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Heatmap: Cluster_316 (Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023))

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
stage A1 (Dhaka et al., 2020)
stage A3 (Dhaka et al., 2020)
M-81E strain-control (Sun et al., 2020)
M-81E strain-salt (Sun et al., 2020)
Roma strain-control (Sun et al., 2020)
Roma strain-salt (Sun et al., 2020)
root (Murray et al., 2022)
shoot system (Murray et al., 2022)
119 days old-Postflowering drought stress (Varoquaux et al., 2019)
84 days old-control (Varoquaux et al., 2019)
84 days old-Preflowering drought stress (Varoquaux et al., 2019)
35 days old-control (Varoquaux et al., 2019)
Dev Stage 3 (Leiboff et al., 2019)
Dev Stage 2 (Leiboff et al., 2019)
Dev Stage 1 (Leiboff et al., 2019)
Dev Stage 4 (Leiboff et al., 2019)
0.13 0.64 0.18 0.21 0.13 0.3 0.22 -0.58 -0.17 -0.37 -0.62 -0.02 -0.51 -0.22 0.11 -0.04
0.32 0.69 0.25 0.22 0.38 0.39 -0.3 -1.06 -2.03 -1.82 0.9 1.05 -0.74 -0.76 -1.01 -0.48
-0.7 -0.64 -0.1 0.12 0.43 0.14 -0.24 -0.64 -2.03 -0.86 0.33 0.45 0.75 0.5 -0.17 0.45
0.03 0.26 -0.52 -0.16 0.68 0.51 0.53 -1.39 -0.52 -0.15 0.53 0.7 -0.77 -0.26 -0.57 -0.81
-0.27 0.71 0.18 0.34 0.49 0.69 0.38 -1.1 -1.37 -1.97 0.31 1.06 -0.6 -0.56 -1.3 -0.62
- 1.21 0.03 0.1 0.9 1.58 0.47 -2.89 - - 1.44 1.33 - - - -
-0.58 -0.39 -0.3 -0.78 0.06 -0.02 0.37 -0.73 -0.87 -0.66 -0.23 0.47 0.46 0.64 -0.3 1.06
-1.86 0.38 -0.04 - 0.09 0.93 1.99 - - - -0.37 1.11 - - 1.84 -
- -0.1 0.26 0.82 1.26 0.45 0.81 -1.82 -1.74 -1.68 -1.65 0.83 0.59 -0.51 - 0.47
-8.51 - 0.45 0.09 2.23 0.43 1.68 -4.55 - -7.89 -2.09 2.01 - - - -
- - 1.55 -1.41 1.18 0.81 1.53 -0.52 -8.99 -7.13 0.48 1.88 - - -7.68 -
0.22 0.46 0.09 0.22 0.39 0.72 0.06 -0.56 -0.11 -0.34 0.26 0.36 -0.61 -1.13 -0.53 -0.83
-3.53 0.31 0.91 1.25 0.49 0.86 -1.73 -0.23 0.49 -0.83 1.19 0.72 -4.57 -5.93 - -3.48
0.52 0.51 0.24 0.04 0.42 0.44 0.08 -0.84 -0.16 -0.5 0.18 0.72 -0.88 -0.96 -0.61 -0.88
-0.95 0.5 0.23 0.41 0.46 0.64 1.58 0.52 -2.11 -4.05 -0.21 1.24 -2.77 - - -0.89
-0.2 0.04 -0.15 -0.54 0.19 0.44 -0.25 -1.42 -1.42 -1.96 0.15 0.55 0.96 0.44 -0.26 0.54
