -1.31 -4.04 -3.83 -3.31 -2.41 1.37 1.61 1.52 0.99
1.9 1.84 - - -1.72 -2.58 -2.31 -6.63 -1.96 -3.31 -3.28 -3.38 0.17 1.33 1.58 -0.3
3.18 2.03 - -3.6 -1.81 -3.97 -1.81 -1.11 - - - - -0.03 -0.54 - -
3.51 2.2 - - - - - - - - - - - - - -
2.51 2.28 - - - - - -8.76 -0.42 0.63 -1.21 -3.39 -0.8 -0.59 -0.76 -0.32
1.95 1.08 -5.14 -3.81 -5.01 -2.17 - -3.89 -4.56 - - - 0.77 1.58 1.07 1.46
1.42 -0.04 -1.42 - - - - - - - - - - -2.22 3.56 -
1.88 1.17 -1.26 -2.45 -0.52 -0.84 -2.23 -0.85 -3.53 -3.25 -2.43 -1.88 0.27 1.06 0.89 0.72
2.97 2.42 - - - -3.15 -2.2 -2.3 -2.54 - - - -1.2 - -0.22 -0.32
1.43 0.37 -4.61 -5.2 -7.15 -5.16 -5.36 -5.65 -6.8 -6.77 -5.68 -4.8 1.77 1.39 1.82 1.15
2.91 2.62 - - - - - -0.47 -0.41 - - - - -0.17 - -
3.41 1.92 - - - - - 0.42 - -4.22 - - - -2.47 - -
0.78 0.13 -0.88 -1.18 -0.96 -0.75 -0.54 -1.16 -1.69 -2.04 -1.12 -1.0 1.29 1.06 0.78 1.14
1.02 0.86 -3.77 -5.18 -4.26 -3.38 -1.54 -1.5 -3.82 -3.66 -2.14 -1.6 1.11 1.4 1.18 1.78
1.06 0.42 -3.08 -2.73 -4.7 -5.41 -1.22 -1.06 -2.32 -1.63 -1.43 -1.62 1.2 1.48 0.87 1.68
3.07 2.26 -1.36 - -1.59 -1.24 - -4.86 - - - -3.96 -1.03 -0.71 - -1.16
3.04 1.92 - - - - -0.52 - -0.78 - - - 0.48 0.38 - -
3.15 2.13 -0.28 -0.73 -0.37 -1.05 - - -4.2 - - - - - - -
1.93 0.9 -0.27 -0.33 -0.46 -0.51 0.03 -0.92 -1.07 -1.72 -0.3 -0.36 -0.42 -0.31 0.03 -0.36
0.88 0.83 - - -3.21 - - -0.87 -1.7 - - - 1.83 1.39 0.55 1.92

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.