- - 0.03 -1.19 1.92 1.25 2.21 -3.83 - - -2.67 1.78 - - -3.75 -
- - -1.53 - 0.85 1.72 2.36 -3.37 - - -0.55 1.83 -0.62 -2.71 - -1.74
0.14 0.08 -0.21 -0.93 -0.24 0.18 -0.5 -1.46 -2.19 -2.93 -0.76 -0.18 0.67 1.03 1.11 0.84
0.93 -7.01 -0.0 -2.26 -1.84 - -4.84 0.31 -1.41 -1.55 -0.59 1.68 0.95 0.87 -0.14 1.05
-2.33 -0.33 -0.76 -1.07 -1.41 -0.63 -0.24 -1.43 - - -3.65 -0.06 1.23 1.65 1.27 1.47
-1.68 -3.74 -1.03 -2.18 -0.68 -1.74 -1.5 -2.15 -2.44 -4.47 -1.08 -0.41 1.34 1.79 1.77 1.36
1.0 -0.68 -0.37 -0.56 -0.07 -1.19 -1.12 -0.58 -0.27 -1.14 -0.16 1.37 -0.12 -0.35 0.47 0.63
0.57 -1.05 0.25 0.09 0.32 0.12 0.22 -0.3 -0.51 -0.82 0.34 1.1 -0.67 -0.8 -0.52 -0.17
0.06 0.58 -0.12 -0.46 0.01 0.47 -0.84 -1.48 -1.1 -0.76 -0.51 0.37 0.31 0.78 0.56 0.04
0.17 0.22 0.2 -0.43 0.23 0.14 0.42 -0.79 -0.68 -0.91 0.35 0.87 -0.49 -0.1 -0.06 -0.37
0.41 0.21 0.01 -0.51 0.09 0.21 0.16 -0.73 -0.56 -0.85 0.16 0.49 0.19 -0.0 0.02 -0.07
-1.12 -0.05 -0.08 -0.28 0.6 -0.03 -0.46 -1.53 -1.47 -1.25 0.41 0.51 0.52 0.23 0.34 0.87
0.64 -0.3 0.05 0.6 0.47 -0.29 -3.65 -3.62 -3.36 -3.6 0.31 1.89 0.03 0.34 -1.23 -0.21
0.64 -0.81 0.23 0.2 0.74 0.21 -0.01 -1.15 -0.15 -0.6 0.94 1.23 -1.39 -1.37 -1.81 -1.31
0.84 0.55 -0.23 -0.16 0.15 0.1 0.21 -0.69 -0.86 -1.22 0.72 0.93 -0.73 -0.58 -1.02 -0.44
0.78 0.37 -0.23 -0.05 -0.13 0.09 0.34 -0.83 -0.12 -0.01 0.6 0.3 -0.61 -0.86 -1.34 0.14
0.19 0.43 0.29 0.54 0.24 0.46 0.44 -0.58 -0.37 -0.97 -0.07 0.28 -0.5 -0.46 -0.47 -0.64
-0.79 0.8 -0.36 0.35 -0.09 -0.27 -0.39 -1.29 -0.71 -1.78 -1.61 -0.41 0.52 0.48 1.11 0.78
0.68 -0.66 0.02 -0.19 -0.08 -1.27 0.07 -1.94 -3.12 -2.28 -0.33 1.73 -0.66 -0.33 0.66 0.81
-0.4 0.68 -0.31 0.4 -0.32 1.32 1.02 -0.58 -0.58 -3.18 0.82 1.08 -1.57 -2.56 -4.45 -1.73
0.56 0.28 0.57 0.09 0.51 0.24 0.15 -1.18 -0.32 -0.45 0.42 0.84 -1.4 -1.17 -0.7 -1.0
-0.58 0.58 0.16 -0.64 0.72 0.53 0.37 -0.17 -0.33 -0.74 0.3 0.81 -0.66 -0.83 -0.62 -0.77
-4.26 1.25 0.34 -0.4 1.65 0.93 1.02 0.57 -5.29 - -0.74 1.23 - - - -
-0.1 0.46 0.68 1.0 0.07 0.49 0.05 -0.78 -1.47 -1.25 1.21 0.92 -2.88 -2.47 -1.48 -1.51
0.46 0.89 -0.24 0.13 0.07 0.36 0.22 -1.0 -0.77 -1.01 -0.01 -0.25 0.12 -0.23 0.16 -0.19
-0.39 0.75 -0.07 0.56 0.83 0.8 -0.27 -0.72 -0.63 -0.54 0.15 0.59 -0.55 -0.89 -0.89 -1.08
0.15 0.09 -0.5 -0.79 -0.22 0.1 0.15 -1.14 -1.07 -1.1 -0.29 -0.25 0.76 0.6 0.59 0.79
-1.38 -1.94 -0.3 -0.52 -0.66 -3.59 -4.09 -4.2 - -7.48 -0.21 0.22 2.69 -0.75 1.03 0.92
1.02 0.34 1.11 0.29 1.5 0.28 -0.1 -3.48 -1.6 -3.04 0.94 0.87 - -6.68 - -4.38
0.07 0.77 -0.14 0.19 0.05 0.27 -0.2 -1.06 -0.63 -1.04 0.0 0.06 0.17 -0.25 -0.02 0.57
0.21 0.3 0.31 0.55 0.04 0.45 0.07 -0.28 -1.66 -2.82 0.82 0.61 -0.18 -0.59 -1.06 -0.21
-0.9 0.69 -0.83 -1.26 0.79 0.55 -0.34 -1.57 -1.21 -2.74 1.05 1.32 -0.2 -0.81 -0.55 0.36
0.15 0.59 0.34 0.65 0.1 0.3 0.19 -0.51 0.2 -0.55 0.07 0.23 -0.71 -1.03 -1.28 -0.25
0.57 -0.46 -0.89 -1.81 -1.57 -1.12 -0.45 -1.38 -1.15 -0.97 0.18 1.3 0.74 0.7 0.68 0.67
- - 1.13 -0.54 1.79 0.68 - -0.61 - - 1.37 1.77 - - - 0.51
-0.99 0.37 0.7 0.66 0.54 0.46 -0.16 -0.13 0.0 -0.09 0.75 0.8 -2.29 -2.64 -2.04 -1.39
-1.28 -7.71 1.45 -0.3 1.15 0.73 1.38 -2.66 -3.2 -4.04 0.27 1.98 -7.23 -5.15 -4.67 -6.35
0.19 0.48 0.09 0.18 0.56 0.58 -0.39 -0.74 -2.48 -2.87 -0.31 0.48 0.14 0.28 -0.01 0.15
-2.49 0.23 0.88 0.49 0.85 0.83 0.02 -1.89 -4.99 -4.94 1.29 0.75 0.29 -1.8 - -0.25
-0.14 -0.01 0.5 0.15 0.62 0.53 0.1 -0.67 -0.41 -0.67 0.23 0.73 -0.64 -0.55 -0.57 -0.56
0.83 0.53 0.13 0.3 0.36 -0.1 -0.03 -1.91 -2.56 -1.8 0.69 1.55 -1.11 -1.19 -0.92 -0.88
0.54 0.11 -0.59 -0.27 -0.07 0.01 -0.18 -1.34 -0.51 -0.31 0.31 0.56 0.08 0.27 -0.09 0.39
-3.09 1.82 -0.83 -0.1 1.93 0.92 -1.22 -3.98 -0.68 -0.93 0.61 0.35 -3.51 -2.76 -1.69 -2.78
0.21 0.19 -0.45 -0.83 -0.12 0.29 0.03 -0.68 -1.35 -1.12 -0.0 0.09 0.4 0.36 0.56 0.71
-0.59 0.08 -0.01 0.17 -0.04 0.35 0.64 -0.73 0.07 -0.58 0.38 0.49 -0.08 -0.21 -0.92 -0.01
-2.26 0.23 0.34 0.82 0.74 0.6 -0.09 -1.11 -0.62 -1.25 0.6 1.06 -0.81 -0.56 -0.62 -1.2
-2.52 1.15 0.59 0.67 1.05 1.1 0.48 -3.05 -4.9 -2.61 0.97 0.92 -2.06 -2.49 -3.17 -2.36
-0.21 0.99 0.07 0.65 0.33 0.79 0.37 -1.22 -1.12 -0.79 0.18 0.99 -1.27 -1.58 -1.81 -0.66

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.